BAC Information

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BAC

Clone NameB6Ng01-080E17
Chromosome1 (Build37)
Map Location 127,967,872 - 128,109,029
singlet/doubletdoublet
Overlap geneE030049G20Rik
Upstream geneActr3, Slc35f5, Lypd1
Downstream geneLOC383559, Mgat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080E17.bB6Ng01-080E17.g
ACCDH895472DH895473
length1,191404
definitionDH895472|Mus musculus domesticus DNA, BAC clone: B6Ng01-080E17, 5' end.DH895473|Mus musculus domesticus DNA, BAC clone: B6Ng01-080E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,967,872 - 127,969,076)(128,108,620 - 128,109,029)
sequence
gaattctagaccccaacaagctgatgacactaaccgtcacagacaatctc
ttactttttaaaagcatataactcaaaacaaatactattttcatagtata
aacgtggccctctcccagcacacacaggagatactacactgttcatcgta
tagaataataaaatagatgaagtaatgtgtaggatctcaaactgtctgta
caacccacagttaagctgctatatatttgtgtatatgttagagattgtaa
ggatcattcgagaaattaatccaatttctccattttccaggtattagatt
gtgtgacttaagtcacttaaatactttaagtctatgtacatacaattcag
tttggcgaagaaactagagaatatttttctgagagtttggtttgtgctaa
gaaagggaataaagaatatgggtagttgaaaattgattgaatataaagaa
ttagcataaaatacataatggaaacctatgtttgatgcctaggtctaaat
caaaactctaaaatttaatctgtaaatctaacatatcaggaataaatgct
tattatggaacaataggaatttcatgagccaggaagaaattgtgtgaaga
atttcagaaactttgaaaactaatgaagtcaccaggtagactaatattag
aaagacacaccaggctaattcatttctatatatcaataaaaaccaattgg
aaactggagctgacaagaaattccatttgtaaagtaaataagaactgtaa
agtaccaagtaataagacctgataagaaatgggtaagatctaaatgaatg
aaacagaaactatttattgagaaaggaaaggaagaaatggataaagagaa
acatattgtacaaccatgagacaaggacagtgagtgtagaaagacattaa
gatgacatgacaagtctaaaccaaatgtcttctcaacaaagtaacatttt
gtgaaactactcaaaagccattatgagatatatctacgatattagataca
tttcaaatataaagaaattctttaaagataggaacaaccacaggatgagt
tggaaatagtacccctctagtactccaaatagctgtatggctgtagcatg
gatggggtccgatctcaaagacacactgactagactgatagaagataggc
taacctggggtagttctgggaatttttcatagaaaaggaga
acaatttagtgagagaccatgcctcaaaaaatgaagtgggggagcaatca
aagaagacaccacaaattgatgtctgtctccctcatacatgtgcacatac
tcatgcacacatacctgcatgtacacatgtacacatccacaggaacacac
atgtgccatatatatgcacagcttttgagaggatatgtgtaggctacata
tgcatttcatgtcattgagatgagatgtcaggacctgtggattttggtat
cctcaaggttgtctggaactattccccatttgtcagttactttttttatt
gctgtgatagagtagcctggcagaaagcaacaggggaatgtcagggccaa
gaagtgggagtggctgggtaggggagccgggcgggggggtggggcggggg
aagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_127967872_127969076
seq2: B6Ng01-080E17.b_46_1236

seq1  GAATTCTAGACCCCAACAAGCTGATGACACTAACCGTCACAGACAATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACCCCAACAAGCTGATGACACTAACCGTCACAGACAATCTC  50

seq1  TTACTTTTTAAAAGCATATAACTCAAAACAAATACTATTTTCATAGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTAAAAGCATATAACTCAAAACAAATACTATTTTCATAGTATA  100

seq1  AACGTGGCCCTCTCCCAGCACACACAGGAGATACTACACTGTTCATCGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGGCCCTCTCCCAGCACACACAGGAGATACTACACTGTTCATCGTA  150

seq1  TAGAATAATAAAATAGATGAAGTAATGTGTAGGATCTCAAACTGTCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAATAAAATAGATGAAGTAATGTGTAGGATCTCAAACTGTCTGTA  200

seq1  CAACCCACAGTTAAGCTGCTATATATTTGTGTATATGTTAGAGATTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCACAGTTAAGCTGCTATATATTTGTGTATATGTTAGAGATTGTAA  250

seq1  GGATCATTCGAGAAATTAATCCAATTTCTCCATTTTCCAGGTATTAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTCGAGAAATTAATCCAATTTCTCCATTTTCCAGGTATTAGATT  300

seq1  GTGTGACTTAAGTCACTTAAATACTTTAAGTCTATGTACATACAATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTTAAGTCACTTAAATACTTTAAGTCTATGTACATACAATTCAG  350

seq1  TTTGGCGAAGAAACTAGAGAATATTTTTCTGAGAGTTTGGTTTGTGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCGAAGAAACTAGAGAATATTTTTCTGAGAGTTTGGTTTGTGCTAA  400

seq1  GAAAGGGAATAAAGAATATGGGTAGTTGAAAATTGATTGAATATAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAATAAAGAATATGGGTAGTTGAAAATTGATTGAATATAAAGAA  450

seq1  TTAGCATAAAATACATAATGGAAACCTATGTTTGATGCCTAGGTCTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATAAAATACATAATGGAAACCTATGTTTGATGCCTAGGTCTAAAT  500

