BAC Information

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BAC

Clone NameB6Ng01-080H10
Chromosome1 (Build37)4 (Build37)
Map Location 61,720,721 - 61,721,25279,827,227 - 79,828,340
singlet/doubletsingletsinglet
Overlap genePard3b
Upstream geneEif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080H10.bB6Ng01-080H10.g
ACCDH895595DH895596
length9971,087
definitionDH895595|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H10, 5' end.DH895596|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,720,721 - 61,721,252)(79,827,227 - 79,828,340)
sequence
gaattcctgatctttacaagacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatttaacgagatgatcatgtggcttttgtcttt
gagtttgtttatataatggattacattgatggattttcatattaatccat
ccctgcatccctggaataaaacctacttggtcaggatggatgattgcttt
aatgtgttcttggattcggttagcgagaattttattgagtatttttgcat
cgataatcataagggaaattggtctgaagttctctatctttgttggatct
ttctgtggtttaggtatcaaagtaattgtggcttcataaaatgagttggg
tagagtaccttctacttctattttgtgaaatagtttgtgcagaactggaa
ttagatcttctttgaaggtctgatagaactctgcactaaatccgtctggt
cctggcctttttttggctaggaaactattaataactgcctctatttcttt
aggggatatgggactgtttagatggttaacttgatcctgatttaactttg
gtacctggtatctgtccagaaatttgtccatttcgtccaggttttccagt
tttgttgagtataggcttttgtagaaggatctgttggtgttttggatttc
ttcaggatctgttgttatgtctcccttttcagttctgattttgttaatta
ggattttgtccctgtgccctctagtgagtctagctaagggtttatctatc
ttgctgattttctcaaagaacaaactcatcgtttggttaattctttgaat
agttcttcttgtttccacttggttgatttcacccttgagattgattattt
cctgccatctactcctcttgggtgagtttgtttctatttttctagagttt
tagatgtgttgtcaagatgctagggtgtgctctctccagtttgttttgga
ggcactcagagctttgagcttcctcttagaatgctttcattgtgtcc
gaattcaaggcattaaaaacgctgaggtagcaagatacctcagatggcaa
agtgcttgtcttaaaagttggcagacatggttttgatcctcagaacccat
gtaaagaaaatctgggtgtgatgccacaagtttataattgcagcatgggg
gagatgaagacaagaaaacgcaggggaccattgttagaccagttccattt
acgtgggaagctccaagtaaatgaataaattctgtttaaattaataataa
tgatgataataataataacaaacataaaagtagatagaatctgaggaatg
atacctaattttttttacccactatatattaccaatacctgaacactcac
acatcactacatcactacttctctcacctcttcatataaaaatacagact
aacccaagattacattataggtagcagagtagaatctgggatatcttctg
tctgtggtttgaggagtttatcgtgtttcttgtagacaatgtattggatc
aagtactctattgtacagtttttaccaacttcttagctactcatctttat
ttggtatgtttctattttggggttgttatggtagaatgtctagaaacatt
ggtggatatgtgtttttgtgtccataaattaagtgcacgggactgcaaca
ctatggagtgtcaaatccacacttaatttcattaaaagcagtgaaacagc
tctctgacatgtctatatatgaatatttaactgcatcagaggttattatt
caaaaataatatttatttactaaggaatatattatagttatttgtgctta
agatagaagtgtttaaccaatatgtactttatcatgaaaaataccctcta
agtctattatttactaatttcatgtatttggttaaatattcttaaatgtt
tttgagctaacttgatcttgatatgttctagtaaaaaaaatcagcagcac
ttaatatacattatcaagagctaacaatgctgtgattgtttgattctgca
actttgttgtgttccaggagatatggctttatttcttcttctgtgggttc
caatctcaagacaatattgaaaatatcacatgtactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61720721_61721252
seq2: B6Ng01-080H10.b_47_576 (reverse)

seq1  GTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTAT  50
      ||| |||||||||||||||||||||| |||||||||||||| ||||||||
seq2  GTTAACCATCTAAACAGTCCCATATCCCCTAAAGAAATAGAGGCAGTTAT  50

seq1  TAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAG  100
      ||||||| ||| | |||||||||| ||||||||||| || ||||||||||
seq2  TAATAGTTTCCTAGCCAAAAAAAGGCCAGGACCAGACGGATTTAGTGCAG  100

seq1  AGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTA  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTA  150

seq1  TTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGC  200

seq1  CACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGA  250
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACAATTACTTTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGA  250

seq1  ACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAA  300
      |||||||||||||||| ||||||| ||||||||||||||| |||||||||
seq2  ACTTCAGACCAATTTCCCTTATGATTATCGATGCAAAAATACTCAATAAA  300

seq1  ATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGA  350

seq1  CCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAAT  400
      |||||||||||||||||||||||||||||||||| |||||||  ||||||
seq2  CCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGATTAATAT--GAAAAT  398

seq1  CCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATG  450
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAGCCACATG  448

seq1  ATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATT  500
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCGTTAAATGCAGAAAAAGCATTTGACAAGATCCAACACCCATT  498

seq1  CATGATAAAAGTTTTGGAAAGATCAGGAATTC  532
      |||||||||||| ||| |||||||||||||||
seq2  CATGATAAAAGTCTTGTAAAGATCAGGAATTC  530

seq1: chr4_79827227_79828340
seq2: B6Ng01-080H10.g_70_1156 (reverse)

