BAC Information

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BAC

Clone NameB6Ng01-080H02
Chromosome1 (Build37)
Map Location 177,084,998 - 177,185,777
singlet/doubletdoublet
Overlap geneRgs7
Upstream geneOlfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080H02.bB6Ng01-080H02.g
ACCDH895580DH895581
length1,2201,187
definitionDH895580|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H02, 5' end.DH895581|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,184,549 - 177,185,777)(177,084,998 - 177,086,190)
sequence
gaattctcctcttctgaaggagagtgagaaggttttctttaatatttgat
tcctttccaccttctcttgaagacagccttcaaatggacaaacctcactg
aagtcattctgccctgaaagcaattaagatcaaataccacaaggctaaaa
ataccgatgttacactttcagcagcaattcttggctgttttgctccactt
tatggtcaggtggtcttttagcaagagatggatgctaacggttgccaggg
actggtgtggtggggagaacagtaaataattcaaaaatagctgctctcaa
gtgctaagcaatttggcttgtctcagaacttaaagaatttttattttgtc
tgaagctgacgataaaggctgtattatcttaaatggattttatctgtggg
gtttgctggattacaagccctcctacttacatgacatggttttgggggag
tttctttggtaataatctcactccagcttcattctgtgcatttctgtgag
atacactagtcctctggatgaaggatggggagagagagagagaccatgct
tagtacatcaggtcctcgtgcctcttattttatctatatgatgaacagaa
ggatttttctttgtggtttggtcatctggtgtgtgtaaacacgaagatga
aatctgtctgaaagcaaagctgatgcagaagagtacagagtgcagagccg
tggaagagagtgaaactctgccctagctttaagcaccatctgtgccaaag
tttttggcaacaagacaaaagaattcccacccttttccctcacagcctag
cttgggcccctgaaagctaagttttgagctacttaacctttttatgcagc
ctttcttcctcagttcccagtgataaaaagttatttgcactaacaacaac
tgtgggttttttgttgtgtgtgttttttaaatgatttgaaacaattttaa
agtttatatcctggtgtttttttctctcatagtaagaaaacactattttt
cctcttaggaaaccaccattttttatcctttgagaagagtttttggatat
cctaggttttttgtatttcagatgatttgccaaattgctccttctaatcg
gtgagaaactgagttgaaattttgatgggagattgcatggaatctgtaat
tgcttaggccagatagcccattccaggtgatctgccaatcatggactagg
agatctttccactcctgaga
gaattctattgatgggaatcccctctaagagattatgaactagttcttcc
tcggtggtatgtacaacccaggtcaaggtaaagtcaaatctttaacttta
aatagactgaccttccaatgagtcttataaaataacttctaggtctttag
tcaaatgctaggaaagtctgagactataaacatcattttcaccatgaagc
cattacataataaatggatgaaaaatccagggaaacaaactttgtgtctg
acttaggacttgggaaaatgaatctacgtaaccaatattgtgtgataggt
aaacaaaaactccaaatatacaacacatcccaaatatgagaaacactgct
acatggtaaagtccaaaatggttttcgttgtgattatgaaaggtttgttc
agagaatctaagtcaatattaatgctcatgttgtcttttcaaaatacttc
ttcgaggatctgatatgagatgttgtgtagtggagaaaagcttatgttga
tattacatgcatagatgctactaagagatcttagtgttagaaggcatggt
ctcaagatttatttctttacttaatggtaatcacagagctacatgcttcc
atgatgcaactgctcctaaaattctatcatcacctcaacttaacaagatc
ctgggagagcagtggcaatgtgtaagtggagtattagaaaagtttaataa
gtgttcagtcaagattgccctcccaacaatggcacagcagatggcttagc
atcctccagctgctcagcaaactaatcactaattaatcttcatgtatgag
tgatatttgcctcccccacacagctcaagtgcaagaacacaccaacccaa
aacattgtagttttttttttttcacccatttggataatccaagtgatgtg
tgcactgaagaaagacatccccagattgtccaccatggtgaagagctggg
tagcagcctgttgccaaactctcagggttactcagcccttctttcaccct
caaacttcggaggtgataattaggtggcatatataaaggcgagaattcta
ccaactaatttgttttcattttgcttagtactcaatatagaaaggtgact
attttaaatctttgattcgggtgagagcctataatttatagccctattca
aatcagttatccagactccaccgaagcctccggagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_177184549_177185777
seq2: B6Ng01-080H02.b_46_1265 (reverse)

