BAC Information

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BAC

Clone NameB6Ng01-079A21
Chromosome1 (Build37)
Map Location 66,109,300 - 66,255,467
singlet/doubletdoublet
Overlap geneEG667786, Mtap2
Upstream geneCrygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781
Downstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079A21.bB6Ng01-079A21.g
ACCDH894577DH894578
length1,1741,153
definitionDH894577|Mus musculus domesticus DNA, BAC clone: B6Ng01-079A21, 5' end.DH894578|Mus musculus domesticus DNA, BAC clone: B6Ng01-079A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,109,300 - 66,110,481)(66,254,311 - 66,255,467)
sequence
gaattcaaaagcactaacaagagtctgggttggactggctgctggggagt
ttgtgacatactaggtgacacccctggagtcacttcgcttcaactccagc
ttggaagtgcctgcctggctcagggtctgcactgcagcctactccttgct
ccagggcctgactgcagggccagagcctatcccatagaggcacgacagca
gccactcaaaccaaccacacctcccaggcaaactgaaccatgaacaccga
aacgtatcagacccccatggaggtggtggtctatcagctgcacactttct
ccatctccttcttctcttctctgcttgaaggggatgtggtttccgataaa
ctggataacagtgcctccggagccagtgtggtggccctagacaacaagat
tgagcaggccatggatctagtgaggaatcttctgatgtgagagaggaggt
ggaggtcataaaggagcagatttgtgagctggttgagaagaactcccagc
tggaactcgagaataccctcctgaagtcgctggcatgcccagagcaactg
gaaaagttccagtcccagctgagccccaaagagccagcacctgaaacccc
agaaacccggaaaccctgaaaactccggaagcccctggtggttctgccgt
gtaagtggctctgtccttagggtgggcagagacacaacttgttctaccta
gttctttccagtttgttttttggctccccaagcgtcatctcatgtggaga
actttacacctaacatagctggtaccaagagatgtctcaaggacatgccc
atcttggtccactccagtgacagacccctgacaaagagcaggtctctgga
gactgagttgcatggggcctagtaacaccaagccagtaggcctgtcatgt
caccgggacctggagctcccagagcctggcaacttagttacagctgacca
aggagaaagtacttttgagatgtgatgccagtgtgctccagaaagtataa
ggggtctgttttttcatttccatggacatcttccacagcttcacctgaca
acggctgttcctatgagaaagcatgtgtttctaagcagaaagcacctcct
ccctcttgtctctccagcaggcagagattgggagaaaatgaaccaaatga
gccttcgttgattaatactaggta
gaattccctgctgctagcactgagaaacaaattgctttaagttgaaggcc
ctcagccagcctgtgttctttgttagagtagactaaactgactaaaatag
gattggacactcacattaagaagaattcaggacagatgaatagccctctg
actagtatgtaaatgtttgctatgacatatttataaacccaatactacta
tatattattttaagttccatatttttaaataaactcgttttctatgtatg
gaaaaatttaagatatcaagtattcggtaagtatgcttatgatttttcta
acataggtctggaagatgtcttaggatttcaactgctgtgaaaaaccacc
atgactatgttctaggctgtcatattatggtagtcaggtcagggaagagc
aagcttgttgtccaaaaccaaatatcaagtcctgaaaacatgcacacaac
taacattatataggttgaatgagttatatttatatatttagaaatatata
tattaattgagaacatattatttatcatcatatatatacatatattaaat
gtgatagatagatagatagatagatagatagatagatagatagatagata
gatttaaaggctatgaatttaaaatagaatgaagaaaggtatataggagg
ctttagagggaagaaaggaaaggagggaaatgaagaaattatatttcaat
ctcaaaaataaaaaaggcattaaaaaacatgaacactattaaacttgtgg
aggaaatggatttattttcatctgcaactcttaggttacattccatcact
gagggaagtcagggcaaggactcaaggcagaaatattggagataggaatt
gaaggagaaaccgtagaggaataggcttactgacttgctccccgtgggtt
ggtttgtctgctttttcataaaatctcagacctcctgcccagggctgact
tctactcacatgaactgagccttcccatacaattatcattcaatgaaatg
ctccacacggttaccataggtcaactttgtgtgggcttttttttgctcat
cgaagtaagcacaacagttagcctttacttgtaaagaattgcattacaaa
gattattaaccagaatttgggtttacttgcaaaggcacagcctcttggtt
act
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66109300_66110481
seq2: B6Ng01-079A21.b_48_1221

