BAC Information

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BAC

Clone NameB6Ng01-081D20
Chromosome1 (Build37)
Map Location 167,240,745 - 167,420,309
singlet/doubletdoublet
Overlap geneGpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625
Upstream geneNme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl
Downstream geneMpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081D20.bB6Ng01-081D20.g
ACCDH896150DH896151
length1,2381,052
definitionDH896150|Mus musculus domesticus DNA, BAC clone: B6Ng01-081D20, 5' end.DH896151|Mus musculus domesticus DNA, BAC clone: B6Ng01-081D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,419,046 - 167,420,309)(167,240,745 - 167,241,807)
sequence
gaattcactctgcagaccaccaaactgtcctcaaactcatagagattcac
ctgcctttgactcctgagtgctgcaattaaagggacatggaactactgcc
catcgtccttgactctttgtgcctgtgtgtgtgtatgtgcctgtgtaagt
gtatacacatgtgtatggtacccaaggatgacagaaaagtacatcttatc
ccttggatctggagttataggcagttgcgaactgcccaaggtgggagctg
aaatctgtaactcaaatcctcatgatcaagtaacaagtgctcttaaccac
tggaccatctctccagctctgtccttgaacctaaaaaaatgtctgtacag
atagatacatgcgtgtgaagatacatgtagaggcaagaggacaacctcca
gtgttatgtcaccctcagaaattcacccatcttcattttgagacaaagat
tctcattggccggacgcttaccaattaagctctacaaagtatgacaattg
ggtttgattctggggtccacatggtgaagggatagaagtgacttccacaa
gttgtcctctgacatctacacatgtagcttggaaaacacacacacacaca
cacacacacacactagattcaaaagaaaatgcagaacgaaacatttaatt
aaaacataaatgcaaaaaaattagacaggtcaagagagtacagtttgtat
aagtaagcaaccactcaggttgagaaagaggacattgcctaaactcctcc
cgtgtggggagggcacatccctgagtgatggatgtgtggtctgctgagga
agctgcacaagtctgaagcataactagagctgtccacagtcgtcagtgat
gatcttcctgttggtcttggatccaaagctctccatggcttctgtgatgc
tcacgctccaaaggctgcatgcttgccatccaccatgccatcttggcagt
gggatgaaaactgtgaactatttgtgttggtccaacatttgccataagag
atcccaagactctgtactcaggatgaaattgaaatccctccaaatttctt
cccagttgccacaagtgccatcatgtctgtaggtgaccaccctggcacat
gcatctggatattggtgtaagtcaagcttttagccaattctttcctgctg
atgtctagacatagtagttttctcgcgtctgatactggctgctagatatg
atgtggccaagaactatcctctctgtggttaaatatag
gaattctagtacctccacttcctcctccggcagtaggaggaatgcccttc
aaggagtggtctattcagctaaccagtgcaaagccctcatcaccatcctg
gtggtcattggcgccttcatggtcacctggggcccctacatggttgtcat
tacctcagaggcactctgggggaagaactgtgtctccccaaccctggaga
cttgggccacatggctgtcctttaccagtgccatctgccaccctctgatc
tacggactctggaacaagactgtgcgcaaggagctcctgggcatgtgctt
tggggaccgttattaccgggaatcctttgtgcagcgacagaggacctcca
ggctcttcagcatttccaacaggatcacaggtaactaggaaaaagaccct
cacacctcaggcagatgtcacccggggtccttcccagtggctaagggcag
tgtcagggtggctgtggtctcaaggctgaaggtacagaagtcctgtgtga
agagccacactggagtagccacagtgactcccacaccgctttccaccact
tagctgtggaaggagtttgcagaaggaggaggacacaatagcccctggta
cccatccctggagaatgagacagggaccttgtgatttagaagttgatctt
ctggaactgtagccggggcctcaaggactggaggggatacccacttcttt
ttttatttttttttttttttgggttttttgagacagggtttctctgtata
gccctggcttgtcctggagcctcacttttgtagaccaggttggcccttga
actcagaaatccgcctgcctcttgcctctgagtgctgggaattaaaggcg
tgcgccaacaccacccggctttggcatgaggcttctggcagaagagaatc
agaggcttggggcagcttgcctttctttggtacaagtttcttcgtggtgc
ctccctctgatgcttctttcaaacctcactggatcatcaagctgtacctc
ctcctctctttcacttgagctttccctccaggccagtggttctctgatag
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_167419046_167420309
seq2: B6Ng01-081D20.b_44_1281 (reverse)

