BAC Information

Click to search

BAC

Clone NameB6Ng01-079J19
Chromosome1 (Build37)
Map Location 157,716,342 - 157,888,414
singlet/doubletdoublet
Overlap geneCep350, LOC676894, Tor1aip1, Ifrg15
Upstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6
Downstream geneTor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079J19.bB6Ng01-079J19.g
ACCDH894970DH894971
length1,165193
definitionDH894970|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J19, 5' end.DH894971|Mus musculus domesticus DNA, BAC clone: B6Ng01-079J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,716,342 - 157,717,525)(157,888,222 - 157,888,414)
sequence
gaattcactatgtagagcaggacttgaattcacagagacccatctgcctc
tgcctcctcctagtactgggactaaagacttgagttacaacactgccttg
tatgttgttttgtttctgaggttcactggctgtaaatttcttaagaaata
gaagttaggggaaattgagtacaactagtcagaaggtcagaatcactacc
actgctgcctgcttattaaaatgcccactctttactaaccaccagaactt
taatacatcgtaactatcactagtatggcattcaagatggaccgtctctc
tagtacatgtctcttccacttggagggctaacctcacttgtgtaactatt
atgtgtagtagctcaaaaaagctcagcactttttattcaggctgtattta
tgtctggcctaaactagactaaaaagatttctagtcaatacatctttaga
gaatgaaagaatgatggatggatccttgctaattattacaaattcttaat
gtctggactaaaatccctactaaataggtagataactcttatcttccata
ttaccttcatcggaattaccaatgatttgacaaattttagtattaatcat
taactaaacatatatgcatgctgggccatctagctaggtctttatagaag
gtatagctactcagatctgaaagaaataccgatctaatgtagtttattaa
atctgtgaccaataaatcttttttcatataaattgccatgtatatttatt
tctctatgacataacgtcccttttcatttgtacttagctattcagccaag
tgctgagtgagatggatcatgtggcactttttctggacatttctatcaat
gaaatattctttacaactttgtaacttttttttgagacaggatttagtat
gtagcatggactaagctcaacttgagatcctcctgcctcaaattcccgag
tactaggattataacatgagcattttagcaacattattgactcgtattat
ttccagtatgactttatggcttcacagtgcatgactattcagaaaaagct
caattcttagtctagccatagtctgatgtcacctcccctttaaactttct
ccccctgcttctacatggactccaggtagagccactggcttatctaattc
ttaagctagaggtgc
tcgtttacatttcaaaacttttaagtaaatttacctttcatctgaagtcc
ctatcaaaaatctactctcatcttgtttcgttttacgcttgaaagactcc
aggtatattctcagcaccctcccggaaattacagacccatcccaacctac
ctcgatttctgtttgtgccgtaggggaggtgggggtggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_157716342_157717525
seq2: B6Ng01-079J19.b_49_1213

seq1  GAATTCACTATGTAGAGCAGGACTTGAATTCACAGAGACCCATCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGAGCAGGACTTGAATTCACAGAGACCCATCTGCCTC  50

seq1  TGCCTCCTCCTAGTACTGGGACTAAAGACTTGAGTTACAACACTGCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTCCTAGTACTGGGACTAAAGACTTGAGTTACAACACTGCCTTG  100

seq1  TATGTTGTTTTGTTTCTGAGGTTCACTGGCTGTAAATTTCTTAAGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTTTTGTTTCTGAGGTTCACTGGCTGTAAATTTCTTAAGAAATA  150

seq1  GAAGTTAGGGGAAATTGAGTACAACTAGTCAGAAGGTCAGAATCACTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAGGGGAAATTGAGTACAACTAGTCAGAAGGTCAGAATCACTACC  200

seq1  ACTGCTGCCTGCTTATTAAAATGCCCACTCTTTACTAACCACCAGAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCCTGCTTATTAAAATGCCCACTCTTTACTAACCACCAGAACTT  250

seq1  TAATACATCGTAACTATCACTAGTATGGCATTCAAGATGGACCGTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATCGTAACTATCACTAGTATGGCATTCAAGATGGACCGTCTCTC  300

seq1  TAGTACATGTCTCTTCCACTTGGAGGGCTAACCTCACTTGTGTAACTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACATGTCTCTTCCACTTGGAGGGCTAACCTCACTTGTGTAACTATT  350

seq1  ATGTGTAGTAGCTCAAAAAAGCTCAGCACTTTTTATTCAGGCTGTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAGTAGCTCAAAAAAGCTCAGCACTTTTTATTCAGGCTGTATTTA  400

seq1  TGTCTGGCCTAAACTAGACTAAAAAGATTTCTAGTCAATACATCTTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGCCTAAACTAGACTAAAAAGATTTCTAGTCAATACATCTTTAGA  450