seq1  GAATTCAAAAGCACTAACAAGAGTCTGGGTTGGACTGGCTGCTGGGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGCACTAACAAGAGTCTGGGTTGGACTGGCTGCTGGGGAGT  50

seq1  TTGTGACATACTAGGTGACACCCCTGGAGTCACTTCGCTTCAACTCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACATACTAGGTGACACCCCTGGAGTCACTTCGCTTCAACTCCAGC  100

seq1  TTGGAAGTGCCTGCCTGGCTCAGGGTCTGCACTGCAGCCTACTCCTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTGCCTGCCTGGCTCAGGGTCTGCACTGCAGCCTACTCCTTGCT  150

seq1  CCAGGGCCTGACTGCAGGGCCAGAGCCTATCCCATAGAGGCACGACAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCTGACTGCAGGGCCAGAGCCTATCCCATAGAGGCACGACAGCA  200

seq1  GCCACTCAAACCAACCACACCTCCCAGGCAAACTGAACCATGAACACCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCAAACCAACCACACCTCCCAGGCAAACTGAACCATGAACACCGA  250

seq1  AACGTATCAGACCCCCATGGAGGTGGTGGTCTATCAGCTGCACACTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTATCAGACCCCCATGGAGGTGGTGGTCTATCAGCTGCACACTTTCT  300

seq1  CCATCTCCTTCTTCTCTTCTCTGCTTGAAGGGGATGTGGTTTCCGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCTTCTTCTCTTCTCTGCTTGAAGGGGATGTGGTTTCCGATAAA  350

seq1  CTGGATAACAGTGCCTCCGGAGCCAGTGTGGTGGCCCTAGACAACAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAACAGTGCCTCCGGAGCCAGTGTGGTGGCCCTAGACAACAAGAT  400

seq1  TGAGCAGGCCATGGATCTAGTGAGGAATCTTCTGATGTGAGAGAGGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGCCATGGATCTAGTGAGGAATCTTCTGATGTGAGAGAGGAGGT  450

seq1  GGAGGTCATAAAGGAGCAGATTTGTGAGCTGGTTGAGAAGAACTCCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCATAAAGGAGCAGATTTGTGAGCTGGTTGAGAAGAACTCCCAGC  500

seq1  TGGAACTCGAGAATACCCTCCTGAAGTCGCTGGCATGCCCAGAGCAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCGAGAATACCCTCCTGAAGTCGCTGGCATGCCCAGAGCAACTG  550

seq1  GAAAAGTTCCAGTCCCAGCTGAGCCCCAAAGAGCCAGCACCTGAAACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTCCAGTCCCAGCTGAGCCCCAAAGAGCCAGCACCTGAAACCCC  600

seq1  AGAAACCCGGAAACCCTGAAAACTCCGGAAGCCCCTGGTGGTTCTGCCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCGGAAACCCTGAAAACTCCGGAAGCCCCTGGTGGTTCTGCCGT  650

seq1  GTAAGTGGCTCTGTCCTTAGGGTGGGCAGAGACACAACTTGTTCTACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGGCTCTGTCCTTAGGGTGGGCAGAGACACAACTTGTTCTACCTA  700

seq1  GTTCTTTCCAGTTTGTTTTTTGGCTCCCCAAGCGTCATCTCATGTGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCCAGTTTGTTTTTTGGCTCCCCAAGCGTCATCTCATGTGGAGA  750

seq1  ACTTTACACCTAACATAGCTGGTACCAAGAGATGTCTCAAGGACATGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACACCTAACATAGCTGGTACCAAGAGATGTCTCAAGGACATGCCC  800

