BAC Information

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BAC

Clone NameB6Ng01-080D11
Chromosome1 (Build37)
Map Location 49,687,773 - 49,777,700
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080D11.bB6Ng01-080D11.g
ACCDH895416DH895417
length1,080822
definitionDH895416|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D11, 5' end.DH895417|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,687,773 - 49,689,057)(49,776,882 - 49,777,700)
sequence
tgttcagaagaccagctgaaacaactagtcttgtgtgtggcttaagcaat
ggctagatgtttgtacttcccctttataggtgctcattgttgagttagtt
ggactacaaactgtaagtcattataataaatccccttagtatatggatat
attccatatattctgtgactctagagaaccctgactaatccaagtacgtt
atttgtattgacttaagaagtctttatatagtattatttgtagtaaatat
tagaacttatgctaaatctgtcactttttcttaccatagatgactatttt
ttactgatgtcgtcttttaatgagaagacctatttgtttttttttatgaa
gtcaaagctataacttagctttataattgttgcttacctgagtactcatt
cctgaatttctgcctaacttctggcctgaagatagtttcttattcctggg
agatttattatcgctgattctctcagcagctataacacttcatatatggg
tggggaattatgaaattactatgatacacattttcatgtctactggtatt
gtcattctgtaggtcctatttatgtaaacttactgatgataattcatgtg
tcagccttttctgccatatctagatggtactggctaattaaagagatcct
aatgcattgcaaccacggtcagtgattctctgcattatgaccaattatgt
atcttttatatagtctctatggctacaaagagattactcaataacaggtc
agagttacatttatctcagggtataagaaatagtacaatacactttaaaa
acaatattggcttaggaactaatagtattgggttcttctcagtcaatgtt
tgatcaagacaggacaaccatttattctaatgagaaagatgtctgtgcag
aaataaaactgcagcatttagctatacatgcaaagtagatttaggacttt
atagcactttaaatcagtatttatagttatggtctttgcttgcatctcaa
actcaatggttgaagagaagatgatgaggaagaagaagaggaagtagaag
atgagagaagagaaggctatgccattgcaa
gaattctttgattagttttgtatccatttttaatagcgttttttgattct
ctggagtccaacttcttgagttctttgtatgtatcagatattatcccttt
atgagatgggggactgataaagatcttttccatgtgttttgtttctgggt
tacatcacttggggtgatattttctacttccatccatttgcctgcgaatt
tcatgaagtcattggttaagcagttcaattcatccaaatattttaaaaaa
tatttattattataaatgtctgtttaaatgtaaagccattatagtttaaa
gttatgattatgtattcctataggaatgtagaatataggaagtccagtcc
atcattagtgaagaaaactggaatcaccataataaggattttttgatgaa
ttttatataaatatccatctgttgctggcaaggatgtggagaaggaggaa
cactcctccactgttggtgggaatgcaagcttgtacaaccactctggaaa
tcagtctggtggttgctcataaaattggacatggtactaccggagaatcc
tgcaatacctcgcctggtcatatatccagaagatgttccaactagtaaga
aagaaacatgctccactatgttcatagcagccttatttataatatccaga
agctggaaagaacccagatgccccttaacagaggaatggatacatttttt
ttttacacaatgggagtactactccagctattaaaaagaattaatttatg
aaattcctagggcaaatgggttggacctggagggcattatcctgagtgag
gtaacccaatcacaaaagaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49687773_49689057
seq2: B6Ng01-080D11.b_55_1134

seq1  TGTTCAGAAGACCAGCTGAAACAACTAGTCTTGTGTGTGGCTTAAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAAGACCAGCTGAAACAACTAGTCTTGTGTGTGGCTTAAGCAAT  50

seq1  GGCTAGATGTTTGTACTTCCCCTTTATAGGTGCTCATTGTTGAGTTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGATGTTTGTACTTCCCCTTTATAGGTGCTCATTGTTGAGTTAGTT  100

seq1  GGACTACAAACTGTAAGTCATTATAATAAATCCCCTTAGTATATGGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACAAACTGTAAGTCATTATAATAAATCCCCTTAGTATATGGATAT  150

