BAC Information

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BAC

Clone NameB6Ng01-080I18
Chromosome1 (Build37)
Map Location 135,738,625 - 135,867,873
singlet/doubletdoublet
Overlap geneOptc, Prelp, LOC100042352
Upstream geneLrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4
Downstream geneLOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080I18.bB6Ng01-080I18.g
ACCDH895656DH895657
length1,201317
definitionDH895656|Mus musculus domesticus DNA, BAC clone: B6Ng01-080I18, 5' end.DH895657|Mus musculus domesticus DNA, BAC clone: B6Ng01-080I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,866,669 - 135,867,873)(135,738,625 - 135,738,941)
sequence
gaattctacctgaagggccaagagaggaaccagggagcatcccaagtatt
caaggaagacagagcaggcatggggagggcaaggcctgcagcccctgaac
agctcactggcatggctggacttagtgcatcctctctctgccttccgtat
atatttatatttatttattgagcatcttttcagtgccaggtaacctacaa
aggagtgggaacaaatgtgaatctgacttgctctgacttgaaggagctca
taggttagtggaagatgaattttcggtagtccttgttctgtgatttagtt
ctttcaaagctaaatactccaatcccagccttgtgactgagtgctctccc
acccccatcccatgacatcaggcctaagagcagcctgaataaagtctcac
ccaggcctcctcagcctggcgtctgctctagctccctgcctgaagatagt
cagtgtttttctccatctgttctggaagctgtggggctttccttcctaag
cctggagacgacccagatgacctcgtccattgcatgtatctgcaggagaa
cgaggctctgaggaagtccgtgaactcacccttccccgtccctggtcctc
ttaggaaggatgctcttgtgcttccagggagaggatgagatagttctgtg
tgcctcaccctcgccaccctgcaggaaactaggtctggaaaaaccgtagg
ggcagactcagaagtttgggcagttaatggaaagcccacaatagagtcat
cacaaaacacccctaagtagattaacaaccttggtagaacttgaggactg
acattgcctcttaagttccaacaacctttaccaaatccagagatccagtg
aagagttcccacgaagaagtctcatttgtctctgtaaagggctcatggcc
atgtttctgggacagagtgagctatcttccatggagtagtgcagaagacc
cacagagctcgggagtcggagaggtgcttgctgtcctctaggagtctgga
catgggtgtggacaggcatgtgcatctttttttgctatatccattttttt
tcaatttaatagcagaaggttcatttcccatgtttatgacttcccagaca
gaattcttgttcttcacagtactggccattggtgttgaagcagacttaag
tccatcagaaaacagttggtttatcccgaacccctaacatctggcatgac
a
atccctagggtgatttgctttgctggctcccctggatggagtgcagcagc
aggtgggctgttgggtgacacccatgctctagtagctgagcaggctcaga
tgggagaaggatgcaggcttgcggatcatgctgtgcttggaatgggcagg
gtggggcttttcccattttgtttctcattttctttactcagtaggtaggg
ctgtgtgtatatgtgtgctggagagagagtatttagggattggcatgagt
atctgcatgtacaagcgcgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135866669_135867873
seq2: B6Ng01-080I18.b_40_1240 (reverse)

seq1  TGTCATGGCACAGATGTTAGGGGGTGTCGGGGATAACCAACTGTTTTCTG  50
      |||||||   |||||||||||||   |||||   ||||||||||||||||
seq2  TGTCATG--CCAGATGTTAGGGG--TTCGGGATAAACCAACTGTTTTCTG  46

seq1  ATTGGACTTAAGGTCTGCTTC-ACAC--ATGCCCAGTACTGTGAAG-ACA  96
      | ||||||||| ||||||||| ||||  ||| |||||||||||||| |||
seq2  A-TGGACTTAA-GTCTGCTTCAACACCAATGGCCAGTACTGTGAAGAACA  94

seq1  AGAACTCTTGTCTGGGAAGGTCATATACATGGGAAATGAACCTTCTGCTA  146
      |||| || |||||||||| |||||| ||||||||||||||||||||||||
seq2  AGAATTC-TGTCTGGGAA-GTCATAAACATGGGAAATGAACCTTCTGCTA  142

seq1  TTAAATTGAAAAAAAATGGATATAGCATATAAAGATGCACATGCCTGTCC  196
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  TTAAATTGAAAAAAAATGGATATAGCAAAAAAAGATGCACATGCCTGTCC  192

seq1  ACACCCATGTCCAGACTCCTAGAGGACAGCAAGCACCTCTCCGACTCCCG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATGTCCAGACTCCTAGAGGACAGCAAGCACCTCTCCGACTCCCG  242

seq1  AGCTCTGTGGGTCTTCTGCACTACTCCATGGAAGATAGCTCACTCTGTCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTGGGTCTTCTGCACTACTCCATGGAAGATAGCTCACTCTGTCC  292

seq1  CAGAAACATGGCCATGAGCCCCTTACAGAGACAAATGAGACTTCTTCGTG  346
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGAAACATGGCCATGAGCCCTTTACAGAGACAAATGAGACTTCTTCGTG  342

seq1  GGAACTCTTCACTGGATCTCTGGATTTGGTAAAGGTTGTTGGAACTTAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTTCACTGGATCTCTGGATTTGGTAAAGGTTGTTGGAACTTAAG  392

