BAC Information

Click to search

BAC

Clone NameB6Ng01-078G02
Chromosome1 (Build37)
Map Location 161,369,805 - 161,482,354
singlet/doubletdoublet
Overlap geneTnr
Upstream geneAstn1, Pappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484
Downstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078G02.bB6Ng01-078G02.g
ACCDH894094DH894095
length1,2461,127
definitionDH894094|Mus musculus domesticus DNA, BAC clone: B6Ng01-078G02, 5' end.DH894095|Mus musculus domesticus DNA, BAC clone: B6Ng01-078G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,481,103 - 161,482,354)(161,369,805 - 161,370,942)
sequence
gaattcctctctgatcaagtgacccagcgtgagctaagaaagagcgcccc
gctccaaagctgacgaaaataaaattgccggttaggccctcttctcatca
gtttttctttcacacttcccattagctcagtgaaaggaagatgaattaag
agttaaatgcaccaaaataacttaagcagtcattacaactcaaatgtgcc
gtttcccacaaactgtcttcctgcttcgcctatgcctttccctcacttag
ttcccgctcccttcttcatccctgcccctattctctctgttgctttctag
tctttttccttatccagggcactgtctctgtcctacactttcttctccaa
agatgccttctgcctccagagctgaccagcctccaaagcctctaccctct
cccggcatcctcagctctgtccccggccctcttctgcaaccttctatttc
ccagcatgcccacagtttccggagtgtctggccccagaagctaaatttct
agtgaaggaaaaacccatgtggcttgatgaaggcagaagatagaaacgag
gcaattgctttaacacacaattaaaataagctaaatgaagcagcaaaaca
agacagattcatgggttggagctcgaagggtgaaccctctgcagaagact
gacctccttccccctactccagctggcaccgtgccccagaagcatattga
ttaaccgatcaattctcagattccagagagatgggctaatgataaatggt
cacccaaccccccacccccatagccaccccccagtgactgccagacccag
tgaatgcgtactgaatcgtcccccattttgaaataccttcctcagatttt
atttttcgctcccctccccacttttgtttccagctacagggaactcctaa
gtagaaaatcaataggcgctttaattactggcccccaattcatcaggcct
caactgtattactctgcctgagccaaagcctcagacccaataaaccgaga
cagctaggcaccgggcaatgtgcagatgttgtgactctgctcagcttggt
tggggagccttcttgagaaccaccagcccatcttcagttacccgctttct
gatccctcttcttggtcagaagattaaaggaaaaagtcgcctccccccac
ctaatatagcatcttggccgtgtctgaatgccgagagcattcctagttcg
attctcctagccctctgggtatcgggagcctttgctctcatcacaa
gaattcattgactctacaaaaggcagagtggggtcttgggattatttaga
aaaaccatacaaggtgagtctagacaggcaaaagagagcattgcaaaata
taggtatgatggcgtcatggagagacagtctcaggtgaaatataggatta
catcaaaagcgaccagaattttttttattcactggactaatgtgggtgaa
gctctttgtgctggatcctggccctgctcggatgagccacttcaagtccc
tgctctggaggagttggcagctgattcaagtggggtctggtgaccatact
aacgatactaaccttattacaggatatcagaggatccagggaccctctga
gaaattttaagtaggagggggtgacttgatctgattctcattctacagag
atattctggaggtcagtgtagagctgagctgtaaggtgaggaagggctcc
tgcaaactcatttggatgctcttgtcatagtctagctgagaaatgatggg
gctccaggatcatctggagcagtaggcatagggggaacagagttttagaa
atacagagagagtggtacttggaggttggggttaaaacaattgtaaatcc
ttttatcctatggtctcagaaggttaaagaatctatgttaggtcctttta
agacttggcagagtcaagatgtgacttctctctttggcttcctcctgaga
gttccatctattacttagaaagcagctgccttgcctttcagatgaaggtc
ctgaagttatcacagaacttcgggtgagaaattttcttcaagacagttcc
atctaacatcctgcatgtgactggcccccatctttagtcttccaatcaag
aatgtttacatacctgaagttgaggaaatcaacctctcctgtggttgtac
accctagtcttggaagccttctttccaaatgatacttagacttgcctttg
atggatgtctcattgttagtttacttctgggaaacaccaaatgtaaaacc
aaacaaatacagggcagcttagaaagctctgatggacacgattctcatct
tgagcatatttgatagagaagaattaaaccttccattggactctccccct
ctctgaaggagaggaggaagaagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_161481103_161482354
seq2: B6Ng01-078G02.b_43_1288 (reverse)