seq1  GAATGAAAGAATGATGGATGGATCCTTGCTAATTATTACAAATTCTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAGAATGATGGATGGATCCTTGCTAATTATTACAAATTCTTAAT  500

seq1  GTCTGGACTAAAATCCCTACTAAATAGGTAGATAACTCTTATCTTCCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGACTAAAATCCCTACTAAATAGGTAGATAACTCTTATCTTCCATA  550

seq1  TTACCTTCATCGGAATTACCAATGATTTGACAAATTTTAGTATTAATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCATCGGAATTACCAATGATTTGACAAATTTTAGTATTAATCAT  600

seq1  TAACTAAACATATATGCATGCTGGGCCATCTAGCTAGGTCTTTATAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAACATATATGCATGCTGGGCCATCTAGCTAGGTCTTTATAGAAG  650

seq1  GTATAGCTACTCAGATCTGAAAGAAATACCGATCTAATGTAGTTTATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCTACTCAGATCTGAAAGAAATACCGATCTAATGTAGTTTATTAA  700

seq1  ATCTGTGACCAATAAATCTTTTTTCATATAAATTGCCATGTATATTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGACCAATAAATCTTTTTTCATATAAATTGCCATGTATATTTATT  750

seq1  TCTCTATGACATAACGTCCC-TTTCATTTGTACTTAGCTATTCAGCCAAG  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTCTATGACATAACGTCCCTTTTCATTTGTACTTAGCTATTCAGCCAAG  800

seq1  TGCTGAGTGAGATGGATCATGTGGCACTTTTTCTGGACATTTCTATCAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTGAGATGGATCATGTGGCACTTTTTCTGGACATTTCTATCAAT  850

seq1  GAAATATTCTTTACAACTTTGTAACTTTTTTTTGAGACAGGATTTAGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTCTTTACAACTTTGTAACTTTTTTTTGAGACAGGATTTAGTAT  900

seq1  GTAGCATGGACTAAGCTCAAACTTGAGATCCTCCTGCCTCAAATTCCCGA  949
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTAGCATGGACTAAGCTC-AACTTGAGATCCTCCTGCCTCAAATTCCCGA  949

seq1  GTACTAGGATTATAACAATGAGCATTTTTTAGCAACATTATTGACTCGTA  999
      |||||||||||||||| |||||||  ||||||||||||||||||||||||
seq2  GTACTAGGATTATAAC-ATGAGCA--TTTTAGCAACATTATTGACTCGTA  996

seq1  ATTTATTTCCAGTATGACTTTAATGGC-TCACAGTTGCATGACTAATCAG  1048
        ||||||||||||||||||| ||||| |||||| |||||||||| ||||
seq2  --TTATTTCCAGTATGACTTT-ATGGCTTCACAG-TGCATGACTATTCAG  1042

seq1  ATAAAGCTCAAATTTCTTAGTCTAGCCATTAAGTTCCTGAATGTCACCTC  1098
      | |||||||||  ||||||||||||||||  |||  ||| ||||||||||
seq2  AAAAAGCTCAA--TTCTTAGTCTAGCCAT--AGT--CTG-ATGTCACCTC  1085

seq1  CACTTTTAAACTTTCTCCCACTGCTTTCCTACATGAACTCCCAGTAGAGC  1148
      | | ||||||||||||||| ||||||  ||||||| |||||  |||||||
seq2  C-CCTTTAAACTTTCTCCCCCTGCTT--CTACATGGACTCCAGGTAGAGC  1132

seq1  CACT-GCTTATTCTAAATTCCCTAGAGCTAGAGGTGC  1184
      |||| ||||| ||||| |   ||  ||||||||||||
seq2  CACTGGCTTA-TCTAATT---CTTAAGCTAGAGGTGC  1165

seq1: chr1_157888222_157888414
seq2: B6Ng01-079J19.g_76_268 (reverse)

seq1  CCTCCCCACCCCCACCTCCCCTACGGCACAAACAGAAATCGAGGTAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCACCCCCACCTCCCCTACGGCACAAACAGAAATCGAGGTAGGTT  50

seq1  GGGATGGGTCTGTAATTTCCGGGAGGGTGCTGAGAATATACCTGGAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGTCTGTAATTTCCGGGAGGGTGCTGAGAATATACCTGGAGTCT  100

seq1  TTCAAGCGTAAAACGAAACAAGATGAGAGTAGATTTTTGATAGGGACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCGTAAAACGAAACAAGATGAGAGTAGATTTTTGATAGGGACTTC  150

seq1  AGATGAAAGGTAAATTTACTTAAAAGTTTTGAAATGTAAACGA  193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGGTAAATTTACTTAAAAGTTTTGAAATGTAAACGA  193