BAC Information

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BAC

Clone NameB6Ng01-081C08
Chromosome1 (Build37)
Map Location 176,035,709 - 176,183,219
singlet/doubletdoublet
Overlap geneOlfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419
Upstream geneOlfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1
Downstream gene1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081C08.bB6Ng01-081C08.g
ACCDH896082DH896083
length4151,031
definitionDH896082|Mus musculus domesticus DNA, BAC clone: B6Ng01-081C08, 5' end.DH896083|Mus musculus domesticus DNA, BAC clone: B6Ng01-081C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,035,709 - 176,036,129)(176,182,184 - 176,183,219)
sequence
agaccccaggacccacatcaagtggctcacaactatctataactccagct
ccagttaaattacttcttacatttccatatacagaaacctaaacaatgca
gacattgtttatatataaatatttgggaaacaatacttataatcctacag
atctaaaggatctccccaaataattgcacttctaccatcttaaagattac
tacccaccaccatccatctttatgtaatttcagtgcagaacattttaaaa
tagtgtttttaatttcacatatgaaaatttcatgtaaaacattttgatcc
taatcaacctcctcatccaatttttcccagatctacacccaacttcctac
ctctctgactctattcctttattctttctcttctcttctcttctcttctc
ttctcttctcttatc
gaattctctttctcctgtaacatcagtttttttttatcataaagttatat
tttaggcattgtgtttaacttttcattgccttaattatcacttttaaaat
agaagtaatattagtaatccttaaatgtcatactaaatccataaaattga
tttaaacaatttatccatatttaccatttgatccataaaataaaatttaa
tcattcctgcgttgaactcatattatcaggtattactattttttccactg
tattagaaactagggctttatgccacagaaaaacatactgaagaaacacg
tatttttaaactgtcagtcatatgcaatgattaaccttgcctgactttgg
ggattttggaaagtttcatgttttccaaagggtgggatgtggatgagcat
ctgaaatcagatgtttgagctttgtaggaaaaataaagaaggtgaaaata
ggtggtgttactttctgaaagatgcacattcaaaagggagagattgggtg
aaaagaatagaacgacttgagagagatcaggataatcttcccaatggctt
tgagactagacacactatgaaagagttgcgacaaactcctcagtccactg
caaaaagagtctgtgttcctgttttcttataggtatattttataagttac
tcattttatctgtgaatttgcaaacatgaatcccttgttatgggatcttg
agtgtgtgatatccacttgattggattcagtttccttttcccaaaaatgt
attttaaccttatcttcctaaactcgagttttaaaaaagatttttcatgt
aaaaccatatatttgtttcatattagatacacaaattattgcagcttgaa
tcatgatcttagtttctctttgttcacaattcccttccctgttttcccca
gaagagtagtatcaactggtaataaaatcacaattagggtgttcctgaga
cagcacccgctgggacagcgaatcttctgagagagagctcttctttggaa
gaagcaaatatgggtcaccatctgaggctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_176035709_176036129
seq2: B6Ng01-081C08.b_48_468

seq1  GAATTCAGACCCCAGGACCCACATCAAGTGGCTCACAACTATCTATAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCCCAGGACCCACATCAAGTGGCTCACAACTATCTATAACT  50

seq1  CCAGCTCCAGTTAAATTACTTCTTACATTTCCATATACAGAAACCTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCAGTTAAATTACTTCTTACATTTCCATATACAGAAACCTAAAC  100

seq1  AATGCAGACATTGTTTATATATAAATATTTGGGAAACAATACTTATAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGACATTGTTTATATATAAATATTTGGGAAACAATACTTATAATC  150

seq1  CTACAGATCTAAAGGATCTCCCCAAATAATTGCACTTCTACCATCTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATCTAAAGGATCTCCCCAAATAATTGCACTTCTACCATCTTAAA  200

seq1  GATTACTACCCACCACCATCCATCTTTATGTAATTTCAGTGCAGAACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTACCCACCACCATCCATCTTTATGTAATTTCAGTGCAGAACATT  250

seq1  TTAAAATAGTGTTTTTAATTTCACATATGAAAATTTCATGTAAAACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAGTGTTTTTAATTTCACATATGAAAATTTCATGTAAAACATTT  300

seq1  TGATCCTAATCAACCTCCTCATCCAATTTTTCCCAGATCTACACCCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTAATCAACCTCCTCATCCAATTTTTCCCAGATCTACACCCAACT  350

seq1  TCCTACCTCTCTGACTCTATTCCTTTATTCTTTCTCTTCTCTTCTCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCTCTCTGACTCTATTCCTTTATTCTTTCTCTTCTCTTCTCTTCT  400

seq1  CTTCTCTTCTCTTCTCTTCTC  421
      |||||||||||||||||| ||
seq2  CTTCTCTTCTCTTCTCTTATC  421

seq1: chr1_176182184_176183219
seq2: B6Ng01-081C08.g_71_1101 (reverse)

