BAC Information

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BAC

Clone NameB6Ng01-080B03
Chromosome1 (Build37)
Map Location 115,213,732 - 115,214,928
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080B03.bB6Ng01-080B03.g
ACCDH895309DH895310
length1,214570
definitionDH895309|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B03, 5' end.DH895310|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagagtgtgcagcctcaagctgcaagcaaatgagtgagagggaaa
gagagcagagaatgagagagaagagaaagaaactttaagccttgaaatat
tgcctgtcagcttgtacccaaaagagtagtctgtgtatatttactatgtg
cattccagatatttctgcttccagttgtgatctctgatcctgtgtcaagg
ctggaccccagcataaaccactaaagtaatgtggctgccaaaaatatgta
ctggaggagcaggtagaagttagacatatggtagacagagtcctgactga
ggttggcacatgtgaggagaatccaggatgtatgttagagactaaacagt
ggcaatagtagactaagtgaactggttgcctagtggatgaatacagatgg
acaacatcagatgtttataaacccacagatgaagagacatgaaaaaatag
tcccacttcacttggaagagaaattaaacaaactggattctacccgacca
cttagagtacaaaaacagcagacagtaagtgaaaaagaagttgaaattat
tactcatgttcacagtagcaatgacagtgggcagcatacacatgaaaaga
gactccttgattaatagagaatacaagagctgcaagcacaactagcttac
ctctatgggtcttggatttcatcatggaattcctgaaaatcttggctgtc
tcagttctgagcctatactgaaacatgagtctaaagaataagttattgcc
ttgcaaacagaagggggccccaaaacactgatttcttttttttttttttt
ctgttttacagatattacaactacacagtgataggataatgaaatatcag
tgataatataatacattatatattaaaataactattgtttataactttaa
atttcatagtagtcacataataaaaactaaaagaaaattgctgaagtaaa
ctttaatatatgtactataacctaatgactttcaaaattaattattttaa
cataaaaagttagtaaggtattttatggaattttttttctaggtattgaa
atctttttgtaggattcaccataatgggaacactcctaaaaatccaaagg
agattggaatacactcctgccattcccggaacctcaggaggctaaggtag
ggggacacataggtttcaggcaggctcaggcctcacataaccaagaaagg
actctggttaaaaa

acatcctgccacagttccagtgctctgggcaggtggatgcaagaagactg
ggcatctggctgtgttaagccactgtccccacacaggtggtagacaaggg
tggggggcccaggtaccaagttctcagcctatgtcatcccacactggata
cagcagaggacctgagaacagaataggggccccagggcagcactcgtcct
cagagataagggaagagagcagggggagaggtgggtgctgggtatggctg
ctgcataggaaggccttctgttgggaggttagacccggttctttagaaga
aagcctatcccatccttcaagcatggcaggccttgatggtcagagagtct
atggttttagagctttactgtagcagggagaaaggagagaaggtagaaaa
aaacagagactggctatggccatgtggagagaaggggggaagagagagag
aaagaaggctagagagtaagagaggtaaaagcttagagagagggggtggg
cccaagcagcccctcttatagtgggtaggcctatcaggctgttgctagat
aactgtgggggtggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_115213732_115214928
seq2: B6Ng01-080B03.b_45_1258

seq1  GAATTCAGAGTGTGCAGCCTCAAGCTGCAAGCAAATGAGTGAGAGGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTGTGCAGCCTCAAGCTGCAAGCAAATGAGTGAGAGGGAAA  50

seq1  GAGAGCAGAGAATGAGAGAGAAGAGAAAGAAACTTTAAGCCTTGAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGAGAATGAGAGAGAAGAGAAAGAAACTTTAAGCCTTGAAATAT  100

seq1  TGCCTGTCAGCTTGTACCCAAAAGAGTAGTCTGTGTATATTTACTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCAGCTTGTACCCAAAAGAGTAGTCTGTGTATATTTACTATGTG  150

seq1  CATTCCAGATATTTCTGCTTCCAGTTGTGATCTCTGATCCTGTGTCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGATATTTCTGCTTCCAGTTGTGATCTCTGATCCTGTGTCAAGG  200

seq1  CTGGACCCCAGCATAAACCACTAAAGTAATGTGGCTGCCAAAAATATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCCCAGCATAAACCACTAAAGTAATGTGGCTGCCAAAAATATGTA  250

seq1  CTGGAGGAGCAGGTAGAAGTTAGACATATGGTAGACAGAGTCCTGACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAGCAGGTAGAAGTTAGACATATGGTAGACAGAGTCCTGACTGA  300

