BAC Information

Click to search

BAC

Clone NameB6Ng01-079I13
Chromosome1 (Build37)
Map Location 39,117,321 - 39,266,463
singlet/doubletdoublet
Overlap geneNpas2
Upstream geneRev1, EG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
Downstream geneLOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079I13.bB6Ng01-079I13.g
ACCDH894915DH894916
length1,1841,140
definitionDH894915|Mus musculus domesticus DNA, BAC clone: B6Ng01-079I13, 5' end.DH894916|Mus musculus domesticus DNA, BAC clone: B6Ng01-079I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,265,274 - 39,266,463)(39,117,321 - 39,117,999)
sequence
gaattccagcctcttgtttctctcttggtttcctggtcatgagatgaata
accagacccatcacatgattctaccatgtgtcacagtaagcccccaaaca
ggggaatcagtcatggactggaaccttcagaactgatccaacataaactt
ttcatatttgttgtctcagggttttgttatagtaaaagcaagttggaaaa
cacgcttgccttgccttattgaaactctgaggtactcttgaatcattaac
tcaacacattgtttcatggttgacccttaaaaactcaaccttctgtatca
caccattggtctacaaagcaacttgtctactctttgtcagactgtctgtc
tatgtatctatgtatctatctgtgtatgtatataagtatctatctatgta
tctatcatctatgtatctatgaatctgtctgtatatgtatgtatatatct
atgcacctgtcatctacctatgtatctacctatctacatatctatgtatc
tatgtctgtttgtctgtctgtctatctgtctctgtgtgtgtatctatcca
cttatccatctttctgcagtgcttggaccaaatctatgggctttgtaaat
gctagacctgtgttccactattgagccatatctttcacttggcttgtcac
cttttctatgtgacacttttccttaattaattttattgttgatttcttag
agctttaaaactatatatgcaagcatccttgttttgtgccctttcacatg
cagcctgaaataattctgacagatgttactaaagagttctgaaaggaaaa
aacagaaatttcttgagctccttctagggaggtgctgagtggctaacttt
aacactttgttaagcaagattgcagggataactttgatggtgtgtgttcg
tatggatgtcagactatagacaagccaagtatcttgatgtttacagattt
tctttgttttcaaattggtggtggcaaaaggtagacaatatgtacagatc
tagtagagtttctgttgctctcagaagggagaaatacttttgtctgcagt
tgccaagcgacagagcagaaaggagggctgaaacttctgttctaccttta
gttaatatagttagatctcccgcagagaattcctcgaacttaaattagaa
acacacctggtaaagagagatctcctgtcactgg
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
ggagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacccccttctcaatagtcacaaataatataaaatatctcggag
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagcctacctgttttctaatcaggg
ggacttgaactcagttctctgtttacttctagctgtgtgacttcaggcaa
atggcttgccctctctgagtttcagttgcattatctacaaatggagagtt
atgggaatatctatcccatttggatgtaggagcatgtaatgaatagtgcg
tgtaaagtactgagtgtgtatccgagatattcactaatagacatataaga
cagacatctttgtgctctggtcaggtgtagtctgggtgcccctccaaggt
tatatgtaagtcccaagtctcctaggtgatgtatggaaacctcatggacc
tcatagtagacacaaggtctgtgggttaataagccatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_39265274_39266463
seq2: B6Ng01-079I13.b_48_1231 (reverse)

seq1  CCAGTGACAGGAG-TC-ATCTTTTCCAGGT-TGTTTCTTAATTTAAGTCT  47
      ||||||||||||| ||  ||||| |||||| |||||| |||||||||| |
seq2  CCAGTGACAGGAGATCTCTCTTTACCAGGTGTGTTTC-TAATTTAAGT-T  48

seq1  GGAGGAATACCTCTGC-GGAGATCTACTTAT-TTTACTAAGGGTAGAACA  95
       |||||||  |||||| |||||||||  ||| || ||||| |||||||||
seq2  CGAGGAAT-TCTCTGCGGGAGATCTAACTATATTAACTAAAGGTAGAACA  97