seq1  CTATATTTAACACCATGATGGTAAGCCCTTTGGCCACATCACTGAGTCAT  50
      |||||||||||  ||    ||  ||  | ||||||||||||     || |
seq2  CTATATTTAACCACAGAGAGGATAGTTC-TTGGCCACATCA---TATC-T  45

seq1  GGCAGACAATGATCCAAAGACAGCAGAAAACTACTATGCTCTGAGCATCA  100
       |||| || | |||   ||||   |||||||||||||| |||   |||||
seq2  AGCAGCCAGT-ATC---AGACGCGAGAAAACTACTATG-TCTAGACATCA  90

seq1  GCAAGAAAGGAGATGGCTAAAAAGGCTCTGACTTTCACCAAATTATTCCA  150
      ||| |||| ||  |||||||||  ||| |||||| ||||||  || ||||
seq2  GCAGGAAA-GAATTGGCTAAAA--GCT-TGACTTACACCAA--TA-TCCA  133

seq1  GAATGCATGTGCCAGGGTGGTCACCTTACAGACCATGATGGCACTGGTGG  200
      | ||||||||||||||||||||||| |||||| |||||||||||| ||||
seq2  G-ATGCATGTGCCAGGGTGGTCACC-TACAGA-CATGATGGCACTTGTGG  180

seq1  CAACTGGGAAGAAATTT-GAGGGATTTCAATTTCATCCTGAAGTACAGAG  249
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  CAACTGGGAAGAAATTTGGAGGGATTTCAATTTCATCCTG-AGTACAGAG  229

seq1  TCTTGGGATCTTCTTTATGGCAAATGTTGGACCAAACACAAATAGTTCAC  299
      |||||||||||   ||||||||||||||||||| ||||||||||||||||
seq2  TCTTGGGATCT--CTTATGGCAAATGTTGGACC-AACACAAATAGTTCAC  276

seq1  AGTTTTTCATCCCACTGCCAAGATGGCATGGTTGGATGGCAAGCATGCAG  349
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AG-TTTTCATCCCACTGCCAAGATGGCATGG-TGGATGGCAAGCATGCAG  324

seq1  CCTTTGGGAGCGTGAGCATCACAGAAGCCATGGAGAGCTTTGGATCCAAG  399
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTT-GGAGCGTGAGCATCACAGAAGCCATGGAGAGCTTTGGATCCAAG  373

seq1  ACCAACAGGAAGATCATCACTGACGACTGTGGACAGCTCTAGTTATGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGGAAGATCATCACTGACGACTGTGGACAGCTCTAGTTATGCTT  423

seq1  CAGACTTGTGCAGCTTCCTCAGCAGACCACACATCCATCACTCAGGGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGTGCAGCTTCCTCAGCAGACCACACATCCATCACTCAGGGATG  473

seq1  TGCCCTCCCCACACGGGAGGAGTTTAGGCAATGTCCTCTTTCTCAACCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCCCACACGGGAGGAGTTTAGGCAATGTCCTCTTTCTCAACCTG  523

seq1  AGTGGTTGCTTACTTATACAAACTGTACTCTCTTGACCTGTCTAATTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTGCTTACTTATACAAACTGTACTCTCTTGACCTGTCTAATTTTT  573

seq1  TTGCATTTATGTTTTAATTAAATGTTTCGTTCTGCATTTTCTTTTGAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTATGTTTTAATTAAATGTTTCGTTCTGCATTTTCTTTTGAATC  623

seq1  TAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCCAAGCTACATGTGTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCCAAGCTACATGTGTAG  673

