BAC Information

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BAC

Clone NameB6Ng01-081F24
Chromosome1 (Build37)
Map Location 156,026,853 - 156,171,289
singlet/doubletdoublet
Overlap genenone
Upstream geneLamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081F24.bB6Ng01-081F24.g
ACCDH896250DH896251
length1,094961
definitionDH896250|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F24, 5' end.DH896251|Mus musculus domesticus DNA, BAC clone: B6Ng01-081F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,170,186 - 156,171,289)(156,026,853 - 156,027,834)
sequence
gaattcaaacaacttttagcacaattaatataagaacacattataataag
atggctccaaaagcaataatgaagagagccagaagaatgaagcatcagga
gaagaaccaagatagggaagaaagcaggctgagggatggaaagaacacag
tggaactggagagaaagaatgcacatgcccggaaacggtggagttgcact
ttaaagcacttaaaacgagccatattgccttaacctagaattgtataacc
attgaaaatgcctttcaaaaaaatgaaagcaaataacttctcacagtcga
atactgaaaaggcattttgacagcaaatctttagcataataaatgttaaa
ggaagtccttcagatggaagtctgcatctattaaagagggaccgaaatgg
caaccatgaggcagatatgtgatggtttttcttgtttaaatcacattttt
aaagatgattgactcatcccgagtgacactgagcaacaaagatggtacca
gtaagtagtgattgctgagaagacctctggggggaaaaaatcaaaagcta
gaagtgaacttgacctgataactagtttccatcagcaagctatatacatg
ttatgtcacatcagttgccgaggtggaagatgagacagtctccattctga
cacaacacccctgaaaattaagatccaaatgtttgagacaatggcattga
gagatcgagagctttggcaatacttacaggggataataataaaatggcag
acaacaccagcggtgcgggtaccccagtgcagaaccaatgcatccctttg
cagcacacaatcatgtgatgcaaggttatacatagggattctacaaagcc
aaagctatggcagtagcagaaagaaagactctcatgggttcagtctgaat
catctggaatcatataaaagtggctctgcagtaaacacaggacactgagc
tacttttgaaagaccatgaccaccctgggttatgaagatttctcctgaca
tagcctgattcagtggacagctttttgagcatcaagcattcatagtccta
gtggtgtgtcgcatctgtaccatccattctgtctgtgtgctttt
gaattccaagaccaatattacttcagaaaggatcatgcactggtgaccct
ccacttcgtcttcatgcaatctattcttcaaggctcagttgaagcctctg
ccatgaggaaggcttccctgctaattcgacactatcttctccctccatta
acaccttcacagtagttagcacctatcttattacttactgtgtcccttcc
catcccctgtcatgttctcacaaaccaccagaggcagaggcagaggcaga
ggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagagg
cagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggca
gaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggagag
gcagaggcagagaggcagaggcagaggcagaggcagaggcaggggtttaa
cacagcatctttgtctctcagagttgcttctagtgcagctgagacgatgt
ttgtaatgtagagaagttgttttacacacagattcaaagcaaaggctcag
gaactggaggacagaacatgccactgacgcgggagggaagccaatgttct
gaagaacttaagatctgtatggtggggggtaaggttctcaggagggaaaa
tactttcaggcagggcaaacaaacatgtggaggcaggagatgcaggtgtg
gggaaccactaagaatgggcccctcccagagggcccaatccggccagttc
ttctaagtaaatgttgtggcatctgtgtctcttcctctggcctttatgtg
tggacgtgtgtggtactgactggatgagatcaagtgttttaatgaacaga
ggcagtcgctctagacatggtttccatgcctggagtctgtcagctgtacc
gagtcacctgagatgttacatgacctgtttccagggactctgagtatgct
tgcatgacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_156170186_156171289
seq2: B6Ng01-081F24.b_48_1141 (reverse)

seq1  AAAAGCACACAG-CAGAAATAGGATGGTACAGATGCCGACCACACCACTA  49
      |||||||||||| |||||   |||||||||||||| ||| ||||||||| 
seq2  AAAAGCACACAGACAGAA--TGGATGGTACAGATG-CGA-CACACCACT-  45

seq1  AGGACTATGAATGGCCTTTGATGCTTCAAAAGCTTGGTCCACTGAATCAG  99
      |||||||||||||    ||||||||  |||||||  ||||||||||||||
seq2  AGGACTATGAATG---CTTGATGCTCAAAAAGCT--GTCCACTGAATCAG  90