seq1  ATTCCATATATTCTGTGACTCTAGAGAACCCTGACTAATCCAAGTACGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATATATTCTGTGACTCTAGAGAACCCTGACTAATCCAAGTACGTT  200

seq1  ATTTGTATTGACTTAAGAAGTCTTTATATAGTATTATTTGTAGTAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATTGACTTAAGAAGTCTTTATATAGTATTATTTGTAGTAAATAT  250

seq1  TAGAACTTATGCTAAATCTGTCACTTTTTCTTACCATAGATGACTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTATGCTAAATCTGTCACTTTTTCTTACCATAGATGACTATTTT  300

seq1  TTACTGATGTCGTCTTTTAATGAGAAGACCTATTTGTTTTTTTTTATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGATGTCGTCTTTTAATGAGAAGACCTATTTGTTTTTTTTTATGAA  350

seq1  GTCAAAGCTATAACTTAGCTTTATAATTGTTGCTTACCTGAGTACTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGCTATAACTTAGCTTTATAATTGTTGCTTACCTGAGTACTCATT  400

seq1  CCTGAATTTCTGCCTAACTTCTGGCCTGAAGATAGTTTCTTATTCCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTTCTGCCTAACTTCTGGCCTGAAGATAGTTTCTTATTCCTGGG  450

seq1  AGATTTATTATCGCTGATTCTCTCAGCAGCTATAACACTTCATATATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTATCGCTGATTCTCTCAGCAGCTATAACACTTCATATATGGG  500

seq1  TGGGGAATTATGAAATTACTATGATACACATTTTCATGTCTACTGGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATTATGAAATTACTATGATACACATTTTCATGTCTACTGGTATT  550

seq1  GTCATTCTGTAGGTCCTATTTATGTAAACTTACTGATGATAATTCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTGTAGGTCCTATTTATGTAAACTTACTGATGATAATTCATGTG  600

seq1  TCAGCCTTTTCTGCCATATCTAGATGGTACTGGCTAATTAAAGAGATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTTTCTGCCATATCTAGATGGTACTGGCTAATTAAAGAGATCCT  650

seq1  AATGCATTGCAACCACGGTCAGTGATTCTCTGCATTATGACCAATTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTGCAACCACGGTCAGTGATTCTCTGCATTATGACCAATTATGT  700

seq1  ATC-TTTATATAGTCTCTATGGCTACAAAGAGATTACTCAATAACAGGTC  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATATAGTCTCTATGGCTACAAAGAGATTACTCAATAACAGGTC  750

seq1  AGAGTTACATTTATCTCAGGGTATAAGAAATAGTACAATACAC-TTAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGAGTTACATTTATCTCAGGGTATAAGAAATAGTACAATACACTTTAAAA  800

seq1  ACAATATTGGCTTAAGGAACTAATAGTATTGGGTTCTTCTCAGTCAATG-  847
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  ACAATATTGGCTT-AGGAACTAATAGTATTGGGTTCTTCTCAGTCAATGT  849

seq1  TTGATCAAGACAGGACAACCATTTATTCTAATGAGAAAGATGTCTGTGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGATCAAGACAGGACAACCATTTATTCTAATGAGAAAGATGTCTGTGC-  898

seq1  AGAAATAAAACTGCAGCAATTAGCTATACATGCAAAAGTAAGATTTAAGG  947
      |||||||||||||||||| |||||||||||||| ||||| |||||| |||
seq2  AGAAATAAAACTGCAGCATTTAGCTATACATGC-AAAGT-AGATTT-AGG  945

seq1  ACTTTATAGCACTTTAAAATCAGTATTTATAGTTATGGTCTTTGCTTGCA  997
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTTTATAGCACTTT-AAATCAGTATTTATAGTTATGGTCTTTGCTTGCA  994

seq1  TCTCAGAACTCAATGGTAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  1047
      ||||| ||||||||||| |||   ||||     || |||||  | || ||
seq2  TCTCA-AACTCAATGGTTGAAGAGAAGATGATGAGGAAGAAGAAGAGGAA  1043