seq1  TTGTGATG-----CAAGGCTCCCGA-ATCAAGA--GCTAGGGAGACGGAG  42
      ||||||||      ||||||||||| | | |||  ||||||   |  || 
seq2  TTGTGATGAGAGCAAAGGCTCCCGATACCCAGAGGGCTAGGAGAATCGAA  50

seq1  CTGAGGAATGGCTTTCTGCCCATCCAAGGACCCGCCCAGATTGCCTTAAT  92
      || |||||| ||| || |  ||| ||  ||| || |||   |||  ||  
seq2  CT-AGGAAT-GCTCTCGG--CATTCA--GACACGGCCAAGATGC--TATA  92

seq1  TTAGGGGTGGGGGAGGCGACTATTTCCTTT-ATCTTCTGACCACGGAAAG  141
      ||||| | ||||||||||||| |||||||| |||||||||||| | | ||
seq2  TTAGGTG-GGGGGAGGCGACTTTTTCCTTTAATCTTCTGACCAAGAAGAG  141

seq1  GAGATCAGGAAGCGGGTAACTGGAAGATGGGCTGGTGG-TCTC-AGAAGG  189
      | |||||| |||||||||||| |||||||||||||||| |||| ||||||
seq2  G-GATCAGAAAGCGGGTAACT-GAAGATGGGCTGGTGGTTCTCAAGAAGG  189

seq1  CTCCCC-ACCAAGCCTGAGCCAGAGTCACAACATCCTGCACATTGCCCGG  238
      |||||| |||||| ||||| |||||||||||||| |||||||||||||||
seq2  CTCCCCAACCAAG-CTGAG-CAGAGTCACAACAT-CTGCACATTGCCCGG  236

seq1  TGCCTAGCTGTCTCGGTTTATTGGGTCCTGAGGCTTTTGGCTCAGGCAGA  288
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  TGCCTAGCTGTCTCGGTTTATTGGGT-CTGAGGC-TTTGGCTCAGGCAGA  284

seq1  GTAATTACAGTTGAGGCCCTGATGAATTGGGGGCCAGTAATTAAAGCGCC  338
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTAA-TACAGTTGAGG-CCTGATGAATTGGGGGCCAGTAATTAAAGCGCC  332

seq1  TATTGATTTTCTACTTAGGAGTTCCCTGTAGCTGGAAACAAAAGTGGGGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTTTCTACTTAGGAGTTCCCTGTAGCTGGAAACAAAAGTGGGGA  382

seq1  GGGGAGCGAAAAATAAAATCTGAGGAAGGTATTTCAAAATGGGGGACGAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCGAAAAATAAAATCTGAGGAAGGTATTTCAAAATGGGGGACGAT  432

seq1  TCAGTACGCATTCACTGGGTCTGGCAGTCACTGGGGGGTGGCTATGGGGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACGCATTCACTGGGTCTGGCAGTCACTGGGGGGTGGCTATGGGGG  482

seq1  TGGGGGGTTGGGTGACCATTTATCATTAGCCCATCTCTCTGGAATCTGAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGTTGGGTGACCATTTATCATTAGCCCATCTCTCTGGAATCTGAG  532

seq1  AATTGATCGGTTAATCAATATGCTTCTGGGGCACGGTGCCAGCTGGAGTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATCGGTTAATCAATATGCTTCTGGGGCACGGTGCCAGCTGGAGTA  582

seq1  GGGGGAAGGAGGTCAGTCTTCTGCAGAGGGTTCACCCTTCGAGCTCCAAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGGAGGTCAGTCTTCTGCAGAGGGTTCACCCTTCGAGCTCCAAC  632

seq1  CCATGAATCTGTCTTGTTTTGCTGCTTCATTTAGCTTATTTTAATTGTGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAATCTGTCTTGTTTTGCTGCTTCATTTAGCTTATTTTAATTGTGT  682

