BAC Information

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BAC

Clone NameB6Ng01-079A02
Chromosome1 (Build37)
Map Location 12,456,489 - 12,626,689
singlet/doubletdoublet
Overlap geneLOC100039709
Upstream geneA830018L16Rik, LOC665262
Downstream geneLOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079A02.bB6Ng01-079A02.g
ACCDH894547DH894548
length1,1211,061
definitionDH894547|Mus musculus domesticus DNA, BAC clone: B6Ng01-079A02, 5' end.DH894548|Mus musculus domesticus DNA, BAC clone: B6Ng01-079A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,625,547 - 12,626,689)(12,456,489 - 12,457,558)
sequence
gaattcactggatacatttattaggaataattctacccaaatgcaattaa
atcctatttttgtaatgttggcatgaccttgcattgtaattgcaaataca
tttctgaagcctagagtggtttccagctgggaacgctgctgctctgtttc
tgtgttgacagtcattaattatttctatagataaatgagtaaatcagcaa
gttagccctatttgcatttcgataaacatgaaagcaaatgaagaactgag
agctactaatttgattttgcaaatgtaaaattcacaaagcatcaacaaaa
agttaaaaaacaaaaaaaagaaaaagggaaaaaagagaaatttccagttt
gcctagagcatcttgcagtagtaactgtccaataaataactgaaattgag
gctgattttcttccatttggaaagaaatgccgtgcttaaggtagcctaca
agtgggaccatattatgttcagctcaaaagtggcaaaggtttgctggtcg
gcaatcatggagaagactctagctcttggtcttgacaccctcatgggccc
acgagtacctctgttaggtctttggaccaaggatagtttcctggaagtca
tgagtctggttttctgctgggagcaaggtcaaaaatggtccccctttttc
ttcacgctcagaaagaggaataggaatctcttgttagcctattgcactta
attgatattccatctttacccagaatagtttccatggtcattccacacac
actgagtaccttagattcttagggattgcctagggctttgatattgggtt
gacctggctttatttagttggtagggaaatgggagaaaaatacatggcag
tgagagtggctagacagcaacggggactggtaaccagtagtattatgagg
ttgcaggggaaaggtagcaagtcaacaaatgacaattgttctttcactgt
tcacgaaatcctgagagttttatgttcagcaataatattttccttttgct
actttaccagactactcttgagatcatattgatcacattttgatgcaaag
atcttatgttgtttctgaaaacatcattgttcatcatagttgtctgtttt
ggacttactagttgagactta
gaattcctaggttgtgctgggtacaggagctcaccacactcccctataag
caatctcagaaatgcagacttatcatggaactcctctgcttggaatcctt
cagtggcattccatcaaggttgtgccagaagtgtttctggagcgcactga
ccctccagcatcctgcctgttgcttttctaccatcgctctgacatcctgc
ctctgattttctacatcactgttcccagctcattggttccctgtagggtg
cagagccaccctgatcactgtgctcactcctggtgatgccctgcttattc
agtctgggagttggtgcatgctctccctccactttgtcataatctttaac
cttagcccactttccattctgtcattcatcttcccctccaaaaagctttc
tcccctattccagaaactttcctgagtcctcccaactctcttacaatgat
gaaccagtctgcactgttatttcagtagctatctgagactcagctatctg
agtatttaccaaagtactctcatgctacattccctgacatctagcattgt
gcctgagaaagagaaaactatttaatgtagtttgagtttatttattaatt
taatagcacaccactgttcctcaaacattgatacatgaaattgtcctggc
atgagcttttcttttcttttttttttttcaacaaaacacctatttgttta
atgagtattcgctgataataaaaaattaaactatcttatgaataaaaaga
atttttaaaaagcatgatgtgtttctttgactttctatgtgattcttgtt
ttatttcttttttattttttaattaggtattttcttcattacatttcaaa
tgctatcccaaaagttgccccatacccgcactcccttcccccacccccta
ctcccacttcttgggccctggcattccctggtctgaggcatataagtttg
cagacctatggacctcttcttttcaatgatgggcgactaggccatctttc
tgatcatatgcaggtagaacacagctctgtgggggtactgggtaagttca
tatgttgttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_12625547_12626689
seq2: B6Ng01-079A02.b_29_1149 (reverse)

seq1  TAAGTTCTCAATACTTAGTAAATGTCAAAACAGGACAAATTAATGAATGA  50
      |||| ||||||    |||||| |  ||||||| ||||| |  ||| ||||
seq2  TAAG-TCTCAA---CTAGTAAGT-CCAAAACA-GACAACT--ATG-ATGA  41

seq1  ACAATTGGATTGTTTTCAGAAACCACATAAGATCTTTTTGCATCAAAAAT  100
      |||||  || ||||||||||||| ||||||||||  ||||||||||||  
seq2  ACAAT--GA-TGTTTTCAGAAACAACATAAGATC--TTTGCATCAAAA--  84