seq1  ATGTCAGAGGACAACTTGTGGAAGTCACTTCTATCCCTTCACCATGTGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGAGGACAACTTGTGGAAGTCACTTCTATCCCTTCACCATGTGGA  723

seq1  CCCCAGAATCAAACCCAATTGTCATACTTTGTAGAGCTTAATTGGTAAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAATCAAACCCAATTGTCATACTTTGTAGAGCTTAATTGGTAAGC  773

seq1  GTCCGGCCAATGAGAATCTTTGTCTCAAAATGAAGATGGGTGAATTTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGCCAATGAGAATCTTTGTCTCAAAATGAAGATGGGTGAATTTCTG  823

seq1  AGGGTGACATAACACTGGAGGTTGTCCTCTTGCCTCTACATGTATCTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGACATAACACTGGAGGTTGTCCTCTTGCCTCTACATGTATCTTCA  873

seq1  CACGCATGTATCTATCTGTACAGACATTTTTTTAGGTTCAAGGACAGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCATGTATCTATCTGTACAGACATTTTTTTAGGTTCAAGGACAGAGC  923

seq1  TGGAGAGATGGTCCAGTGGTTAAGAGCACTTGTTACTTGATCATGAGGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGGTCCAGTGGTTAAGAGCACTTGTTACTTGATCATGAGGAT  973

seq1  TTGAGTTACAGATTTCAGCTCCCACCTTGGGCAGTTCGCAACTGCCTATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTACAGATTTCAGCTCCCACCTTGGGCAGTTCGCAACTGCCTATA  1023

seq1  ACTCCAGATCCAAGGGATAAGATGTACTTTTCTGTCATCCTTGGGTACCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGATCCAAGGGATAAGATGTACTTTTCTGTCATCCTTGGGTACCA  1073

seq1  TACACATGTGTATACACTTACACAGGCACATACACACACACAGGCACAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGTGTATACACTTACACAGGCACATACACACACACAGGCACAAA  1123

seq1  GAGTCAAGGACGATGGGCAGTAGTTCCATGTCCCTTTAATTGCAGCACTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGGACGATGGGCAGTAGTTCCATGTCCCTTTAATTGCAGCACTC  1173

seq1  AGGAGTCAAAGGCAGGTGAATCTCTATGAGTTTGAGGACAGTTTGGTGGT  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCAAAGGCAGGTGAATCTCTATGAGTTTGAGGACAGTTTGGTGGT  1223

seq1  CTGCAGAGTGAATTC  1264
      |||||||||||||||
seq2  CTGCAGAGTGAATTC  1238

seq1: chr1_167240745_167241807
seq2: B6Ng01-081D20.g_69_1120

seq1  GAATTCTAGTACCTCCACTTCCTCCTCCGGCAGTAGGAGGAATGCCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTACCTCCACTTCCTCCTCCGGCAGTAGGAGGAATGCCCTTC  50

seq1  AAGGAGTGGTCTATTCAGCTAACCAGTGCAAAGCCCTCATCACCATCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGGTCTATTCAGCTAACCAGTGCAAAGCCCTCATCACCATCCTG  100

seq1  GTGGTCATTGGCGCCTTCATGGTCACCTGGGGCCCCTACATGGTTGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCATTGGCGCCTTCATGGTCACCTGGGGCCCCTACATGGTTGTCAT  150

seq1  TACCTCAGAGGCACTCTGGGGGAAGAACTGTGTCTCCCCAACCCTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGAGGCACTCTGGGGGAAGAACTGTGTCTCCCCAACCCTGGAGA  200

seq1  CTTGGGCCACATGGCTGTCCTTTACCAGTGCCATCTGCCACCCTCTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCCACATGGCTGTCCTTTACCAGTGCCATCTGCCACCCTCTGATC  250

seq1  TACGGACTCTGGAACAAGACTGTGCGCAAGGAGCTCCTGGGCATGTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGACTCTGGAACAAGACTGTGCGCAAGGAGCTCCTGGGCATGTGCTT  300