seq1  TCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACA  50
      |||||| || ||||||||||||| | |  ||| |||||||| ||||| | 
seq2  TCTCAGGAG-TGGAAAGATCTCCTA-GTCCAT-GATTGGCA-GATCACC-  45

seq1  TTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATC  100
         |  ||  |||||||| |||  ||||||| ||||||||| ||||||||
seq2  ---TGGAATGGGCTATCTGGCC-TAAGCAAT-TACAGATTCCATGCAATC  90

seq1  T-CCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTT  149
      | ||||||||||| ||||||| ||  ||| || |||||||||||||||||
seq2  TCCCATCAAAATTTCAACTCAGTTTCTCACCG-ATTAGAAGGAGCAATTT  139

seq1  GCAAATTCATCTGGAATAACAAAAAACCTAGGATAT-CAAAAACTCTTCT  198
      |  || ||||||| ||| |||||||||||||||||| |||||||||||||
seq2  GGCAAATCATCTGAAAT-ACAAAAAACCTAGGATATCCAAAAACTCTTCT  188

seq1  C-AAGGATAAAAAAATGGTG--TTTCTAAGAGGAAAAATAGTGTTTTCTT  245
      | |||||| |||||||||||  || |||||||||||||||||||||||||
seq2  CAAAGGAT-AAAAAATGGTGGTTTCCTAAGAGGAAAAATAGTGTTTTCTT  237

seq1  ACTATGAGAG-AAAAAACACCAGGATATAAAACTTTAAAATTGTTTCAAA  294
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  ACTATGAGAGAAAAAAACACCAGGATAT-AAACTTTAAAATTGTTTCAAA  286

seq1  TCATTTAAAAAAACACACACAACAAAAAACCCACAGTTGTTGTTAGTTGC  344
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  TCATTT-AAAAAACACACACAACAAAAAACCCACAGTTGTTGTTAG-TGC  334

seq1  AAATAAC-TTTTATCACTGGGAACTGAGGAAGAAAGGCTGCATAAAAAGG  393
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTTTTATCACTGGGAACTGAGGAAGAAAGGCTGCATAAAAAGG  384

seq1  TTAAGTAGCTCAAAACTTAGCTTTCAGGGGCCCAAGCTAGGCTGTGAGGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAGCTCAAAACTTAGCTTTCAGGGGCCCAAGCTAGGCTGTGAGGG  434

seq1  AAAAGGGTGGGAATTCTTTTGTCTTGTTGCCAAAAACTTTGGCACAGATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTGGGAATTCTTTTGTCTTGTTGCCAAAAACTTTGGCACAGATG  484

seq1  GTGCTTAAAGCTAGGGCAGAGTTTCACTCTCTTCCACGGCTCTGCACTCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAAAGCTAGGGCAGAGTTTCACTCTCTTCCACGGCTCTGCACTCT  534

seq1  GTACTCTTCTGCATCAGCTTTGCTTTCAGACAGATTTCATCTTCGTGTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTTCTGCATCAGCTTTGCTTTCAGACAGATTTCATCTTCGTGTTT  584

seq1  ACACACACCAGATGACCAAACCACAAAGAAAAATCCTTCTGTTCATCATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCAGATGACCAAACCACAAAGAAAAATCCTTCTGTTCATCATA  634

seq1  TAGATAAAATAAGAGGCACGAGGACCTGATGTACTAAGCATGGTCTCTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAAATAAGAGGCACGAGGACCTGATGTACTAAGCATGGTCTCTCT  684

seq1  CTCTCTCCCCATCCTTCATCCAGAGGACTAGTGTATCTCACAGAAATGCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCCATCCTTCATCCAGAGGACTAGTGTATCTCACAGAAATGCA  734