seq1  GTTAAAGCAATTGCCTCGTTTCTATCTTCTGCCTTCATCAAGCCACATGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGCAATTGCCTCGTTTCTATCTTCTGCCTTCATCAAGCCACATGG  732

seq1  GTTTTTCCTTCACTAGAAATTTAGCTTCTGGGGCCAGACACTCCGGAAAC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCTTCACTAGAAATTTAGCTTCTGGGGCCAGACACTCCGGAAAC  782

seq1  TGTGGGCATGCTGGGAAATAGAAGGTTGCAGAAGAGGGCCGGGGACAGAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCATGCTGGGAAATAGAAGGTTGCAGAAGAGGGCCGGGGACAGAG  832

seq1  CTGAGGATGCCGGGAGAGGGTAGAGGCTTTGGAGGCTGGTCAGCTCTGGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATGCCGGGAGAGGGTAGAGGCTTTGGAGGCTGGTCAGCTCTGGA  882

seq1  GGCAGAAGGCATCTTTGGAGAAGAAAGTGTAGGACAGAGACAGTGCCCTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGGCATCTTTGGAGAAGAAAGTGTAGGACAGAGACAGTGCCCTG  932

seq1  GATAAGGAAAAAGACTAGAAAGCAACAGAGAGAATAGGGGCAGGGATGAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGAAAAAGACTAGAAAGCAACAGAGAGAATAGGGGCAGGGATGAA  982

seq1  GAAGGGAGCGGGAACTAAGTGAGGGAAAGGCATAGGCGAAGCAGGAAGAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGCGGGAACTAAGTGAGGGAAAGGCATAGGCGAAGCAGGAAGAC  1032

seq1  AGTTTGTGGGAAACGGCACATTTGAGTTGTAATGACTGCTTAAGTTATTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGGGAAACGGCACATTTGAGTTGTAATGACTGCTTAAGTTATTT  1082

seq1  TGGTGCATTTAACTCTTAATTCATCTTCCTTTCACTGAGCTAATGGGAAG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATTTAACTCTTAATTCATCTTCCTTTCACTGAGCTAATGGGAAG  1132

seq1  TGTGAAAGAAAAACTGATGAGAAGAGGGCCTAACCGGCAATTTTATTTTC  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGAAAAACTGATGAGAAGAGGGCCTAACCGGCAATTTTATTTTC  1182

seq1  GTCAGCTTTGGAGCGGGGCGCTCTTTCTTAGCTCACGCTGGGTCACTTGA  1238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTTGGAGCGGGGCGCTCTTTCTTAGCTCACGCTGGGTCACTTGA  1232

seq1  TCAGAGAGGAATTC  1252
      ||||||||||||||
seq2  TCAGAGAGGAATTC  1246

seq1: chr1_161369805_161370942
seq2: B6Ng01-078G02.g_69_1195

seq1  GAATTCATTGACTCTACAAAAGGCAGAGTGGGGTCTTGGGATTATTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGACTCTACAAAAGGCAGAGTGGGGTCTTGGGATTATTTAGA  50

seq1  AAAACCATACAAGGTGAGTCTAGACAGGCAAAAGAGAGCATTGCAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATACAAGGTGAGTCTAGACAGGCAAAAGAGAGCATTGCAAAATA  100

seq1  TAGGTATGATGGCGTCATGGAGAGACAGTCTCAGGTGAAATATAGGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATGATGGCGTCATGGAGAGACAGTCTCAGGTGAAATATAGGATTA  150

seq1  CATCAAAAGCGACCAGAATTTTTTTTATTCACTGGACTAATGTGGGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAGCGACCAGAATTTTTTTTATTCACTGGACTAATGTGGGTGAA  200

seq1  GCTCTTTGTGCTGGATCCTGGCCCTGCTCGGATGAGCCACTTCAAGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGTGCTGGATCCTGGCCCTGCTCGGATGAGCCACTTCAAGTCCC  250

seq1  TGCTCTGGAGGAGTTGGCAGCTGATTCAAGTGGGGTCTGGTGACCATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGAGGAGTTGGCAGCTGATTCAAGTGGGGTCTGGTGACCATACT  300