seq1  GGTGATCAATATTGATTCTTCAAGAGTAGTCTGGTAAAAGTAGCAAAAGG  150
       |||||||||| ||||   |||||||||||||||| ||||||||||||||
seq2  TGTGATCAATA-TGAT--CTCAAGAGTAGTCTGGT-AAAGTAGCAAAAGG  130

seq1  AAAATATTATTTGCTGAACAATAAAACTCTCAGGATTTCGTGAACAGTGA  200
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  AAAATATTA-TTGCTGAAC-ATAAAACTCTCAGGATTTCGTGAACAGTGA  178

seq1  AGGAACAATTGTCATTTGTTGACTTGCTACCTTTCCCCTGCAACCTCATA  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAATTGTCATTTGTTGACTTGCTACCTTTCCCCTGCAACCTCATA  228

seq1  ATACTACTGGTTACCAGTCCCCGTTGCTGTCTAGCCACTCTCACTGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACTGGTTACCAGTCCCCGTTGCTGTCTAGCCACTCTCACTGCCAT  278

seq1  GTATTTTTCTCCCATTTCCCTACCAACTAAATAAAGCCAGGTCAACCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTCTCCCATTTCCCTACCAACTAAATAAAGCCAGGTCAACCCAA  328

seq1  TATCAAAGCCCTAGGCAATCCCTAAGAATCTAAGGTACTCAGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGCCCTAGGCAATCCCTAAGAATCTAAGGTACTCAGTGTGTGTG  378

seq1  GAATGACCATGGAAACTATTCTGGGTAAAGATGGAATATCAATTAAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACCATGGAAACTATTCTGGGTAAAGATGGAATATCAATTAAGTGC  428

seq1  AATAGGCTAACAAGAGATTCCTATTCCTCTTTCTGAGCGTGAAGAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCTAACAAGAGATTCCTATTCCTCTTTCTGAGCGTGAAGAAAAAG  478

seq1  GGGGACCATTTTTGACCTTGCTCCCAGCAGAAAACCAGACTCATGACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCATTTTTGACCTTGCTCCCAGCAGAAAACCAGACTCATGACTTC  528

seq1  CAGGAAACTATCCTTGGTCCAAAGACCTAACAGAGGTACTCGTGGGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACTATCCTTGGTCCAAAGACCTAACAGAGGTACTCGTGGGCCCA  578

seq1  TGAGGGTGTCAAGACCAAGAGCTAGAGTCTTCTCCATGATTGCCGACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGTCAAGACCAAGAGCTAGAGTCTTCTCCATGATTGCCGACCAG  628

seq1  CAAACCTTTGCCACTTTTGAGCTGAACATAATATGGTCCCACTTGTAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTTGCCACTTTTGAGCTGAACATAATATGGTCCCACTTGTAGGC  678

seq1  TACCTTAAGCACGGCATTTCTTTCCAAATGGAAGAAAATCAGCCTCAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAAGCACGGCATTTCTTTCCAAATGGAAGAAAATCAGCCTCAATT  728

seq1  TCAGTTATTTATTGGACAGTTACTACTGCAAGATGCTCTAGGCAAACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATTTATTGGACAGTTACTACTGCAAGATGCTCTAGGCAAACTGG  778

seq1  AAATTTCTCTTTTTTCCCTTTTTCTTTTTTTTGTTTTTTAACTTTTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTCTTTTTTCCCTTTTTCTTTTTTTTGTTTTTTAACTTTTTGTT  828

seq1  GATGCTTTGTGAATTTTACATTTGCAAAATCAAATTAGTAGCTCTCAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTGTGAATTTTACATTTGCAAAATCAAATTAGTAGCTCTCAGTT  878

seq1  CTTCATTTGCTTTCATGTTTATCGAAATGCAAATAGGGCTAACTTGCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTGCTTTCATGTTTATCGAAATGCAAATAGGGCTAACTTGCTGA  928

seq1  TTTACTCATTTATCTATAGAAATAATTAATGACTGTCAACACAGAAACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCATTTATCTATAGAAATAATTAATGACTGTCAACACAGAAACAG  978

seq1  AGCAGCAGCGTTCCCAGCTGGAAACCACTCTAGGCTTCAGAAATGTATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCGTTCCCAGCTGGAAACCACTCTAGGCTTCAGAAATGTATTT  1028

seq1  GCAATTACAATGCAAGGTCATGCCAACATTACAAAAATAGGATTTAATTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTACAATGCAAGGTCATGCCAACATTACAAAAATAGGATTTAATTG  1078

seq1  CATTTGGGTAGAATTATTCCTAATAAATGTATCCAGTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGTAGAATTATTCCTAATAAATGTATCCAGTGAATTC  1121

seq1: chr1_12456489_12457558
seq2: B6Ng01-079A02.g_68_1128

seq1  GAATTCCTAGGTTGTGCTGGGTACAGGAGCTCACCACACTCCCCTATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGTTGTGCTGGGTACAGGAGCTCACCACACTCCCCTATAAG  50