seq1  GCTATTGTCAGGAGAAATC-TCATAACCCAGGGTGGTCATGGTCTTTCAA  148
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTA-TGTCAGGAGAAATCTTCATAACCCAGGGTGGTCATGGTCTTTCAA  139

seq1  AAGTAGCTCAGTTGTCCTGTTGTTTACTGCAGAGCCACTTTTATATGATT  198
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  AAGTAGCTCAG-TGTCCTG-TGTTTACTGCAGAGCCACTTTTATATGATT  187

seq1  CCAGATGATTCAGACTGAACCCATGAGAGTCTTTCTTTCTGCTACTGCCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGATTCAGACTGAACCCATGAGAGTCTTTCTTTCTGCTACTGCCA  237

seq1  TAGCTTTGGCTTTGTAGAATCCCTATGTATAACCTTGCATCACATGATTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGGCTTTGTAGAATCCCTATGTATAACCTTGCATCACATGATTG  287

seq1  TGTGCTGC-AAGGGATGCATTGGTTCTGCACTGGGGTACCCGCACCGCTG  347
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCAAAGGGATGCATTGGTTCTGCACTGGGGTACCCGCACCGCTG  337

seq1  GTGTTGTCTGCCATTTTATTATTATCCCCTGTAAGTATTGCCAAAGCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTCTGCCATTTTATTATTATCCCCTGTAAGTATTGCCAAAGCTCT  387

seq1  CGATCTCTCAATGCCATTGTCTCAAACATTTGGATCTTAATTTTCAGGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTCTCAATGCCATTGTCTCAAACATTTGGATCTTAATTTTCAGGGG  437

seq1  TGTTGTGTCAGAATGGAGACTGTCTCATCTTCCACCTCGGCAACTGATGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTCAGAATGGAGACTGTCTCATCTTCCACCTCGGCAACTGATGT  487

seq1  GACATAACATGTATATAGCTTGCTGATGGAAACTAGTTATCAGGTCAAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAACATGTATATAGCTTGCTGATGGAAACTAGTTATCAGGTCAAGT  537

seq1  TCACTTCTAGCTTTTGATTTTTTCCCCCCAGAGGTCTTCTCAGCAATCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTAGCTTTTGATTTTTTCCCCCCAGAGGTCTTCTCAGCAATCAC  587

seq1  TACTTACTGGTACCATCTTTGTTGCTCAGTGTCACTCGGGATGAGTCAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTGGTACCATCTTTGTTGCTCAGTGTCACTCGGGATGAGTCAAT  637

seq1  CATCTTTAAAAATGTGATTTAAACAAGAAAAACCATCACATATCTGCCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTAAAAATGTGATTTAAACAAGAAAAACCATCACATATCTGCCTC  687

seq1  ATGGTTGCCATTTCGGTCCCTCTTTAATAGATGCAGACTTCCATCTGAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGCCATTTCGGTCCCTCTTTAATAGATGCAGACTTCCATCTGAAG  737

seq1  GACTTCCTTTAACATTTATTATGCTAAAGATTTGCTGTCAAAATGCCTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTTTAACATTTATTATGCTAAAGATTTGCTGTCAAAATGCCTTT  787

seq1  TCAGTATTCGACTGTGAGAAGTTATTTGCTTTCATTTTTTTGAAAGGCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTCGACTGTGAGAAGTTATTTGCTTTCATTTTTTTGAAAGGCAT  837

seq1  TTTCAATGGTTATACAATTCTAGGTTAAGGCAATATGGCTCGTTTTAAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGGTTATACAATTCTAGGTTAAGGCAATATGGCTCGTTTTAAGT  887

seq1  GCTTTAAAGTGCAACTCCACCGTTTCCGGGCATGTGCATTCTTTCTCTCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAGTGCAACTCCACCGTTTCCGGGCATGTGCATTCTTTCTCTCC  937

seq1  AGTTCCACTGTGTTCTTTCCATCCCTCAGCCTGCTTTCTTCCCTATCTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACTGTGTTCTTTCCATCCCTCAGCCTGCTTTCTTCCCTATCTTG  987

seq1  GTTCTTCTCCTGATGCTTCATTCTTCTGGCTCTCTTCATTATTGCTTTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTCCTGATGCTTCATTCTTCTGGCTCTCTTCATTATTGCTTTTG  1037