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGCTA  1097
      |                      ||||   | || || |||| |  ||||
seq2  G---------------------TAGAA--GATGAGAG-AAGAGAAGGCTA  1069

seq1  TGCCATTTGCAAACATAGGTAGACGGTTAGGTTCACAGAACCAGGGATGA  1147
      ||||| ||||||                                      
seq2  TGCCA-TTGCAA--------------------------------------  1080

seq1  ATATCAACCTAATGAACTGACCTTAAAATCAGTATTTATAGTTATGGTCT  1197
                                                        
seq2  --------------------------------------------------  1080

seq1  TTGCTTGCATCTCAGAAATGAATGGTTTAAATAAATAAATAAATAAATAA  1247
                                                        
seq2  --------------------------------------------------  1080

seq1  ATAAATAAATAAATAAATAAGAGCTATGCCATTTGCAA  1285
                                            
seq2  --------------------------------------  1080

seq1: chr1_49776882_49777700
seq2: B6Ng01-080D11.g_71_892 (reverse)

seq1  AGTTCTTTTGTGATTGGGTTACCTCACTCAGGATAATGCCCTCCAGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTTGTGATTGGGTTACCTCACTCAGGATAATGCCCTCCAGGTCC  50

seq1  AA-CCATTTG-CCTAGGAATTTCATAAATTAATTCTTTTTAATAGCT-GA  97
      || ||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  AACCCATTTGCCCTAGGAATTTCATAAATTAATTCTTTTTAATAGCTGGA  100

seq1  GTAGTACT-CCATTGTGTAAAAAAAAAAATGTATCCATTCCTCTGTTAAG  146
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  GTAGTACTCCCATTGTGT-AAAAAAAAAATGTATCCATTCCTCTGTTAAG  149

seq1  GGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTAT  196
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGGCATCTGGGTTCTTTCCAGCTTCTGGATATTATAAATAAGGCTGCTAT  199

seq1  GAACATAGTGGAGCATGTTTCTTTCTTACTAGTTGGAACATCTTCTGGAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGTGGAGCATGTTTCTTTCTTACTAGTTGGAACATCTTCTGGAT  249

seq1  ATATGACCAGGCGAGGTATTGCAGGATTCTCCGGTAGTACCATGTCCAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACCAGGCGAGGTATTGCAGGATTCTCCGGTAGTACCATGTCCAAT  299

seq1  TTTATGAGCAACCACCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGCAACCACCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCA  349

seq1  TTCCCACCAACAGTGGAGGAGTGTTCCTCCTTCTCCACATCCTTGCCAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACCAACAGTGGAGGAGTGTTCCTCCTTCTCCACATCCTTGCCAGC  399

seq1  AACAGATGGATATTTATATAAAATTCATCAAAAAATCCTTATTATGGTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATGGATATTTATATAAAATTCATCAAAAAATCCTTATTATGGTGA  449

seq1  TTCCAGTTTTCTTCACTAATGATGGACTGGACTTCCTATATTCTACATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTTTCTTCACTAATGATGGACTGGACTTCCTATATTCTACATTC  499

seq1  CTATAGGAATACATAATCATAACTTTAAACTATAATGGCTTTACATTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGAATACATAATCATAACTTTAAACTATAATGGCTTTACATTTAA  549

seq1  ACAGACATTTATAATAATAAATATTTTTTAAAATATTTGGATGAATTGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATTTATAATAATAAATATTTTTTAAAATATTTGGATGAATTGAA  599

seq1  CTGCTTAACCAATGACTTCATGAAATTCGCAGGCAAATGGATGGAAGTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAACCAATGACTTCATGAAATTCGCAGGCAAATGGATGGAAGTAG  649

seq1  AAAATATCACCCCAAGTGATGTAACCCAGAAACAAAACACATGGAAAAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCACCCCAAGTGATGTAACCCAGAAACAAAACACATGGAAAAGA  699

seq1  TCTTTATCAGTCCCCCATCTCATAAAGGGATAATATCTGATACATACAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCAGTCCCCCATCTCATAAAGGGATAATATCTGATACATACAAA  749

seq1  GAACTCAAGAAGTTGGACTCCAGAGAATCAAAAAACGCTATTAAAAATGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAGAAGTTGGACTCCAGAGAATCAAAAAACGCTATTAAAAATGG  799

seq1  ATACAAAACTAATCAAAGAATTC  819
      |||||||||||||||||||||||
seq2  ATACAAAACTAATCAAAGAATTC  822