BAC Information

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BAC

Clone NameB6Ng01-077O05
Chromosome1 (Build37)
Map Location 79,124,189 - 79,225,321
singlet/doubletdoublet
Overlap genenone
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077O05.bB6Ng01-077O05.g
ACCDH893745DH893746
length9581,122
definitionDH893745|Mus musculus domesticus DNA, BAC clone: B6Ng01-077O05, 5' end.DH893746|Mus musculus domesticus DNA, BAC clone: B6Ng01-077O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,224,365 - 79,225,321)(79,124,189 - 79,125,320)
sequence
gaattctgtggtggcagagactagctttcagatcttttccttgcatctag
cttcttttctttcagggccgtccaaatctttttcagacccatgtgccagc
actaattaattcttaacgttagctttctaactattttgactgttaaaaat
ctgcagcggtggaagccaaaattggaatgttaaaatatttaaaaaggtgt
tacatctgggtcaggggctgaattcaagcgggatgctgaaagacagttct
cttgatactgaatggctcagtggaagcatttgctgcagtccttggaatcc
tctgacttgattctacttcaaagcagagacaagacagaaccaggagcact
gagcagcctttgtgggtcttgcaaatccttatcacacttggaggatgatg
gggagatgatgcatctcttccaaacaaggccctgcttcattaggaataca
tcttgggctaacatggatttagtatctattttttgcacagagcaaaattg
taacgggatccaggaaggcccattaaataaccacagtgtggatcctcagt
gaccagtactgggtaataactactaagtgactttagaaggtgcttggtga
gttaactaggaattcgtctccaacctttgccttagtctcaggtgataata
tacagttcagagggagtttgagctgagaagaagcaactggaaaatgattt
attcaaagacagtttgatatacctttcactcacttagattcccatgtttt
gaaaattgtgttagggactaagggagatatttcaataatattaaaatgtt
gactgagatgaatcactgttctctgtgtgtcattaaaagccagtgggtgg
aaacatacaatgtgctattgccagaaataaaatagtacttagaagagaga
gcattgcatgttctacttttgtagaaaaacgtgggggaaggggaatggga
agggggtt
gaattctgagtgcttgtgagaaaactccaagaaaacaagataaggatctt
gtggcctcagtttctttaaaatagtttcttcttggaatgtgtttttggct
catcccaggcatattggatagaagtgagtttacttctactgttgccattc
atgtgcccctatgacaaaactccaatgtgactcctcttaactctcagagt
acaatttggccaatgctctgaataaagttggctattgcatgagactttag
tctgcctcatttttcaccaactagatgcttataaacactatctctctagc
aactttcagttaaccctttattcagcaagatgagagtatcttttgaaata
aatagtatctttggtttgatagattctctgaaagtaataagaaagagtgg
tgtgaaaagaaggttatctttgaaatcaagaccagtgctcgttcaaatta
catagttactagctgtgggttcttgtgatgtgtatcaaaatgccctgaat
ttgtgtctatatctagaaaaagaagcttaaaggagccaaatatgcacttc
aacatgtaaagcaagcatgtgccttgcactaatgagaaccagagttcaga
tacttatcacccatggaacagtttagtttagctcagcaagctctaggttg
aagtgagagatcctgcctcagtgtataatgtggagattaattgaggaaga
cctttgatatcaacctcagatctccatggacacatttcaaatacatgcac
atgcattcatactacataaacatatgtgtaaaaataaaaataaatgttta
aaaagattaaaatccttgagtaaagtaagattaggatgtatgaggggttc
ttgctgggaacagggtacatgggacttcatggtacataatgagacattag
aagtatgtagtgtgctacttggagtattttagaaacagaaaaccacatct
gctttatgtttctcttgtctgtgtctctctgtacttctaataattgtcta
ctcgttgctgcccatgttcattagtagctcttagtatgactaaagaaatg
attctaacactggcttctggagaatcattgtaaagaaaattgaagtggag
ccttaagatgaagaagccatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_79224365_79225321
seq2: B6Ng01-077O05.b_47_1004 (reverse)

seq1  AACACCCTT-CCACTCCCC-TCCCCCACGTTTTTCTACAAGAGGTAGAAC  48
      ||| ||||| ||| ||||| |||||||||||||||||||| | |||||||
seq2  AACCCCCTTCCCATTCCCCTTCCCCCACGTTTTTCTACAA-AAGTAGAAC  49

seq1  ATGCAATGCTCTCTCTTCTAAGTACTATTTTATTTCTGGCAATAGCACAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATGCTCTCTCTTCTAAGTACTATTTTATTTCTGGCAATAGCACAT  99