seq1  GGAGGCTCCAGCCCT-CTTTCTGCTCTGACGGCTTTGGCAACTGCAGACA  144
       || | | ||||||| |||||||||||| ||   ||||||||||||||||
seq2  -GAAGTTTCAGCCCTCCTTTCTGCTCTGTCG--CTTGGCAACTGCAGACA  144

seq1  GAGGTATATCTTCCTGTCTGAGAGCAACAGAGACTCTACTAGATCTGTTA  194
       | |||| ||| ||| ||||||||||||||| ||||||||||||||| ||
seq2  AAAGTATTTCTCCCT-TCTGAGAGCAACAGAAACTCTACTAGATCTG-TA  192

seq1  CATATTTGTCTACCTTTTTGCCACCACCAATTTTGAAAACAAAGAAAATC  244
      |||| ||||||||| ||||||||||||||| |||||||||||||||||||
seq2  CATA-TTGTCTACC-TTTTGCCACCACCAA-TTTGAAAACAAAGAAAATC  239

seq1  TGTAAACATCAAGATAACTTGGCTTGTCTTATGTCTGACATCCATACGAA  294
      ||||||||||||||| |||||||||||||   ||||||||||||||||||
seq2  TGTAAACATCAAGAT-ACTTGGCTTGTCTATAGTCTGACATCCATACGAA  288

seq1  CACACACCATCAAGTTTATCCCTGCAATCTTGCTTAACAAAGTGTTTAAG  344
      |||||||||||||  ||||||||||||||||||||||||||||||| |||
seq2  CACACACCATCAAAGTTATCCCTGCAATCTTGCTTAACAAAGTGTTAAAG  338

seq1  TTAGCCACTCAGCACCTCCCTAGAAGGAGCTCAAGAAATTTCTGTTTTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCACTCAGCACCTCCCTAGAAGGAGCTCAAGAAATTTCTGTTTTTT  388

seq1  TCCTTCAGAACTCTTTAGTAACATCTGTCAGAATTATTTCAGGCTGCATG  444
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGAACTCTTTAGTAACATCTGTCAGAATTATTTCAGGCTGCATG  438

seq1  TGAAAGGGCACAAAACAAGGATGCTTGCATATATAGTTTTAAAGCTCTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGCACAAAACAAGGATGCTTGCATATATAGTTTTAAAGCTCTAA  488

seq1  GAAATCAACAATAAAATTAATTAAGGAAAAGTGTCACATAGAAAAGGTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAACAATAAAATTAATTAAGGAAAAGTGTCACATAGAAAAGGTGA  538

seq1  CAAGCCAAGTGAAAGATATGGCTCAATAGTGGAACACAGGTCTAGCATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAGTGAAAGATATGGCTCAATAGTGGAACACAGGTCTAGCATTT  588

seq1  ACAAAGCCCATAGATTTGGTCCAAGCACTGCAGAAAGATGGATAAGTGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCCATAGATTTGGTCCAAGCACTGCAGAAAGATGGATAAGTGGA  638

seq1  TAGATACACACACAGAGACAGATAGACAGACAGACAAACAGACATAGATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACACACACAGAGACAGATAGACAGACAGACAAACAGACATAGATA  688

seq1  CATAGATATGTAGATAGGTAGATACATAGGTAGATGACAGGTGCATAGAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATATGTAGATAGGTAGATACATAGGTAGATGACAGGTGCATAGAT  738

seq1  ATATACATACATATACAGACAGATTCATAGATACATAGATGATAGATACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATACATATACAGACAGATTCATAGATACATAGATGATAGATACA  788

seq1  TAGATAGATACTTATATACATACACAGATAGATACATAGATACATAGACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATACTTATATACATACACAGATAGATACATAGATACATAGACA  838

