BAC Information

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BAC

Clone NameB6Ng01-080G23
Chromosome1 (Build37)X (Build37)
Map Location 161,210,271 - 161,211,30768,580,156 - 68,580,241
singlet/doubletsingletsinglet
Overlap geneRfwd2
Upstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik, EG240853, LOC664972
Downstream geneEG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080G23.bB6Ng01-080G23.g
ACCDH895574DH895575
length1,045166
definitionDH895574|Mus musculus domesticus DNA, BAC clone: B6Ng01-080G23, 5' end.DH895575|Mus musculus domesticus DNA, BAC clone: B6Ng01-080G23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(161,210,271 - 161,211,307)(68,580,156 - 68,580,241)
sequence
gaattctttctaagaaatcatttgaaatactacataaagacaaaatacta
ggaccatagagaaggctcagcagttaggaacatttggtgctcttgcctct
tgaaatcagaggccctgatttcagttccagcactggtgactcacagctgc
ttgtccctccagtcgtagaagttctagtgcccttttctggccttaataga
tagtggtatatatactcttgcagacacatacaccataagaaaaataaatc
ttttaaaaagggggttgtattctagtaaattctggaacataaacatgtcc
agccatagtaaaataattaagaatgttatcctacagttaaagagtgaatt
gttatactgttcaaaaaatctaataggtgaattaaaaattttaaatgctt
gcatgtataacttttatatagtataggtatattatacttctaaattttta
taattatcaattggttttgctttataaattttgatagtttctgtataatg
agcaaaattaagaaattaccattaaaagccagaggaacttatattaattt
atacttagatttcagtagtcactttcttaatgtgtgtgcgcgtgtgcctg
cctgtctctgtctctctctctctctctctctctctctctctctctctctc
tctctctctctctctgtgtctgtgtctgtgtctgtgtctgtgtgtctgag
gctgttgtgaaattcactgttactgctcagtctggggccagattcagagc
agttctgacttcagcttcctaactgctaggattacaagcatgagccaccg
ttttctgataataatgaccctttctaggacaagaaacaaatctaaaaaaa
aatccaaacaaacaaacaaaaaactagctaaatggtccagaaccagcctc
aggatcactgttaaggtctgttgttgtatattctttcccttttcttgtcc
atttagcagtagggaatctttatgaaggtacatcttaattcttacacgac
tccatctctagtctcccttgtgggtacttcataggtgaactcctt
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_161210271_161211307
seq2: B6Ng01-080G23.b_49_1093

seq1  GAATTCTTTCTAAGAAATCATTTGAAATACTACATAAAGACAAAATACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAAGAAATCATTTGAAATACTACATAAAGACAAAATACTA  50

seq1  GGACCATAGAGAAGGCTCAGCAGTTAGGAACATTTGGTGCTCTTGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATAGAGAAGGCTCAGCAGTTAGGAACATTTGGTGCTCTTGCCTCT  100

seq1  TGAAATCAGAGGCCCTGATTTCAGTTCCAGCACTGGTGACTCACAGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAGAGGCCCTGATTTCAGTTCCAGCACTGGTGACTCACAGCTGC  150

seq1  TTGTCCCTCCAGTCGTAGAAGTTCTAGTGCCCTTTTCTGGCCTTAATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTCCAGTCGTAGAAGTTCTAGTGCCCTTTTCTGGCCTTAATAGA  200

seq1  TAGTGGTATATATACTCTTGCAGACACATACACCATAAGAAAAATAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTATATATACTCTTGCAGACACATACACCATAAGAAAAATAAATC  250

seq1  TTTTAAAAAGGGGGTTGTATTCTAGTAAATTCTGGAACATAAACATGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGGGGGTTGTATTCTAGTAAATTCTGGAACATAAACATGTCC  300

seq1  AGCCATAGTAAAATAATTAAGAATGTTATCCTACAGTTAAAGAGTGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGTAAAATAATTAAGAATGTTATCCTACAGTTAAAGAGTGAATT  350

seq1  GTTATACTGTTCAAAAAATCTAATAGGTGAATTAAAAATTTTAAATGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACTGTTCAAAAAATCTAATAGGTGAATTAAAAATTTTAAATGCTT  400

seq1  GCATGTATAACTTTTATATAGTATAGGTATATTATACTTCTAAATTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATAACTTTTATATAGTATAGGTATATTATACTTCTAAATTTTTA  450

seq1  TAATTATCAATTGGTTTTGCTTTATAAATTTTGATAGTTTCTGTATAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATCAATTGGTTTTGCTTTATAAATTTTGATAGTTTCTGTATAATG  500

seq1  AGCAAAATTAAGAAATTACCATTAAAAGCCAGAGGAACTTATATTAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATTAAGAAATTACCATTAAAAGCCAGAGGAACTTATATTAATTT  550

seq1  ATACTTAGATTTCAGTAGTCACTTTCTTAATGTGTGTGCGCGTGTGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGATTTCAGTAGTCACTTTCTTAATGTGTGTGCGCGTGTGCCTG  600

seq1  CCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  650

seq1  TCTCTCTCTCTCTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTGTCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTGTCTGAG  700

seq1  GCTGTTGTGAAATTCACTGTTACTGCTCAGTCTGGGGCCAGATTCAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTGAAATTCACTGTTACTGCTCAGTCTGGGGCCAGATTCAGAGC  750

seq1  AGTTCTGACTTCAGCTTCCTAACTGCTAGGATTACAAGCATGAGCCACCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGACTTCAGCTTCCTAACTGCTAGGATTACAAGCATGAGCCACCG  800

seq1  -TTTCTGATAATAATGA-CCTTTCTAGGACAAGAAAACAAAACTAAAAAA  848
       |||||||||||||||| ||||||||||||||| ||||||| || |||||
seq2  TTTTCTGATAATAATGACCCTTTCTAGGACAAG-AAACAAATCT-AAAAA  848

seq1  AAAATCCAAACAAACAAACAAAAAACTAGCT-AATGGTCCAGAACCAG-C  896
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  AAAATCCAAACAAACAAACAAAAAACTAGCTAAATGGTCCAGAACCAGCC  898

seq1  TCAGGATCACTGTTAA-GTCTGTTGTTGTATA-TCTTTCCCTTTTCTTGT  944
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  TCAGGATCACTGTTAAGGTCTGTTGTTGTATATTCTTTCCCTTTTCTTGT  948

seq1  -CAATTAGCAGTTAGGTATCTTTAT-AAGGTACATCTTAATTCTCACAGG  992
       || ||||||||  || |||||||| |||||||||||||||||| ||| |
seq2  CCATTTAGCAGTAGGGAATCTTTATGAAGGTACATCTTAATTCTTACACG  998

seq1  ACTCCATCTCTAG-CTCCCTTGT-GGTTCTTCATTGTTGTACTCCTT  1037
      ||||||||||||| ||||||||| ||| |||||| | || |||||||
seq2  ACTCCATCTCTAGTCTCCCTTGTGGGTACTTCATAGGTGAACTCCTT  1045

seq1: chrX_68580156_68580241
seq2: B6Ng01-080G23.g_69_147 (reverse)

seq1  ATATATATAAAGAACTCAAGAAGCTGGACTCCAGAAAATCAAATAACCCC  50
      ||||||||      ||||||||| ||||||||||||||||||||||||||
seq2  ATATATAT------CTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCC  44

seq1  ATTAAAAAATGGAGCTCAGAGCTAAACAAAGAATTC  86
      ||| |||||||| |||||||||||||||||||||||
seq2  ATT-AAAAATGGGGCTCAGAGCTAAACAAAGAATTC  79