BAC Information

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BAC

Clone NameB6Ng01-078H14
Chromosome1 (Build37)1 (Build37)
Map Location 50,832,165 - 50,832,70545,204,726 - 45,205,648
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078H14.bB6Ng01-078H14.g
ACCDH894162DH894163
length550937
definitionDH894162|Mus musculus domesticus DNA, BAC clone: B6Ng01-078H14, 5' end.DH894163|Mus musculus domesticus DNA, BAC clone: B6Ng01-078H14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,832,165 - 50,832,705)(45,204,726 - 45,205,648)
sequence
tttgtttagctctgagccccactttttaatggggttatttgattttctgg
agtctaccttcttgagttctttatatatattggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggttgcctttttgt
cttattgaaggtgcgttttgccttgcagaagctttgcaattttatgaggt
cccatttgtcgattcttgatcttatagcacaagccattgctgttctattc
aggaattttttccctgtacccatatcttcgaggcttttccctactttctc
ctctataagtttcagtgtctctggttttatgtggagttccttaatccact
tagatttgaccttaatacaagcagataggaatggatcaattcacattctt
ctacatgatgaccaccaagtgtgccagcaccatttgttgaaaatgctgcc
ttttttccactggacggtttttgctcccttggcagaaatcaagtgaccat
aggtgtgtgggttcatttctggggcttcaattctattccattggtctact

gaattcatttagaatttggcattgtggagataaaaaataatatgttatat
ataaaatgaaaatctcagactcaaaacttacattcaagaatttcagaagt
gcagtggttttagaattttttcatttgatccctttatttcagagctgagg
aaacgaacacccagacaaataaaataatttgcctagtatcaaataaatta
ttgaaatctctgtctcctgagtttttcttttatagttttattgatgaccc
tgatagaaaatattataggattgatgtaaaagaataacttttaaaaagca
tataaacaacaaattgaagaaacttagtcgaaaagaattagattaacagg
gagatgaagaaaagcatgctaaagaaagggaggaggaaggaattgcagaa
tatggaggatattgagagacagtttagttaaacaaaactgagtgcttata
ttaaaaagtatgtggaaactcactacgttgtaacctaattaaaaaatatt
ttgtttaaaaaaataaatgagtgaaaaacgcatctcctagaagacatgaa
tttgctaaataaaagtttaattgtaagtatggagtacctctttttgagtt
gttggtcagggaggctctggatgctttcattacaacatagagtatggcca
cttttttggttactgtatttagatcttttctgttgttttgatagatactc
agacaagaaacttaaaggagaaagggattggattggtttacaatttgaga
agagattcagtttatccattgtataaatatgtggcaattctataggcagt
cagagagagagacagagagagagagagagagagagacagagacgagacag
agacagagacagagagagacagagagacagagagagacagagagactgag
atgagagagacagagagagactggacagagagacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50832165_50832705
seq2: B6Ng01-078H14.b_58_599 (reverse)

seq1  AGTAGACCAATGGAATAAAATTGAAGACCCAGAAATGAACCCACACATCT  50
      ||||||||||||||||| |||||||| |||||||||||||||||||| ||
seq2  AGTAGACCAATGGAATAGAATTGAAGCCCCAGAAATGAACCCACACACCT  50

seq1  ATGGTCACTTAATTTTTGACAGGGGAGCTAAAGCCATTCAGTGGAAAAAA  100
      |||||||||| |||| || || |||||| ||| || | ||||||||||||
seq2  ATGGTCACTTGATTTCTGCCAAGGGAGCAAAAACCGTCCAGTGGAAAAAA  100

seq1  GACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCATGCAG  150
      | |||||||||||||||||||||||||||||  ||| ||| |||||| ||
seq2  GGCAGCATTTTCAACAAATGGTGCTGGCACACTTGGTGGTCATCATGTAG  150

seq1  AAGAATGTGAAATGATTCATTCCTATCTCCTTGTAGTAATGCCAAATCTA  200
      ||||||||||| |||| ||||||||||| |||||| ||| | ||||||||
seq2  AAGAATGTGAATTGATCCATTCCTATCTGCTTGTATTAAGGTCAAATCTA  200

seq1  AGTGGATTAAGGAACTCCACTTAAAACCAGAGACACTGAAACTTATAGAG  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAG  250

seq1  GAGAAGGTGGGGAAAAGCCTCCAAGATATGGGCACAGGGGAAAAATTCCT  300
      ||||| || |||||||||||| |||||||||| |||||| ||||||||||
seq2  GAGAAAGTAGGGAAAAGCCTCGAAGATATGGGTACAGGGAAAAAATTCCT  300

seq1  GAATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATGGACAAATGGG  350
      ||||||||||||||||||||||||| ||||||  ||||| ||||||||||
seq2  GAATAGAACAGCAATGGCTTGTGCTATAAGATCAAGAATCGACAAATGGG  350

seq1  AACTCATAAAGTTGCAAACCTTCTGTAAGGCAAAAGACACCTTCAATAAG  400
      | |||||||| ||||||| |||||| |||||||||  |||||||||||||
seq2  ACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAACGCACCTTCAATAAG  400

seq1  ACAAAAAGGCCACCAACAGATTGGGAGAGGATCTTTACCTATCCTAAATC  450
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  ACAAAAAGGCAACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATC  450

seq1  AAATAGGGGACTAAGATCCAATATATATAAAGAACTTAAGAAGGTGGATT  500
      | |||||||||||| ||||||||||||||||||||| |||||||| || |
seq2  AGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTAGACT  500

seq1  CCAGAAAATCAAATAACCCCATTAAAAA-TGGGGCTCAGAGC  541
      |||||||||||||||||||||||||||| |||||||||||||
seq2  CCAGAAAATCAAATAACCCCATTAAAAAGTGGGGCTCAGAGC  542

seq1: chr1_45204726_45205648
seq2: B6Ng01-078H14.g_71_990 (reverse)

seq1  TCTCTCTCTGTCTCTCTCTGTCTCTGTCTCTCTGTCTCTCTCTGTCTCTC  50
      ||||||||||||||||||  |||| |||||||||||||||||||||||||
seq2  TCTCTCTCTGTCTCTCTC-ATCTCAGTCTCTCTGTCTCTCTCTGTCTCTC  49

seq1  TGTCTCTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTC  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTCTCTCTCTGTCTCTGTCTCTGTCTC-GTCTCTGTCTCTCTCTCTCTC  98

seq1  TCTCTCTCTGTCTCTCTCTCCTGACTGCCTATAGAATTGCCACATATTTA  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGTCTCTCTCT-CTGACTGCCTATAGAATTGCCACATATTTA  147

seq1  TACAATGGATAAACTGAATCTCTTCTCAAATTGTAAACCAATCCAATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGGATAAACTGAATCTCTTCTCAAATTGTAAACCAATCCAATCCC  197

seq1  TTTCTCCTTTAAGTTTCTTGTCTGAGTATCTATCAAAACAACAGAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTTAAGTTTCTTGTCTGAGTATCTATCAAAACAACAGAAAAGA  247

seq1  TCTAAATACAGTAACCAAAAAAGTGGCCATACTCTATGTTGTAATGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATACAGTAACCAAAAAAGTGGCCATACTCTATGTTGTAATGAAAG  297

seq1  CATCCAGAGCCTCCCTGACCAACAACTCAAAAAGAGGTACTCCATACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGAGCCTCCCTGACCAACAACTCAAAAAGAGGTACTCCATACTTA  347

seq1  CAATTAAACTTTTATTTAGCAAATTCATGTCTTCTAGGAGATGCGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAACTTTTATTTAGCAAATTCATGTCTTCTAGGAGATGCGTTTTT  397

seq1  CACTCATTTATTTTTTTAAACAAAATATTTTTTAATTAGGTTACAACGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTTATTTTTTTAAACAAAATATTTTTTAATTAGGTTACAACGTA  447

seq1  GTGAGTTTCCACATACTTTTTAATATAAGCACTCAGTTTTGTTTAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTCCACATACTTTTTAATATAAGCACTCAGTTTTGTTTAACTAA  497

seq1  ACTGTCTCTCAATATCCTCCATATTCTGCAATTCCTTCCTCCTCCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTCAATATCCTCCATATTCTGCAATTCCTTCCTCCTCCCTTTC  547

seq1  TTTAGCATGCTTTTCTTCATCTCCCTGTTAATCTAATTCTTTTCGACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATGCTTTTCTTCATCTCCCTGTTAATCTAATTCTTTTCGACTAA  597

seq1  GTTTCTTCAATTTGTTGTTTATATGCTTTTTAAAAGTTATTCTTTTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCAATTTGTTGTTTATATGCTTTTTAAAAGTTATTCTTTTACAT  647

seq1  CAATCCTATAATATTTTCTATCAGGGTCATCAATAAAACTATAAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTATAATATTTTCTATCAGGGTCATCAATAAAACTATAAAAGAAA  697

seq1  AACTCAGGAGACAGAGATTTCAATAATTTATTTGATACTAGGCAAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGAGACAGAGATTTCAATAATTTATTTGATACTAGGCAAATTAT  747

seq1  TTTATTTGTCTGGGTGTTCGTTTCCTCAGCTCTGAAATAAAGGGATCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTCTGGGTGTTCGTTTCCTCAGCTCTGAAATAAAGGGATCAAA  797

seq1  TGAAAAAATTCTAAAACCACTGCACTTCTGAAATTCTTGAATGTAAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAATTCTAAAACCACTGCACTTCTGAAATTCTTGAATGTAAGTTT  847

seq1  TGAGTCTGAGATTTTCATTTTATATATAACATATTATTTTTTATCTCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGAGATTTTCATTTTATATATAACATATTATTTTTTATCTCCAC  897

seq1  AATGCCAAATTCTAAATGAATTC  923
      |||||||||||||||||||||||
seq2  AATGCCAAATTCTAAATGAATTC  920