seq1  TGTATGTTTCCACCCACTGGCTTTTAATGACACACAGAGAACAGTGATTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTTCCACCCACTGGCTTTTAATGACACACAGAGAACAGTGATTC  149

seq1  ATCTCAGTCAACATTTTAATATTATTGAAATATCTCCCTTAGTCCCTAAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTCAACATTTTAATATTATTGAAATATCTCCCTTAGTCCCTAAC  199

seq1  ACAATTTTCAAAACATGGGAATCTAAGTGAGTGAAAGGTATATCAAACTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTCAAAACATGGGAATCTAAGTGAGTGAAAGGTATATCAAACTG  249

seq1  TCTTTGAATAAATCATTTTCCAGTTGCTTCTTCTCAGCTCAAACTCCCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAATAAATCATTTTCCAGTTGCTTCTTCTCAGCTCAAACTCCCTC  299

seq1  TGAACTGTATATTATCACCTGAGACTAAGGCAAAGGTTGGAGACGAATTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTATATTATCACCTGAGACTAAGGCAAAGGTTGGAGACGAATTC  349

seq1  CTAGTTAACTCACCAAGCACCTTCTAAAGTCACTTAGTAGTTATTACCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAACTCACCAAGCACCTTCTAAAGTCACTTAGTAGTTATTACCCA  399

seq1  GTACTGGTCACTGAGGATCCACACTGTGGTTATTTAATGGGCCTTCCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTCACTGAGGATCCACACTGTGGTTATTTAATGGGCCTTCCTGG  449

seq1  ATCCCGTTACAATTTTGCTCTGTGCAAAAAATAGATACTAAATCCATGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGTTACAATTTTGCTCTGTGCAAAAAATAGATACTAAATCCATGTT  499

seq1  AGCCCAAGATGTATTCCTAATGAAGCAGGGCCTTGTTTGGAAGAGATGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGATGTATTCCTAATGAAGCAGGGCCTTGTTTGGAAGAGATGCA  549

seq1  TCATCTCCCCATCATCCTCCAAGTGTGATAAGGATTTGCAAGACCCACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCCCATCATCCTCCAAGTGTGATAAGGATTTGCAAGACCCACAA  599

seq1  AGGCTGCTCAGTGCTCCTGGTTCTGTCTTGTCTCTGCTTTGAAGTAGAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTCAGTGCTCCTGGTTCTGTCTTGTCTCTGCTTTGAAGTAGAAT  649

seq1  CAAGTCAGAGGATTCCAAGGACTGCAGCAAATGCTTCCACTGAGCCATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGAGGATTCCAAGGACTGCAGCAAATGCTTCCACTGAGCCATTC  699

seq1  AGTATCAAGAGAACTGTCTTTCAGCATCCCGCTTGAATTCAGCCCCTGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAAGAGAACTGTCTTTCAGCATCCCGCTTGAATTCAGCCCCTGAC  749

seq1  CCAGATGTAACACCTTTTTAAATATTTTAACATTCCAATTTTGGCTTCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTAACACCTTTTTAAATATTTTAACATTCCAATTTTGGCTTCCA  799

seq1  CCGCTGCAGATTTTTAACAGTCAAAATAGTTAGAAAGCTAACGTTAAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGCAGATTTTTAACAGTCAAAATAGTTAGAAAGCTAACGTTAAGAA  849

seq1  TTAATTAGTGCTGGCACATGGGTCTGAAAAAGATTTGGACGGCCCTGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGTGCTGGCACATGGGTCTGAAAAAGATTTGGACGGCCCTGAAA  899

seq1  GAAAAGAAGCTAGATGCAAGGAAAAGATCTGAAAGCTAGTCTCTGCCACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGCTAGATGCAAGGAAAAGATCTGAAAGCTAGTCTCTGCCACC  949

seq1  ACAGAATTC  957
      |||||||||
seq2  ACAGAATTC  958

seq1: chr1_79124189_79125320
seq2: B6Ng01-077O05.g_68_1189

seq1  GAATTCTGAGTGCTTGTGAGAAAACTCCAAGAAAACAAGATAAGGATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTGCTTGTGAGAAAACTCCAAGAAAACAAGATAAGGATCTT  50

seq1  GTGGCCTCAGTTTCTTTAAAATAGTTTCTTCTTGGAATGTGTTTTTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTCAGTTTCTTTAAAATAGTTTCTTCTTGGAATGTGTTTTTGGCT  100

seq1  CATCCCAGGCATATTGGATAGAAGTGAGTTTACTTCTACTGTTGCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGGCATATTGGATAGAAGTGAGTTTACTTCTACTGTTGCCATTC  150