seq1  GACAGTCTGACAAAGAGTAGACAAGTTGCTTTGTAGACCAATGGTGTGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTGACAAAGAGTAGACAAGTTGCTTTGTAGACCAATGGTGTGAT  888

seq1  ACAGAAGGTTGAGTTTTTAAGGGTCAACCATGAAACAATGTGTTGAGTTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGTTGAGTTTTTAAGGGTCAACCATGAAACAATGTGTTGAGTTA  938

seq1  ATGATTCAAGAGTACCTCAGAGTTTCAATAAGGCAAGGCAAGCGTGTTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCAAGAGTACCTCAGAGTTTCAATAAGGCAAGGCAAGCGTGTTTT  988

seq1  CCAACTTGCTTTTACTATAACAAAACCCTGAGACAACAAATATGAAAAGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGCTTTTACTATAACAAAACCCTGAGACAACAAATATGAAAAGT  1038

seq1  TTATGTTGGATCAGTTCTGAAGGTTCCAGTCCATGACTGATTCCCCTGTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTGGATCAGTTCTGAAGGTTCCAGTCCATGACTGATTCCCCTGTT  1088

seq1  TGGGGGCTTACTGTGACACATGGTAGAATCATGTGATGGGTCTGGTTATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTTACTGTGACACATGGTAGAATCATGTGATGGGTCTGGTTATT  1138

seq1  CATCTCATGACCAGGAAACCAAGAGAGAAACAAGAGGCTGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATGACCAGGAAACCAAGAGAGAAACAAGAGGCTGGAATTC  1184

seq1: chr1_39117321_39117999
seq2: B6Ng01-079I13.g_548_1208

seq1  TATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAG  50

seq1  AAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAA  100

seq1  AAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATC  150

seq1  AAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATT  200

seq1  CATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATA  250

seq1  AAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGC  300

seq1  CTACCTGTTTTCTAATCAGGGGGACTTGAACTCAGTTCTCTGTTTACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGTTTTCTAATCAGGGGGACTTGAACTCAGTTCTCTGTTTACTTC  350

seq1  TAGCTGTGTGACTTCAGGCAAATGGCTTGCCCTCTCTGAGTTTCAGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGTGACTTCAGGCAAATGGCTTGCCCTCTCTGAGTTTCAGTTGC  400

seq1  ATTATCTACAAATGGAGAGTTATGGGAATATCTATCCCATTTGGATGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTACAAATGGAGAGTTATGGGAATATCTATCCCATTTGGATGTAG  450

seq1  GAGCATGTAATGAAATAGTGCGTGTAAAGTACTGAGTGTGTATCCGAAGA  500
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  GAGCATGTAATG-AATAGTGCGTGTAAAGTACTGAGTGTGTATCCG-AGA  498

seq1  TATTCACTAATAGACATATAAAGACCAGACATCTTTGTTGCTCTGGTTCA  550
      ||||||||||||||||||| |||| |||||||||||| |||||||| |||
seq2  TATTCACTAATAGACATAT-AAGA-CAGACATCTTTG-TGCTCTGG-TCA  544

seq1  GGTGTAGTCTGAGTGCCCCTCCAAGGTCTATATGTAAAGTCCCATATGTC  600
      ||||||||||| ||||||||||||||| ||||||| |||||||  | |||
seq2  GGTGTAGTCTGGGTGCCCCTCCAAGGT-TATATGT-AAGTCCC--AAGTC  590

seq1  TCTAAGGTGATGGTATGGAAACCTCAGTGGACCTCATTTAGGTAAGACAC  650
      ||  ||||||| |||||||||||||| |||||||||  |||   ||||||
seq2  TCCTAGGTGAT-GTATGGAAACCTCA-TGGACCTCA--TAG--TAGACAC  634

seq1  AAAAGTTCTGTGGGTCATTAAGCCATCTC  679
        ||| ||||||||| | |||||||||||
seq2  --AAGGTCTGTGGGTTAATAAGCCATCTC  661