seq1  TTAGCCCCAGATGGTGAACCATATCTGCTTCTCTCCAAAGAGGAGCTCTC  50
      |||||| |||||||||| |||||| ||||||| |||||||| ||||||||
seq2  TTAGCCTCAGATGGTGACCCATATTTGCTTCT-TCCAAAGAAGAGCTCTC  49

seq1  TCTCAGAGGATTCGGCTGTCCCAGCGGGTGCTGTCTCAGGAAACACACCT  100
      ||||||| ||||| |||||||||||||||||||||||||| ||||| |||
seq2  TCTCAGAAGATTC-GCTGTCCCAGCGGGTGCTGTCTCAGG-AACAC-CCT  96

seq1  AATTGTGATTTTTATTACCAGTTGATACTACTCTTCTGGGGAAAACAGGG  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGA-TTTTATTACCAGTTGATACTACTCTTCTGGGGAAAACAGGG  145

seq1  AAGGGAATTGTGAACAAAGAGAAACTAAGATCATGATTCAAGCTGCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATTGTGAACAAAGAGAAACTAAGATCATGATTCAAGCTGCAATA  195

seq1  ATTTGTGTATCTAATATGAAACAAATATATGGTTTTACATGAAAAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTATCTAATATGAAACAAATATATGGTTTTACATGAAAAATCTT  245

seq1  TTTTAAAACTCGAGTTTAGGAAGATAAGGTTAAAATACATTTTTGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACTCGAGTTTAGGAAGATAAGGTTAAAATACATTTTTGGGAAA  295

seq1  AGGAAACTGAATCCAATCAAGTGGATATCACACACTCAAGATCCCATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTGAATCCAATCAAGTGGATATCACACACTCAAGATCCCATAAC  345

seq1  AAGGGATTCATGTTTGCAAATTCACAGATAAAATGAGTAACTTATAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATTCATGTTTGCAAATTCACAGATAAAATGAGTAACTTATAAAAT  395

seq1  ATACCTATAAGAAAACAGGAACACAGACTCTTTTTGCAGTGGACTGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATAAGAAAACAGGAACACAGACTCTTTTTGCAGTGGACTGAGGA  445

seq1  GTTTGTCGCAACTCTTTCATAGTGTGTCTAGTCTCAAAGCCATTGGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCGCAACTCTTTCATAGTGTGTCTAGTCTCAAAGCCATTGGGAAG  495

seq1  ATTATCCTGATCTCTCTCAAGTCGTTCTATTCTTTTCACCCAATCTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTGATCTCTCTCAAGTCGTTCTATTCTTTTCACCCAATCTCTCC  545

seq1  CTTTTGAATGTGCATCTTTCAGAAAGTAACACCACCTATTTTCACCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAATGTGCATCTTTCAGAAAGTAACACCACCTATTTTCACCTTCT  595

seq1  TTATTTTTCCTACAAAGCTCAAACATCTGATTTCAGATGCTCATCCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCCTACAAAGCTCAAACATCTGATTTCAGATGCTCATCCACAT  645

seq1  CCCACCCTTTGGAAAACATGAAACTTTCCAAAATCCCCAAAGTCAGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTTTGGAAAACATGAAACTTTCCAAAATCCCCAAAGTCAGGCAA  695

seq1  GGTTAATCATTGCATATGACTGACAGTTTAAAAATACGTGTTTCTTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATCATTGCATATGACTGACAGTTTAAAAATACGTGTTTCTTCAGT  745

seq1  ATGTTTTTCTGTGGCATAAAGCCCTAGTTTCTAATACAGTGGAAAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTCTGTGGCATAAAGCCCTAGTTTCTAATACAGTGGAAAAAATA  795

seq1  GTAATACCTGATAATATGAGTTCAACGCAGGAATGATTAAATTTTATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACCTGATAATATGAGTTCAACGCAGGAATGATTAAATTTTATTTT  845

seq1  ATGGATCAAATGGTAAATATGGATAAATTGTTTAAATCAATTTTATGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCAAATGGTAAATATGGATAAATTGTTTAAATCAATTTTATGGAT  895

seq1  TTAGTATGACATTTAAGGATTACTAATATTACTTCTATTTTAAAAGTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATGACATTTAAGGATTACTAATATTACTTCTATTTTAAAAGTGAT  945

seq1  AATTAAGGCAATGAAAAGTTAAACACAATGCCTAAAATATAACTTTATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGCAATGAAAAGTTAAACACAATGCCTAAAATATAACTTTATGA  995

seq1  TAAAAAAAAACTGATGTTACAGGAGAAAGAGAATTC  1036
      ||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAACTGATGTTACAGGAGAAAGAGAATTC  1031