seq1  AACGATACTAACCTTATTACAGGATATCAGAGGATCCAGGGACCCTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATACTAACCTTATTACAGGATATCAGAGGATCCAGGGACCCTCTGA  350

seq1  GAAATTTTAAGTAGGAGGGGGTGACTTGATCTGATTCTCATTCTACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTAAGTAGGAGGGGGTGACTTGATCTGATTCTCATTCTACAGAG  400

seq1  ATATTCTGGAGGTCAGTGTAGAGCTGAGCTGTAAGGTGAGGAAGGGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGGAGGTCAGTGTAGAGCTGAGCTGTAAGGTGAGGAAGGGCTCC  450

seq1  TGCAAACTCATTTGGATGCTCTTGTCATAGTCTAGCTGAGAAATGATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACTCATTTGGATGCTCTTGTCATAGTCTAGCTGAGAAATGATGGG  500

seq1  GCTCCAGGATCATCTGGAGCAGTAGGCATAGGGGGAACAGAGTTTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGATCATCTGGAGCAGTAGGCATAGGGGGAACAGAGTTTTAGAA  550

seq1  ATACAGAGAGAGTGGTACTTGGAGGTTGGGGTTAAAACAATTGTAAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGAGAGTGGTACTTGGAGGTTGGGGTTAAAACAATTGTAAATCC  600

seq1  TTTTATCCTATGGTCTCAGAAGGTTAAAGAATCTATGTTAGGTCCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCTATGGTCTCAGAAGGTTAAAGAATCTATGTTAGGTCCTTTTA  650

seq1  AGACTTGGCAGAGTCAAGATGTGACTTCTCTCTTTGGCTTCCTCCTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGCAGAGTCAAGATGTGACTTCTCTCTTTGGCTTCCTCCTGAGA  700

seq1  GTTCCATCTATTACTTAGAAAGCAGCTGCCTTGCCTTTCAGATGAAGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCTATTACTTAGAAAGCAGCTGCCTTGCCTTTCAGATGAAGGTC  750

seq1  CTGAAGTTATCACAGAACTTCGGGTGAGAAATTTTCTTCAAGACAGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTATCACAGAACTTCGGGTGAGAAATTTTCTTCAAGACAGTTCC  800

seq1  ATCTAACATCCTGCATGTGACTGGCCCCCATCTTTAGTCTTCCAATCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACATCCTGCATGTGACTGGCCCCCATCTTTAGTCTTCCAATCAAG  850

seq1  AATGTTTACATACCTGAAGTTGAGGAAATCAACCTCTCCTGTGGTTGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTACATACCTGAAGTTGAGGAAATCAACCTCTCCTGTGGTTGTAC  900

seq1  ACCCTAGTCTTGGAAGCCTTCTTTCCAAAATGATACTTAGACTTGCCTTT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCCTAGTCTTGGAAGCCTTCTTTCC-AAATGATACTTAGACTTGCCTTT  949

seq1  GATGGATTGTCTCCATTGTTAGTTTTACTCTGGGAAACACCAAATGTAAA  1000
      |||||| ||||| ||||||||||||   ||||||||||||||||||| ||
seq2  GATGGA-TGTCT-CATTGTTAGTTTACTTCTGGGAAACACCAAATGT-AA  996

seq1  AACCAAACAAAATACAGGGCAGCTTAGAAAGCTCTGATGGACAACGAATT  1050
      |||||||| ||||||||||||||||||||||||||||||||| ||| |||
seq2  AACCAAAC-AAATACAGGGCAGCTTAGAAAGCTCTGATGGAC-ACG-ATT  1043

seq1  CTCATCCTAGAAGCAATATTTGAT-TAGAAGAAGGATATAAAACACTCCC  1099
      |||||| |   ||| |||||||||  ||||||     || |||| || ||
seq2  CTCATCTT--GAGC-ATATTTGATAGAGAAGA-----ATTAAAC-CTTCC  1084

seq1  ATGGGACTCTCCCCTTCTCTG-AGGAGA-AAGG--GAAGGGGA  1138
      || ||||||||||| |||||| ||||||  |||  ||||||||
seq2  ATTGGACTCTCCCCCTCTCTGAAGGAGAGGAGGAAGAAGGGGA  1127