seq1  AGGCAATGTCAGTCCTCAAGTTCTACCAAGGTTGTTAATCTACTTAGGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGTCAGTCCTCAAGTTCTACCAAGGTTGTTAATCTACTTAGGGG  442

seq1  TGTTTTGTGATGACTCTATTGTGGGCTTTCCATTAACTGCCCAAACTTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGATGACTCTATTGTGGGCTTTCCATTAACTGCCCAAACTTCT  492

seq1  GAGTCTGCCCCTACGGTTTTTCCAGACCTAGTTTCCTGCAGGGTGGCGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGCCCCTACGGTTTTTCCAGACCTAGTTTCCTGCAGGGTGGCGAG  542

seq1  GGTGAGGCACACAGAACTATCTCATCCTCTCCCTGGAAGCACAAGAGCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGCACACAGAACTATCTCATCCTCTCCCTGGAAGCACAAGAGCAT  592

seq1  CCTTCCTAAGAGGACCAGGGACGGGGAAGGGTGAGTTCACGGACTTCCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTAAGAGGACCAGGGACGGGGAAGGGTGAGTTCACGGACTTCCTC  642

seq1  AGAGCCTCGTTCTCCTGCAGATACATGCAATGGACGAGGTCATCTGGGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCGTTCTCCTGCAGATACATGCAATGGACGAGGTCATCTGGGTC  692

seq1  GTCTCCAGGCTTAGGAAGGAAAGCCCCACAGCTTCCAGAACAGATGGAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGGCTTAGGAAGGAAAGCCCCACAGCTTCCAGAACAGATGGAGA  742

seq1  AAAACACTGACTATCTTCAGGCAGGGAGCTAGAGCAGACGCCAGGCTGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTGACTATCTTCAGGCAGGGAGCTAGAGCAGACGCCAGGCTGAG  792

seq1  GAGGCCTGGGTGAGACTTTATTCAGGCTGCTCTTAGGCCTGATGTCATGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTGGGTGAGACTTTATTCAGGCTGCTCTTAGGCCTGATGTCATGG  842

seq1  GATGGGGGTGGGAGAGCACTCAGTCACAAGGCTGGGATTGGAGTATTTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGGTGGGAGAGCACTCAGTCACAAGGCTGGGATTGGAGTATTTAG  892

seq1  CTTTGAAAGAACTAAATCACAGAACAAGGACTACCGAAAATTCATCTTCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAGAACTAAATCACAGAACAAGGACTACCGAAAATTCATCTTCC  942

seq1  ACTAACCTATGAGCTCCTTCAAGTCAGAGCAAGTCAGATTCACATTTGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCTATGAGCTCCTTCAAGTCAGAGCAAGTCAGATTCACATTTGTT  992

seq1  CCCACTCCTTTGTAGGTTACCTGGCACTGAAAAGATGCTCAATAAATAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCTTTGTAGGTTACCTGGCACTGAAAAGATGCTCAATAAATAAA  1042

seq1  TATAAATATATACGGAAGGCAGAGAGAGGATGCACTAAGTCCAGCCATGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATATACGGAAGGCAGAGAGAGGATGCACTAAGTCCAGCCATGC  1092

seq1  CAGTGAGCTGTTCAGGGGCTGCAGGCCTTGCCCTCCCCATGCCTGCTCTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCTGTTCAGGGGCTGCAGGCCTTGCCCTCCCCATGCCTGCTCTG  1142

seq1  TCTTCCTTGAATACTTGGGATGCTCCCTGGTTCCTCTCTTGGCCCTTCAG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTGAATACTTGGGATGCTCCCTGGTTCCTCTCTTGGCCCTTCAG  1192

seq1  GTAGAATTC  1205
      |||||||||
seq2  GTAGAATTC  1201

seq1: chr1_135738625_135738941
seq2: B6Ng01-080I18.g_75_391

seq1  ATCCCTAGGGTGATTTGCTTTGCTGGCTCCCCTGGATGGAGTGCAGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAGGGTGATTTGCTTTGCTGGCTCCCCTGGATGGAGTGCAGCAGC  50

seq1  AGGTGGGCTGTTGGGTGACACCCATGCTCTAGTAGCTGAGCAGGCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGCTGTTGGGTGACACCCATGCTCTAGTAGCTGAGCAGGCTCAGA  100

seq1  TGGGAGAAGGATGCAGGCTTGCGGATCATGCTGTGCTTGGAATGGGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAAGGATGCAGGCTTGCGGATCATGCTGTGCTTGGAATGGGCAGG  150

seq1  GTGGGGCTTTTCCCATTTTGTTTCTCATTTTCTTTACTCAGTAGGTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTTTTCCCATTTTGTTTCTCATTTTCTTTACTCAGTAGGTAGGG  200

seq1  CTGTGTGTATATGTGTGCTGGAGAGAGAGTATTTAGGGATTGGCATGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTATATGTGTGCTGGAGAGAGAGTATTTAGGGATTGGCATGAGT  250

seq1  ATCTGCATGTACAAGCGCGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATGTACAAGCGCGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGT  300

seq1  GTGTGTGTGTGTGTGTG  317
      |||||||||||||||||
seq2  GTGTGTGTGTGTGTGTG  317