seq1  GAGCCATCTTATTATAATGTGTTCTTATATTAATTGTGCTAAAAGTTGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTTATTATAATGTGTTCTTATATTAATTGTGCTAAAAGTTGTT  1087

seq1  TGAATTC  1104
      |||||||
seq2  TGAATTC  1094

seq1: chr1_156026853_156027834
seq2: B6Ng01-081F24.g_67_1027

seq1  GAATTCCAAGACCAATATTACTTCAGAAAGGATCATGCACTGGTGACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACCAATATTACTTCAGAAAGGATCATGCACTGGTGACCCT  50

seq1  CCACTTCGTCTTCATGCAATCTATTCTTCAAGGCTCAGTTGAAGCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCGTCTTCATGCAATCTATTCTTCAAGGCTCAGTTGAAGCCTCTG  100

seq1  CCATGAGGAAGGCTTCCCTGCTAATTCGACACTATCTTCTCCCTCCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGAAGGCTTCCCTGCTAATTCGACACTATCTTCTCCCTCCATTA  150

seq1  ACACCTTCACAGTAGTTAGCACCTATCTTATTACTTACTGTGTCCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCACAGTAGTTAGCACCTATCTTATTACTTACTGTGTCCCTTCC  200

seq1  CATCCCCTGTCATGTTCTCACAAACCACCAGAGGCAGAGGCAGAGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTGTCATGTTCTCACAAACCACCAGAGGCAGAGGCAGAGGCAGA  250

seq1  GGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGG  300

seq1  CAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCA  350

seq1  GAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGAGAG  400

seq1  GCAGAGGCAGAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGGGGTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGGGGTTTAA  450

seq1  CACAGCATCTTTGTCTCTCAGAGTTGCTTCTAGTGCAGCTGAGACGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATCTTTGTCTCTCAGAGTTGCTTCTAGTGCAGCTGAGACGATGT  500

seq1  TTGTAATGTAGAGAAGTTGTTTTACACACAGATTCAAAGCAAAGGCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGTAGAGAAGTTGTTTTACACACAGATTCAAAGCAAAGGCTCAG  550

seq1  GAACTGGAGGACAGAACATGCCACTGACGCGGGAGGGAAGCCAATGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAGGACAGAACATGCCACTGACGCGGGAGGGAAGCCAATGTTCT  600

seq1  GAAGAACTTAAGATCTGTATGGTGGGGGGTAAGGTTCTCAGGAGGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTTAAGATCTGTATGGTGGGGGGTAAGGTTCTCAGGAGGGAAAA  650

seq1  TACTTTCAGGCAGGGCAAACAAACATGTGGAGGCAGGAGATGCAGGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCAGGCAGGGCAAACAAACATGTGGAGGCAGGAGATGCAGGTGTG  700

seq1  GGGAACCACTAAGAATGGGCCCCTCCCAGAGGGCCCAATCCGGCCAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCACTAAGAATGGGCCCCTCCCAGAGGGCCCAATCCGGCCAGTTC  750

seq1  TTCTAAGTAAATGTTGTGGCATCTGTGTCTCTTTCCTCTGGGCTTTATGT  800
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TTCTAAGTAAATGTTGTGGCATCTGTGTCTC-TTCCTCTGGCCTTTATGT  799

seq1  GTGGCCGTGTGTGGTACTGACTGGATGAGGATCAAGTGTTTTAATGACCA  850
      |||| ||||||||||||||||||||||| |||||||||||||||||| ||
seq2  GTGGACGTGTGTGGTACTGACTGGATGA-GATCAAGTGTTTTAATGAACA  848

seq1  GAGGCAGTCGCTCTAGACCATGGTTTTCCATGCCTGGAAGTCTGGTCAGC  900
      ||||||||||||||||| ||||| ||||||||||||| ||||| ||||||
seq2  GAGGCAGTCGCTCTAGA-CATGG-TTTCCATGCCTGG-AGTCT-GTCAGC  894

seq1  TTGTACCCGAGTCAACCCTGAGATGTTTAACATGGACCTTGGTTTCACAG  950
       |||| ||||||||  |||||||||||  |||| |||||  ||||| || 
seq2  -TGTA-CCGAGTCA--CCTGAGATGTT--ACAT-GACCT--GTTTC-CA-  933

seq1  GGGACTCTTGAAAGTATTGCTTGCCAGACAGT  982
      ||||||||    |||| |||||||  ||||||
seq2  GGGACTCT---GAGTA-TGCTTGCATGACAGT  961