seq1  ATGTGCCCCTATGACAAAACTCCAATGTGACTCCTCTTAACTCTCAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCCTATGACAAAACTCCAATGTGACTCCTCTTAACTCTCAGAGT  200

seq1  ACAATTTGGCCAATGCTCTGAATAAAGTTGGCTATTGCATGAGACTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTGGCCAATGCTCTGAATAAAGTTGGCTATTGCATGAGACTTTAG  250

seq1  TCTGCCTCATTTTTCACCAACTAGATGCTTATAAACACTATCTCTCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCATTTTTCACCAACTAGATGCTTATAAACACTATCTCTCTAGC  300

seq1  AACTTTCAGTTAACCCTTTATTCAGCAAGATGAGAGTATCTTTTGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCAGTTAACCCTTTATTCAGCAAGATGAGAGTATCTTTTGAAATA  350

seq1  AATAGTATCTTTGGTTTGATAGATTCTCTGAAAGTAATAAGAAAGAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATCTTTGGTTTGATAGATTCTCTGAAAGTAATAAGAAAGAGTGG  400

seq1  TGTGAAAAGAAGGTTATCTTTGAAATCAAGACCAGTGCTCGTTCAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGAAGGTTATCTTTGAAATCAAGACCAGTGCTCGTTCAAATTA  450

seq1  CATAGTTACTAGCTGTGGGTTCTTGTGATGTGTATCAAAATGCCCTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTACTAGCTGTGGGTTCTTGTGATGTGTATCAAAATGCCCTGAAT  500

seq1  TTGTGTCTATATCTAGAAAAAGAAGCTTAAAGGAGCCAAATATGCACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTATATCTAGAAAAAGAAGCTTAAAGGAGCCAAATATGCACTTC  550

seq1  AACATGTAAAGCAAGCATGTGCCTTGCACTAATGAGAACCAGAGTTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTAAAGCAAGCATGTGCCTTGCACTAATGAGAACCAGAGTTCAGA  600

seq1  TACTTATCACCCATGGAACAGTTTAGTTTAGCTCAGCAAGCTCTAGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATCACCCATGGAACAGTTTAGTTTAGCTCAGCAAGCTCTAGGTTG  650

seq1  AAGTGAGAGATCCTGCCTCAGTGTATAATGTGGAGATTAATTGAGGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAGATCCTGCCTCAGTGTATAATGTGGAGATTAATTGAGGAAGA  700

seq1  CCTTTGATATCAACCTCAGATCTCCATGGACACA-TTCAAATACATGCAC  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTTTGATATCAACCTCAGATCTCCATGGACACATTTCAAATACATGCAC  750

seq1  ATGCATTCATACTACATAAACATATGTGTAAAAATAAAAATAAATGTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCATACTACATAAACATATGTGTAAAAATAAAAATAAATGTTTA  800

seq1  AAAAGATTAAAATCCTTGAGTAAGGTAAGATTAGGATGTATGAGGGGTTC  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAAGATTAAAATCCTTGAGTAAAGTAAGATTAGGATGTATGAGGGGTTC  850

seq1  TTGCTGGGAACAGGGTACATGGGACTTCATGGTACATAATGAGACATTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGAACAGGGTACATGGGACTTCATGGTACATAATGAGACATTAG  900

seq1  AAGTATGTAGTGTGCTACTTGGAGTATATTAGAAACAGAAAACCACATCT  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGTATGTAGTGTGCTACTTGGAGTATTTTAGAAACAGAAAACCACATCT  950

seq1  GCTTTATGTTTCTTCTTGTCTTGTTGTCTCTCTGTACTTCCTAATAAATT  999
      |||||||||||| ||||||||   ||||||||||||||| |||||||  |
seq2  GCTTTATGTTTC-TCTTGTCT--GTGTCTCTCTGTACTT-CTAATAA--T  994

seq1  TGTCTACTCGTTGCTGCCCATG-TCATTAGTAGCTCCTTAGGTAATGACT  1048
      |||||||||||||||||||||| |||||||||||| |||||   ||||| 
seq2  TGTCTACTCGTTGCTGCCCATGTTCATTAGTAGCT-CTTAG--TATGAC-  1040

seq1  TAGAGAAATGATTTCTACACTGAGCCTCGTGAG-ATCATTGTAGAGAAAA  1097
      || ||||||||||   |||||| || ||  ||| ||||||||| ||||||
seq2  TAAAGAAATGATTCTAACACTG-GCTTCTGGAGAATCATTGTAAAGAAAA  1089

seq1  TTGGAGGTGAGGCTTAAGATGAAAGAAAGCCATGA  1132
      ||| ||  ||| |||||||||||   |||||||||
seq2  TTGAAGTGGAGCCTTAAGATGAA--GAAGCCATGA  1122