seq1  ATCTTGGTCCACTCCAGTGACAGACCCCTGACAAAGAGCAGGTCTCTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTCCACTCCAGTGACAGACCCCTGACAAAGAGCAGGTCTCTGGA  850

seq1  GACTGAGTTGCATGGGGCCTAGTAACACCAAGCCAGTAGGCCTGTCATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGTTGCATGGGGCCTAGTAACACCAAGCCAGTAGGCCTGTCATGT  900

seq1  CACCGGGACCTGGGAGCTCCCAGAGCCTGGGCAACTTAGTTACAGCTGAC  950
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  CACCGGGACCT-GGAGCTCCCAGAGCCT-GGCAACTTAGTTACAGCTGAC  948

seq1  CAAGGAGAAAGTACTTTTGAGATGTGATGCCAGTGTGCTCCAGAAAGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGAAAGTACTTTTGAGATGTGATGCCAGTGTGCTCCAGAAAGTAT  998

seq1  AAGGGGTCTGTTTTTTCATTTCCATGGACATCTTCCACAGCTTCACCTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTCTGTTTTTTCATTTCCATGGACATCTTCCACAGCTTCACCTGA  1048

seq1  CAACGGCTGTTCCTATGAAGAAGCCATTGTGTTCTAAGCAGAAGCAACCT  1100
      ||||||||||||||||||  ||||   ||| ||||||||||||   ||||
seq2  CAACGGCTGTTCCTATGAGAAAGCATGTGT-TTCTAAGCAGAAAGCACCT  1097

seq1  CTCTCTTCTCTGTCTTCTCCAGGCAGGGGCAGAGA-TGGGAGAAAATGAG  1149
      |   | ||| |||| |||||| |||  |||||||| ||||||||||||| 
seq2  CCTCCCTCT-TGTC-TCTCCA-GCA--GGCAGAGATTGGGAGAAAATGAA  1142

seq1  CCAAATGAGCCTTCTGTTGGTTAATACTAGGTA  1182
      |||||||||||||| |||| |||||||||||||
seq2  CCAAATGAGCCTTC-GTTGATTAATACTAGGTA  1174

seq1: chr1_66254311_66255467
seq2: B6Ng01-079A21.g_66_1218 (reverse)

seq1  AGTAACCAAGATGCT-TGCTTTTGCAAGTAAA-CCAAATTCTTGGTTATA  48
      ||||||||||| ||| ||| |||||||||||| ||||||||| | | |||
seq2  AGTAACCAAGAGGCTGTGCCTTTGCAAGTAAACCCAAATTCTGGTTAATA  50

seq1  ATCTTTGTCTATGCCAATTCTTTTCCCAGTTAAGGGCTACTGTTGTGCCT  98
      ||||||||  ||| |||||| ||| | ||| ||||   ||||||||||  
seq2  ATCTTTGT-AATG-CAATTC-TTTACAAGTAAAGGCTAACTGTTGTGC--  95

seq1  TTACTCTGATGGAAGCAAAAAAAGGCCCACACCAAGTTGACCTATGGGTA  148
      |||||  ||||  |||||||||| |||||||| |||||||||||| ||||
seq2  TTACTTCGATG--AGCAAAAAAAAGCCCACACAAAGTTGACCTAT-GGTA  142

seq1  ACCGTGTGGAGCATTTCCTTGATTGATAATTGGTATGGGAAGGCTCAGTT  198
      ||||||||||||||||| |||| |||||||| ||||||||||||||||||
seq2  ACCGTGTGGAGCATTTCATTGAATGATAATT-GTATGGGAAGGCTCAGTT  191

seq1  CATTGTGAGTAG-AGTCAGCCCTGGGCAGGAGGTCTGAGATTATATGAAA  247
      || ||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  CA-TGTGAGTAGAAGTCAGCCCTGGGCAGGAGGTCTGAGATTTTATGAAA  240