seq1  CAATCTCAGAAATGCAGACTTATCATGGAACTCCTCTGCTTGGAATCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCAGAAATGCAGACTTATCATGGAACTCCTCTGCTTGGAATCCTT  100

seq1  CAGTGGCATTCCATCAAGGTTGTGCCAGAAGTGTTTCTGGAGCGCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCATTCCATCAAGGTTGTGCCAGAAGTGTTTCTGGAGCGCACTGA  150

seq1  CCCTCCAGCATCCTGCCTGTTGCTTTTCTACCATCGCTCTGACATCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGCATCCTGCCTGTTGCTTTTCTACCATCGCTCTGACATCCTGC  200

seq1  CTCTGATTTTCTACATCACTGTTCCCAGCTCATTGGTTCCCTGTAGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTTTCTACATCACTGTTCCCAGCTCATTGGTTCCCTGTAGGGTG  250

seq1  CAGAGCCACCCTGATCACTGTGCTCACTCCTGGTGATGCCCTGCTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCACCCTGATCACTGTGCTCACTCCTGGTGATGCCCTGCTTATTC  300

seq1  AGTCTGGGAGTTGGTGCATGCTCTCCCTCCACTTTGTCATAATCTTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGAGTTGGTGCATGCTCTCCCTCCACTTTGTCATAATCTTTAAC  350

seq1  CTTAGCCCACTTTCCATTCTGTCATTCATCTTCCCCTCCAAAAAGCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCCACTTTCCATTCTGTCATTCATCTTCCCCTCCAAAAAGCTTTC  400

seq1  TCCCCTATTCCAGAAACTTTCCTGAGTCCTCCCAACTCTCTTACAATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTATTCCAGAAACTTTCCTGAGTCCTCCCAACTCTCTTACAATGAT  450

seq1  GAACCAGTCTGCACTGTTATTTCAGTAGCTATCTGAGACTCAGCTATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGTCTGCACTGTTATTTCAGTAGCTATCTGAGACTCAGCTATCTG  500

seq1  AGTATTTACCAAAGTACTCTCATGCTACATTCCCTGACATCTAGCATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTACCAAAGTACTCTCATGCTACATTCCCTGACATCTAGCATTGT  550

seq1  GCCTGAGAAAGAGAAAACTATTTAATGTAGTTTGAGTTTATTTATTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGAAAGAGAAAACTATTTAATGTAGTTTGAGTTTATTTATTAATT  600

seq1  TAATAGCACACCACTGTTCCTCAAACATTGATACATGAAATTGTCCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCACACCACTGTTCCTCAAACATTGATACATGAAATTGTCCTGGC  650

seq1  ATGAGCTTTTCTTTTCTTTTTTTTTTTTCAACAAAACACCTATTTGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTTTCTTTTCTTTTTTTTTTTTCAACAAAACACCTATTTGTTTA  700

seq1  ATGAGTATTCGCTGATAATAAAAAATTAAACTATCTTATGAATAAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATTCGCTGATAATAAAAAATTAAACTATCTTATGAATAAAAAGA  750

seq1  ATTTTTAAAAAGCATGATGTGTTTCTTTGACTTTCTATTGTGATTCTTGT  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTTTTAAAAAGCATGATGTGTTTCTTTGACTTTCTA-TGTGATTCTTGT  799

seq1  TTTATTTCTTTTTTTATTTTTTTAATTAGGTATTTTCTTCATTTACATTT  850
      ||||||||||||||   |||||||||||||||||||||||| ||||||||
seq2  TTTATTTCTTTTTT--ATTTTTTAATTAGGTATTTTCTTCA-TTACATTT  846

seq1  CAAATGCTATCCCAAAAGTTGCCCCATACCCCGCACTCCCTTCCCCCACC  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAAATGCTATCCCAAAAGTTGCCCCATA-CCCGCACTCCCTTCCCCCACC  895

seq1  CCCTACTCCCACTTCTT-GGCCCTGGCATTCCCCTGTACTGAGGCATATA  949
      ||||||||||||||||| |||||||||||| |||||  ||||||||||| 
seq2  CCCTACTCCCACTTCTTGGGCCCTGGCATT-CCCTGGTCTGAGGCATAT-  943

seq1  AAGTTTGCAAGACCTATGGACCTC-TCTTTTCAATGATGGCCGACTAGGC  998
      |||||||| ||||||||||||||| ||||||||||||||| |||||||||
seq2  AAGTTTGC-AGACCTATGGACCTCTTCTTTTCAATGATGGGCGACTAGGC  992

seq1  CATC-TTCTGATACATATGCAGGTAGAAACACAAGCTCTGTGGGGGGTAC  1047
      |||| ||||||| ||||||||||||| ||||| |||||||| ||||||||
seq2  CATCTTTCTGAT-CATATGCAGGTAG-AACAC-AGCTCTGT-GGGGGTAC  1038

seq1  T-GGTTAGTTCATATTGTTGTTCT  1070
      | ||| |||||||| |||||||||
seq2  TGGGTAAGTTCATA-TGTTGTTCT  1061