seq1  AAGTACTATGTGTGATATTTGTCAATATTGTCTTTTGAGAATGTGGAACC  50
      ||||||    |||||||||| |||||||||||  ||||||   |||||||
seq2  AAGTAC---ATGTGATATTT-TCAATATTGTC--TTGAGA--TTGGAACC  42

seq1  CACAGAAAGAAAGAAATTAAAGCCATATCTCCTGGAAACACACCAAAAGT  100
      |||||||   |||||| |||||||||||||||||| |||||| ||||   
seq2  CACAGAA--GAAGAAA-TAAAGCCATATCTCCTGG-AACACAACAAA--G  86

seq1  TTGCAGATTCAAAACAAATCACAGCATGTGTTTAGCTTCTTTGATAATGT  150
      ||||||| |||||   ||||||||||| || ||||||   ||||||||||
seq2  TTGCAGAATCAAA--CAATCACAGCAT-TG-TTAGCT--CTTGATAATGT  130

seq1  ATTATTAAAGTGCTGCTGATTTTTTTTTACTTAGAACATATCAAGATCAA  200
      | |||| |||||||||||| |||||||||| |||||||||||||||||||
seq2  A-TATT-AAGTGCTGCTGA-TTTTTTTTAC-TAGAACATATCAAGATCAA  176

seq1  GTTAGCCTCAAAAACATTTAAAGAATATTTAACCAAATTACATGAAATTA  250
      ||||| ||||||||||||| ||||||||||||||||| ||||||||||||
seq2  GTTAG-CTCAAAAACATTT-AAGAATATTTAACCAAA-TACATGAAATTA  223

seq1  GTAAATAATAGACTTAGAGGGTATTTTTTCATTGAT-AAGTACATATTGG  299
      ||||||||||||||||||||||| ||||||| |||| |||||||||||||
seq2  GTAAATAATAGACTTAGAGGGTA-TTTTTCA-TGATAAAGTACATATTGG  271

seq1  TTAAACACTTCTATCTTAAGCAC-AATAACTATAATATATTCCTTAGTAA  348
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAAACACTTCTATCTTAAGCACAAATAACTATAATATATTCCTTAGTAA  321

seq1  ATAAATATTATTTTTGAATAATAACCTCTGATGCAGTTAAATATTCATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATTATTTTTGAATAATAACCTCTGATGCAGTTAAATATTCATAT  371

seq1  ATAGACATGTCAGAGAGCTGTTTCACTGCTTTTAATGAAATTAAGTGTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATGTCAGAGAGCTGTTTCACTGCTTTTAATGAAATTAAGTGTGG  421

seq1  ATTTGACACTCCATAGTGTTGCAGTCCCGTGCACTTAATTTATGGACACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACACTCCATAGTGTTGCAGTCCCGTGCACTTAATTTATGGACACA  471

seq1  AAAACACATATCCACCAATGTTTCTAGACATTCTACCATAACAACCCCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACATATCCACCAATGTTTCTAGACATTCTACCATAACAACCCCAA  521

seq1  AATAGAAACATACCAAATAAAGATGAGTAGCTAAGAAGTTGGTAAAAACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACATACCAAATAAAGATGAGTAGCTAAGAAGTTGGTAAAAACT  571

seq1  GTACAATAGAGTACTTGATCCAATACATTGTCTACAAGAAACACGATAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATAGAGTACTTGATCCAATACATTGTCTACAAGAAACACGATAAA  621

seq1  CTCCTCAAACCACAGACAGAAGATATCCCAGATTCTACTCTGCTACCTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAAACCACAGACAGAAGATATCCCAGATTCTACTCTGCTACCTAT  671

seq1  AATGTAATCTTGGGTTAGTCTGTATTTTTATATGAAGAGGTGAGAGAAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATCTTGGGTTAGTCTGTATTTTTATATGAAGAGGTGAGAGAAGT  721

seq1  AGTGATGTAGTGATGTGTGAGTGTTCAGGTATTGGTAATATATAGTGGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTAGTGATGTGTGAGTGTTCAGGTATTGGTAATATATAGTGGGT  771

seq1  AAAAAAAATTAGGTATCATTCCTCAGATTCTATCTACTTTTATGTTTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATTAGGTATCATTCCTCAGATTCTATCTACTTTTATGTTTGTT  821

seq1  ATTATTATTATCATCATTATTATTAATTTAAACAGAATTTATTCATTTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATCATCATTATTATTAATTTAAACAGAATTTATTCATTTAC  871

seq1  TTGGAGCTTCCCACGTAAATGGAACTGGTCTAACAATGGTCCCCTGCGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTTCCCACGTAAATGGAACTGGTCTAACAATGGTCCCCTGCGTT  921

seq1  TTCTTGTCTTCATCTCCCCCATGCTGCAATTATAAACTTGTGGCATCACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCTTCATCTCCCCCATGCTGCAATTATAAACTTGTGGCATCACA  971

seq1  CCCAGATTTTCTTTACATGGGTTCTGAGGATCAAAACCATGTCTGCCAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTTTCTTTACATGGGTTCTGAGGATCAAAACCATGTCTGCCAAC  1021

seq1  TTTTAAGACAAGCACTTTGCCATCTGAGGTATCTTGCTACCTCAGCGTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGACAAGCACTTTGCCATCTGAGGTATCTTGCTACCTCAGCGTTT  1071

seq1  TTAATGCCTTGAATTC  1114
      ||||||||||||||||
seq2  TTAATGCCTTGAATTC  1087