seq1  TGGGGACCGTTATTACCGGGAATCCTTTGTGCAGCGACAGAGGACCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCGTTATTACCGGGAATCCTTTGTGCAGCGACAGAGGACCTCCA  350

seq1  GGCTCTTCAGCATTTCCAACAGGATCACAGGTAACTAGGAAAAAGACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTCAGCATTTCCAACAGGATCACAGGTAACTAGGAAAAAGACCCT  400

seq1  CACACCTCAGGCAGATGTCACCCGGGGTCCTTCCCAGTGGCTAAGGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCAGGCAGATGTCACCCGGGGTCCTTCCCAGTGGCTAAGGGCAG  450

seq1  TGTCAGGGTGGCTGTGGTCTCAAGGCTGAAGGTACAGAAGTCCTGTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGTGGCTGTGGTCTCAAGGCTGAAGGTACAGAAGTCCTGTGTGA  500

seq1  AGAGCCACACTGGAGTAGCCACAGTGACTCCCACACCGCTTTCCACCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACACTGGAGTAGCCACAGTGACTCCCACACCGCTTTCCACCACT  550

seq1  TAGCTGTGGAAGGAGTTTGCAGAAGGAGGAGGACACAATAGCCCCTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGGAAGGAGTTTGCAGAAGGAGGAGGACACAATAGCCCCTGGTA  600

seq1  CCCATCCCTGGAGAATGAGACAGGGACCTTGTGATTTAGAAGTTGATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCTGGAGAATGAGACAGGGACCTTGTGATTTAGAAGTTGATCTT  650

seq1  CTGGAACTGTAGCCGGGGCCTCAAGGACTGGAGGGGATACCCACTTCTTT  700
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  CTGGAACTGTAGCCGGGGCCTCAAGGACTGGAGGGGATACCCACTTC---  697

seq1  TTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGT  750
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTTTTATTTTTTTTTTTTTTTGGGTTTTTTGAGACAGGGTTTCTCTGT  747

seq1  ATAGCCCTGGC-TGTCCTGGAG-CTCAC-TTTGTAGACCAGGTTGG-CCT  796
      ||||||||||| |||||||||| ||||| ||||||||||||||||| |||
seq2  ATAGCCCTGGCTTGTCCTGGAGCCTCACTTTTGTAGACCAGGTTGGCCCT  797

seq1  TGAACTCAGAAATCCGCCTGCCTC-TGCCTCTGAGTGCT-GGAATTAAAG  844
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  TGAACTCAGAAATCCGCCTGCCTCTTGCCTCTGAGTGCTGGGAATTAAAG  847

seq1  GCGTGCGCCACCA-CACCCGGCTTTGGCAGGAGGCTTCTGGCAGAAGGAA  893
      |||||||||| || ||||||||||||||| |||||||||||||||||  |
seq2  GCGTGCGCCAACACCACCCGGCTTTGGCATGAGGCTTCTGGCAGAAG--A  895

seq1  GAATCAGAGCCTTGGGCCAGGCTGCCTTCTCCTTTGGTAAACAGTTTCCT  943
      ||||||||| |||||| |||  |||||  | |||||||| | ||||||  
seq2  GAATCAGAGGCTTGGGGCAGCTTGCCT--TTCTTTGGTACA-AGTTTC--  940

seq1  TCCGTGTGGCCTCCCTCTGATGCTCCTTCCAAACCTCACTGGATCACTCA  993
      | ||||  |||||||||||||||| ||| ||||||||||||||||| |||
seq2  TTCGTGGTGCCTCCCTCTGATGCTTCTTTCAAACCTCACTGGATCA-TCA  989

seq1  GCCTGTCCCTCCTCCCAAACTCTTGTCACCTTGAGCTTCCCCTCCAGGCC  1043
        |||| ||||||||    ||||| ||| ||||||||| |||||||||||
seq2  AGCTGTACCTCCTCC---TCTCTT-TCA-CTTGAGCTTTCCCTCCAGGCC  1034

seq1  AGTGGTTTCTTCTGATAGTC  1063
      |||||||   ||||||||||
seq2  AGTGGTT--CTCTGATAGTC  1052