seq1  GGTTGGCACATGTGAGGAGAATCCAGGATGTATGTTAGAGACTAAACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCACATGTGAGGAGAATCCAGGATGTATGTTAGAGACTAAACAGT  350

seq1  GGCAATAGTAGACTAAGTGAACTGGTTGCCTAGTGGATGAATACAGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAGTAGACTAAGTGAACTGGTTGCCTAGTGGATGAATACAGATGG  400

seq1  ACAACATCAGATGTTTATAAACCCACAGATGAAGAGACATGAAAAAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCAGATGTTTATAAACCCACAGATGAAGAGACATGAAAAAATAG  450

seq1  TCCCACTTCACTTGGAAGAGAAATTAAACAAACTGGATTCTACCCGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTCACTTGGAAGAGAAATTAAACAAACTGGATTCTACCCGACCA  500

seq1  CTTAGAGTACAAAAACAGCAGACAGTAAGTGAAAAAGAAGTTGAAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGTACAAAAACAGCAGACAGTAAGTGAAAAAGAAGTTGAAATTAT  550

seq1  TACTCATGTTCACAGTAGCAATGACAGTGGGCAGCATACACATGAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGTTCACAGTAGCAATGACAGTGGGCAGCATACACATGAAAAGA  600

seq1  GACTCCTTGATTAATAGAGAATACAAGAGCTGCAAGCACAACTAGCTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTTGATTAATAGAGAATACAAGAGCTGCAAGCACAACTAGCTTAC  650

seq1  CTCTATGGGTCTTGGATTTCATCATGGAATTCCTGAAAATCTTGGCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGGGTCTTGGATTTCATCATGGAATTCCTGAAAATCTTGGCTGTC  700

seq1  TCAGTTCTGAGCCTATACTGAAACATGAGTCTAAAGAATAAGTTATTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTGAGCCTATACTGAAACATGAGTCTAAAGAATAAGTTATTGCC  750

seq1  TTGCAAACAGAAGGGGGCCCCAAAACACTGATTTCTTTTTTTTTTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACAGAAGGGGGCCCCAAAACACTGATTTCTTTTTTTTTTTTTTT  800

seq1  CTGTTTTACAGATATTACAACTACACAGTGATAGGATAATGAAATATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTACAGATATTACAACTACACAGTGATAGGATAATGAAATATCAG  850

seq1  TGATAATATAATACATTATATATTAAAATAACTATTGTTTATAACTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATATAATACATTATATATTAAAATAACTATTGTTTATAACTTTAA  900

seq1  ATTTCATAGTAGTCACATAATAAAAACTAAAAGAAAATTGCTGAAGTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAGTAGTCACATAATAAAAACTAAAAGAAAATTGCTGAAGTAAA  950

seq1  CTTTAATATATGTACTATAACCTAATGACTTTCAAAATTAATTATTTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATATATGTACTATAACCTAATGACTTTCAAAATTAATTATTTTAA  1000

seq1  CATAAAAAGTTAGTAAGGTATTTTATG--AATTTTTTTCTAGTATTTGAA  1048
      |||||||||||||||||||||||||||  | |||||||||||   |||||
seq2  CATAAAAAGTTAGTAAGGTATTTTATGGAATTTTTTTTCTAGGTATTGAA  1050

seq1  ATC-TTTTGTAGATTTCACAATAAT-GGAACA--TCTAAAAAT-CAAAAG  1093
      ||| ||||||||  ||||| ||||| ||||||   |||||||| |||| |
seq2  ATCTTTTTGTAGGATTCACCATAATGGGAACACTCCTAAAAATCCAAAGG  1100

seq1  AGATT-GAATACA--TCTG-CAATCCCAGAA-CTCAGGAGGCTAAGGTAG  1138
      ||||| |||||||   ||| || |||| ||| ||||||||||||||||||
seq2  AGATTGGAATACACTCCTGCCATTCCCGGAACCTCAGGAGGCTAAGGTAG  1150

seq1  GGGGAC-CATAAGTTCAAGGCAAGCTCAGGC--TACATAA-CAAGAAA-G  1183
      |||||| |||| |||  ||||| ||||||||   |||||| ||||||| |
seq2  GGGGACACATAGGTTTCAGGCAGGCTCAGGCCTCACATAACCAAGAAAGG  1200

seq1  ACTCTGTTTAAAAA  1197
      |||||| |||||||
seq2  ACTCTGGTTAAAAA  1214


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