seq1  CAGAATGAAGCTGGAGTGAGATTATTACCAAAGAAACTCCCCCAAAACCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAAGCTGGAGTGAGATTATTACCAAAGAAACTCCCCCAAAACCA  784

seq1  TGTCATGTAAGTAGGAGGGCTTGTAATCCAGCAAACCCCACAGATAAAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTAAGTAGGAGGGCTTGTAATCCAGCAAACCCCACAGATAAAAT  834

seq1  CCATTTAAGATAATACAGCCTTTATCGTCAGCTTCAGACAAAATAAAAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAGATAATACAGCCTTTATCGTCAGCTTCAGACAAAATAAAAAT  884

seq1  TCTTTAAGTTCTGAGACAAGCCAAATTGCTTAGCACTTGAGAGCAGCTAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGTTCTGAGACAAGCCAAATTGCTTAGCACTTGAGAGCAGCTAT  934

seq1  TTTTGAATTATTTACTGTTCTCCCCACCACACCAGTCCCTGGCAACCGTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTATTTACTGTTCTCCCCACCACACCAGTCCCTGGCAACCGTT  984

seq1  AGCATCCATCTCTTGCTAAAAGACCACCTGACCATAAAGTGGAGCAAAAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCATCTCTTGCTAAAAGACCACCTGACCATAAAGTGGAGCAAAAC  1034

seq1  AGCCAAGAATTGCTGCTGAAAGTGTAACATCGGTATTTTTAGCCTTGTGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAATTGCTGCTGAAAGTGTAACATCGGTATTTTTAGCCTTGTGG  1084

seq1  TATTTGATCTTAATTGCTTTCAGGGCAGAATGACTTCAGTGAGGTTTGTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATCTTAATTGCTTTCAGGGCAGAATGACTTCAGTGAGGTTTGTC  1134

seq1  CATTTGAAGGCTGTCTTCAAGAGAAGGTGGAAAGGAATCAAATATTAAAG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAGGCTGTCTTCAAGAGAAGGTGGAAAGGAATCAAATATTAAAG  1184

seq1  AAAACCTTCTCACTCTCCTTCAGAAGAGGAGAATTC  1229
      ||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTCTCACTCTCCTTCAGAAGAGGAGAATTC  1220

seq1: chr1_177084998_177086190
seq2: B6Ng01-080H02.g_66_1252

seq1  GAATTCTATTGATGGGAATCCCCTCTAAGAGATTATGAACTAGTTCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGATGGGAATCCCCTCTAAGAGATTATGAACTAGTTCTTCC  50

seq1  TCGGTGGTATGTACAACCCAGGTCAAGGTAAAGTCAAATCTTTAACTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGGTATGTACAACCCAGGTCAAGGTAAAGTCAAATCTTTAACTTTA  100

seq1  AATAGACTGACCTTCCAATGAGTCTTATAAAATAACTTCTAGGTCTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTGACCTTCCAATGAGTCTTATAAAATAACTTCTAGGTCTTTAG  150

seq1  TCAAATGCTAGGAAAGTCTGAGACTATAAACATCATTTTCACCATGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCTAGGAAAGTCTGAGACTATAAACATCATTTTCACCATGAAGC  200

seq1  CATTACATAATAAATGGATGAAAAATCCAGGGAAACAAACTTTGTGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATAATAAATGGATGAAAAATCCAGGGAAACAAACTTTGTGTCTG  250

seq1  ACTTAGGACTTGGGAAAATGAATCTACGTAACCAATATTGTGTGATAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGACTTGGGAAAATGAATCTACGTAACCAATATTGTGTGATAGGT  300

seq1  AAACAAAAACTCCAAATATACAACACATCCCAAATATGAGAAACACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACTCCAAATATACAACACATCCCAAATATGAGAAACACTGCT  350

seq1  ACATGGTAAAGTCCAAAATGGTTTTCGTTGTGATTATGAAAGGTTTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAAAGTCCAAAATGGTTTTCGTTGTGATTATGAAAGGTTTGTTC  400

seq1  AGAGAATCTAAGTCAATATTAATGCTCATGTTGTCTTTTCAAAATACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATCTAAGTCAATATTAATGCTCATGTTGTCTTTTCAAAATACTTC  450