seq1  AAGCAGACAGACCAACCCACGGGGAGCAAGTCAGTAAGCCTATTCCTCTA  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACAAACCAACCCACGGGGAGCAAGTCAGTAAGCCTATTCCTCTA  290

seq1  CGGTTTCTCCTTCAATTCCTATCTCC-ATATTTCTGCCTTGAGTCCTTGC  346
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CGGTTTCTCCTTCAATTCCTATCTCCAATATTTCTGCCTTGAGTCCTTGC  340

seq1  CCTGACTTCCCTCAGTGATGGAATGTAACCTAAGAGTTGCAGATG-AAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTGACTTCCCTCAGTGATGGAATGTAACCTAAGAGTTGCAGATGAAAAT  390

seq1  AAATCCA-TTCCTCCACAAG-TTAATAGTGTTCATGTTTTTTAATTGCCT  443
      ||||||| |||||||||||| ||||||||||||||||||||||| |||||
seq2  AAATCCATTTCCTCCACAAGTTTAATAGTGTTCATGTTTTTTAA-TGCCT  439

seq1  TTTTTATTTTTGAGATTGAAATATAATTTCTTCATTTCCCTCCTTTCCTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTGAGATTGAAATATAATTTCTTCATTTCCCTCCTTTCCTT  489

seq1  TCTTCCCTCTAAAGCCTCCTATATACCTTTCTTCATTCTATTTTAAATTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCTAAAGCCTCCTATATACCTTTCTTCATTCTATTTTAAATTC  539

seq1  ATAGCCTTTAAATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTTTAAATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  589

seq1  TATCTATCTATCACATTTAATATATGTATATATATGATGATAAATAATAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCACATTTAATATATGTATATATATGATGATAAATAATAT  639

seq1  GTTCTCAATTAATATATATATTTCTAAATATATAAATATAACTCATTCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAATTAATATATATATTTCTAAATATATAAATATAACTCATTCAA  689

seq1  CCTATATAATGTTAGTTGTGTGCATGTTTTCAGGACTTGATATTTGGTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATAATGTTAGTTGTGTGCATGTTTTCAGGACTTGATATTTGGTTT  739

seq1  TGGACAACAAGCTTGCTCTTCCCTGACCTGACTACCATAATATGACAGCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAACAAGCTTGCTCTTCCCTGACCTGACTACCATAATATGACAGCC  789

seq1  TAGAACATAGTCATGGTGGTTTTTCACAGCAGTTGAAATCCTAAGACATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATAGTCATGGTGGTTTTTCACAGCAGTTGAAATCCTAAGACATC  839

seq1  TTCCAGACCTATGTTAGAAAAATCATAAGCATACTTACCGAATACTTGAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACCTATGTTAGAAAAATCATAAGCATACTTACCGAATACTTGAT  889

seq1  ATCTTAAATTTTTCCATACATAGAAAACGAGTTTATTTAAAAATATGGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAATTTTTCCATACATAGAAAACGAGTTTATTTAAAAATATGGAA  939

seq1  CTTAAAATAATATATAGTAGTATTGGGTTTATAAATATGTCATAGCAAAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATAATATATAGTAGTATTGGGTTTATAAATATGTCATAGCAAAC  989

seq1  ATTTACATACTAGTCAGAGGGCTATTCATCTGTCCTGAATTCTTCTTAAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATACTAGTCAGAGGGCTATTCATCTGTCCTGAATTCTTCTTAAT  1039

seq1  GTGAGTGTCCAATCCTATTTTAGTCAGTTTAGTCTACTCTAACAAAGAAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTCCAATCCTATTTTAGTCAGTTTAGTCTACTCTAACAAAGAAC  1089

seq1  ACAGGCTGGCTGAGGGCCTTCAACTTAAAGCAATTTGTTTCTCAGTGCTA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGGCTGAGGGCCTTCAACTTAAAGCAATTTGTTTCTCAGTGCTA  1139

seq1  GCAGCAGGGAATTC  1157
      ||||||||||||||
seq2  GCAGCAGGGAATTC  1153