seq1  CAAAACTCTAAAATTTAATCTGTAAATCTAACATATCAGGAATAAATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCTAAAATTTAATCTGTAAATCTAACATATCAGGAATAAATGCT  550

seq1  TATTATGGAACAATAGGAATTTCATGAGCCAGGAAGAAATTGTGTGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGGAACAATAGGAATTTCATGAGCCAGGAAGAAATTGTGTGAAGA  600

seq1  ATTTCAGAAACTTTGAAAACTAATGAAGTCACCAGGTAGACTAATATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAAACTTTGAAAACTAATGAAGTCACCAGGTAGACTAATATTAG  650

seq1  AAAGACACACCAGGCTAATTCATTTCTATATATCAATAAAAACCAATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACACCAGGCTAATTCATTTCTATATATCAATAAAAACCAATTGG  700

seq1  AAACTGGAGCTGACAAGAAATTCCATTTGTAAAGTAAATAAGAACTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAGCTGACAAGAAATTCCATTTGTAAAGTAAATAAGAACTGTAA  750

seq1  AGTACCAAGTAATAAGACCTGATAAGAAATGGGTAAGATCTAAATGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAAGTAATAAGACCTGATAAGAAATGGGTAAGATCTAAATGAATG  800

seq1  AAACAGAAACTATTTATTGAGAAAGGAAAGGAAGAAATGGATAAAGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAACTATTTATTGAGAAAGGAAAGGAAGAAATGGATAAAGAGAA  850

seq1  ACATATTGTACAACCATGAGACAAGGACAGTGAGTGTAGAAAGACATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGTACAACCATGAGACAAGGACAGTGAGTGTAGAAAGACATTAA  900

seq1  GATGACATGACAAGTCTAAAACCAAATGTCTTCTCAACAAAAGTAACATT  950
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  GATGACATGACAAGTCT-AAACCAAATGTCTTCTCAAC-AAAGTAACATT  948

seq1  TTGTGAAACTACTCAAAAAGCCAATTATGAGATATATCTACGATATTAGA  1000
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  TTGTGAAACTACTC-AAAAGCC-ATTATGAGATATATCTACGATATTAGA  996

seq1  TACATTTTCAAATATAAAGAAAATCTTTAAAGATTAAGAACAA-CACAGG  1049
      |||| ||||||||||||||||| |||||||||| || |||||| ||||||
seq2  TACA-TTTCAAATATAAAGAAATTCTTTAAAGA-TAGGAACAACCACAGG  1044

seq1  ATGAGTTGGAAATAAGTA-CTCTCTAGTACTTCAAAATAGGCTGTAGTGC  1098
      ||||||||||||| |||| | ||||||||| || ||||| ||||||  ||
seq2  ATGAGTTGGAAAT-AGTACCCCTCTAGTAC-TCCAAATA-GCTGTATGGC  1091

seq1  TGTAGCAGTGATGGGGTCGGATCT-AGAGACACACTGACTAGACTGATAG  1147
      |||||||  ||||||||| ||||| | |||||||||||||||||||||||
seq2  TGTAGCATGGATGGGGTCCGATCTCAAAGACACACTGACTAGACTGATAG  1141

seq1  AAGATGAGGCTAACCCTGGGGATAGTTACATGGGAAATTATTTCATAAGA  1197
      ||||| ||||||| ||||||| |||||   ||||||  | |||||| |||
seq2  AAGAT-AGGCTAA-CCTGGGG-TAGTT--CTGGGAA--TTTTTCAT-AGA  1183

seq1  AAAGGAGA  1205
      ||||||||
seq2  AAAGGAGA  1191

seq1: chr1_128108620_128109029
seq2: B6Ng01-080E17.g_68_477 (reverse)

seq1  CCTTCCCCCGCCCCACCCCCCCGCCCGGCTCCCCTACCCAGCCACTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCGCCCCACCCCCCCGCCCGGCTCCCCTACCCAGCCACTCCCA  50

seq1  CTTCTTGGCCCTGACATTCCCCTGTTGCTTTCTGCCAGGCTACTCTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGCCCTGACATTCCCCTGTTGCTTTCTGCCAGGCTACTCTATCA  100

seq1  CAGCAATAAAAAAAGTAACTGACAAATGGGGAATAGTTCCAGACAACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATAAAAAAAGTAACTGACAAATGGGGAATAGTTCCAGACAACCTT  150

seq1  GAGGATACCAAAATCCACAGGTCCTGACATCTCATCTCAATGACATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATACCAAAATCCACAGGTCCTGACATCTCATCTCAATGACATGAAA  200

seq1  TGCATATGTAGCCTACACATATCCTCTCAAAAGCTGTGCATATATATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTAGCCTACACATATCCTCTCAAAAGCTGTGCATATATATGGC  250

seq1  ACATGTGTGTTCCTGTGGATGTGTACATGTGTACATGCAGGTATGTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGTTCCTGTGGATGTGTACATGTGTACATGCAGGTATGTGTGC  300

seq1  ATGAGTATGTGCACATGTATGAGGGAGACAGACATCAATTTGTGGTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATGTGCACATGTATGAGGGAGACAGACATCAATTTGTGGTGTCT  350

seq1  TCTTTGATTGCTCCCCCACTTCATTTTTTGAGGCATGGTCTCTCACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATTGCTCCCCCACTTCATTTTTTGAGGCATGGTCTCTCACTAAA  400

seq1  TTGTGAATTC  410
      ||||||||||
seq2  TTGTGAATTC  410