seq1  TTCGAGGATCTGATATGAGATGTTGTGTAGTGGAGAAAAGCTTATGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGATCTGATATGAGATGTTGTGTAGTGGAGAAAAGCTTATGTTGA  500

seq1  TATTACATGCATAGATGCTACTAAGAGATCTTAGTGTTAGAAGGCATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATGCATAGATGCTACTAAGAGATCTTAGTGTTAGAAGGCATGGT  550

seq1  CTCAAGATTTATTTCTTTACTTAATGGTAATCACAGAGCTACATGCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATTTATTTCTTTACTTAATGGTAATCACAGAGCTACATGCTTCC  600

seq1  ATGATGCAACTGCTCCTAAAATTCTATCATCACCTCAACTTAACAAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCAACTGCTCCTAAAATTCTATCATCACCTCAACTTAACAAGATC  650

seq1  CTGGGAGAGCAGTGGCAATGTGTAAGTGGAGTATTAGAAAAGTTTAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAGCAGTGGCAATGTGTAAGTGGAGTATTAGAAAAGTTTAATAA  700

seq1  GTGTTCAGTCAAGATTGCCCTCCCAACAATGGCACAGCAGATGGCTTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGTCAAGATTGCCCTCCCAACAATGGCACAGCAGATGGCTTAGC  750

seq1  ATCCTCCAGCTGCTCAGCAAACTAATCACTAATTAATCTTCATGTATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCAGCTGCTCAGCAAACTAATCACTAATTAATCTTCATGTATGAG  800

seq1  TGATATTTGCCTCCCCCACACAGCTCAAGTGCAAGAACACACCAA-CCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGATATTTGCCTCCCCCACACAGCTCAAGTGCAAGAACACACCAACCCAA  850

seq1  AACATTGTAGTTTTTTTTTTTTCACCCATTTGGAT-ATCCAAGTGATGTG  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACATTGTAGTTTTTTTTTTTTCACCCATTTGGATAATCCAAGTGATGTG  900

seq1  TGCACTG-AGAAAGACATCCCCAGATTGT-CACCAT-GTGAAGAGCT-GG  944
      ||||||| ||||||||||||||||||||| |||||| |||||||||| ||
seq2  TGCACTGAAGAAAGACATCCCCAGATTGTCCACCATGGTGAAGAGCTGGG  950

seq1  TAGCAG-CTG-TGCCAAA--CTCAGG--TACTCAGCCC-TCTCTCA-CCT  986
      |||||| ||| |||||||  ||||||  |||||||||| ||| ||| |||
seq2  TAGCAGCCTGTTGCCAAACTCTCAGGGTTACTCAGCCCTTCTTTCACCCT  1000

seq1  CAAAC-TCGGAGGTGATAATTA-GTGGCATATATAAAAGCAGAGAATTCT  1034
      ||||| |||||||||||||||| |||||||||||||| || |||||||||
seq2  CAAACTTCGGAGGTGATAATTAGGTGGCATATATAAAGGC-GAGAATTCT  1049

seq1  AACAACTAATTTGTTTTCATTTTTGCTACAGTACTTCAAATATTAAAAGG  1084
      | ||||||||||||||||| |||||||  ||||||   |||||  |||||
seq2  ACCAACTAATTTGTTTTCA-TTTTGCT-TAGTACT--CAATATAGAAAGG  1095

seq1  TGGACTAATTTTATAATCTTTTAATTCTGTGTGAAGAG-CTATATATTTA  1133
      | |||| |||||| |||| ||| |||| | ||| |||| ||||| |||||
seq2  T-GACT-ATTTTA-AATC-TTTGATTC-GGGTG-AGAGCCTATA-ATTTA  1138

seq1  TAGCCCCAATTTCAAAATCAAGTATTATCCAAAGACTCAACACTGAAGCC  1183
      |||||| |  ||| ||||||    ||||||  ||||||  ||| ||||||
seq2  TAGCCCTA--TTC-AAATCA---GTTATCC--AGACTC--CACCGAAGCC  1178

seq1  TCCCAGAGAC  1193
      | || |||||
seq2  T-CCGGAGAC  1187