BAC Information

Click to search

BAC

Clone NameB6Ng01-081K15
Chromosome1 (Build37)
Map Location 43,839,905 - 43,996,574
singlet/doubletdoublet
Overlap geneUxs1, LOC666676, LOC100042303, EG666690, Tpp2
Upstream geneMrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik
Downstream geneA530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081K15.bB6Ng01-081K15.g
ACCDH896446DH896447
length1,093323
definitionDH896446|Mus musculus domesticus DNA, BAC clone: B6Ng01-081K15, 5' end.DH896447|Mus musculus domesticus DNA, BAC clone: B6Ng01-081K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,995,475 - 43,996,574)(43,839,905 - 43,840,227)
sequence
gaattctgagcaaatatctggaaaatgtgagcttcagaatagaaagaaaa
tagtatttcattactgaatgtcacaccagtacttgaaatttactaagttc
caacttcaaaggtagcacactcccaaatttgtttttcttcaaatgctctt
attaggtatcatcatagacacagttgttcaaggcagaaacagaagtgttt
ctctgtttatctagcttacaccttgcatcacagctaagaggaagtacttc
ctctaacaaaatttaaatctatttttctactttttatcaccattgtgcca
acttgccaaaccaatagcatttcttcctttcgtaaagcatgtatcagctt
cttaaactgagttgaaactcactctttgtgagggtcctgtaacaatctcc
tgtggtgtcacaaaaaaaaccctggcaacagtatacggtcactaatatac
aacaactaaaacttaattcaaaactacatgtgtaatgaatccgctatgtt
tgtggcagcacttaatgccagctgcactgtataaacattgtggtcttggc
tttaaacagtcaacatacatactctgtactgtgcaggccattataccaca
aagttcattgaatacttgtttgaaacacctcaggctgacttgaccctact
gtagtctacagactgtaatatttttactgcatgaaattttctactcttat
agaaacctaatggtccaatttcccaaaaaacaaaatttgtaatattttcc
atcatttcctcagcacataaatatcaaattaaaagttgatcaccctttca
gaaaaaaaactctccaatgattatttaatatatcctaaacttgattctca
tacatttttcacttcataagacataatccaacttgtattgatacacctta
aggggactctcatcagtttcttctatagagtttagttcttaagggcacag
gtgatatctccttgcattcaacttgccaacatacactcaacaacagtgct
ttcttttgttgactactgagtgataccaccatgattacctgccattactc
ctattctggaaaggcgttttcttattagccaaaactttctgga
aagacatgaacctggagagagtaactgatacagaggccatggaggaacag
tgctttaagtgacttgttcctctttgtgacttaactcagcttgctttctt
acagcacctaggcccaccagcccagggatagtactgcccacaataagctg
ggccttacagcattaatcaccaatcaagacaatgcccacaggcttgccca
aaggccaatttggtggggaattttctcaagtgaggttccctcttctcaaa
ccactcttaacttctaccaagctgacaaaaaaccaacaaaacaggcactt
gaggggttgggaggggtggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_43995475_43996574
seq2: B6Ng01-081K15.b_33_1125 (reverse)

seq1  TCCATGAAAGTTTATGGCTAATAAAGAAACAGACCTTACCAGAATTAGAG  50
      |||| |||||||| ||||||||||  ||||   |||| |||||||  |||
seq2  TCCA-GAAAGTTT-TGGCTAATAAGAAAAC--GCCTTTCCAGAATAGGAG  46

seq1  CTAATGGCAAGTAATCAATGCTGG-ATCACTCAGTAGTCAACAAAAGAAA  99
       |||||||| |||||| ||| ||| |||||||||||||||||||||| ||
seq2  -TAATGGCAGGTAATC-ATGGTGGTATCACTCAGTAGTCAACAAAAG-AA  93

seq1  AGCACTGTTGTTGAGTGTATGTTGGCAAGTTGAATTGCATGGAGATATCA  149
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  AGCACTGTTGTTGAGTGTATGTTGGCAAGTTGAA-TGCAAGGAGATATCA  142

seq1  CCTGTGCCCTT-AGAACTTAAACTCTAATAGAAGAAACTGATGAGAGTCC  198
      ||||||||||| ||||| |||||||| |||||||||||||||||||||||
seq2  CCTGTGCCCTTAAGAAC-TAAACTCT-ATAGAAGAAACTGATGAGAGTCC  190

seq1  CCCTAAGGTGTATTCATTACAAGTTGGATTATGTCTTATGAAGTGAAAAA  248
      || ||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  CCTTAAGGTGTA-TCAATACAAGTTGGATTATGTCTTATGAAGTGAAAAA  239

seq1  TGTATGAGAATCAAGTTTAGGATATATTAAATAATCATTGGAGAGTTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGAATCAAGTTTAGGATATATTAAATAATCATTGGAGAGTTTTT  289

seq1  TTTCTGAAAGGGTGATCAACTTTTAATTTGATATTTATGTGCTGAGG-AA  347
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTCTGAAAGGGTGATCAACTTTTAATTTGATATTTATGTGCTGAGGAAA  339

seq1  TGATGGAAAATATTACAAATTTTGTTTTTTGGG-AATTGGACCATTAGGT  396
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGATGGAAAATATTACAAATTTTGTTTTTTGGGAAATTGGACCATTAGGT  389

seq1  TTCTATAAGAGTAGAAAATTTCATGCAGTAAAAATATTACAGTCTGTAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAGAGTAGAAAATTTCATGCAGTAAAAATATTACAGTCTGTAGA  439

seq1  CTACAGTAGGGTCAAGTCAGCCTGAGGTGTTTCAAACAAGTATTCAATGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTAGGGTCAAGTCAGCCTGAGGTGTTTCAAACAAGTATTCAATGA  489

seq1  ACTTTGTGGTATAATGGCCTGCACAGTACAGAGTATGTATGTTGACTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGGTATAATGGCCTGCACAGTACAGAGTATGTATGTTGACTGTT  539

seq1  TAAAGCCAAGACCACAATGTTTATACAGTGCAGCTGGCATTAAGTGCTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAAGACCACAATGTTTATACAGTGCAGCTGGCATTAAGTGCTGC  589

seq1  CACAAACATAGCGGATTCATTACACATGTAGTTTTGAATTAAGTTTTAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACATAGCGGATTCATTACACATGTAGTTTTGAATTAAGTTTTAGT  639

seq1  TGTTGTATATTAGTGACCGTATACTGTTGCCAGGGTTTTTTTTGTGACAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTATATTAGTGACCGTATACTGTTGCCAGGGTTTTTTTTGTGACAC  689

seq1  CACAGGAGATTGTTACAGGACCCTCACAAAGAGTGAGTTTCAACTCAGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGATTGTTACAGGACCCTCACAAAGAGTGAGTTTCAACTCAGTT  739

seq1  TAAGAAGCTGATACATGCTTTACGAAAGGAAGAAATGCTATTGGTTTGGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCTGATACATGCTTTACGAAAGGAAGAAATGCTATTGGTTTGGC  789

seq1  AAGTTGGCACAATGGTGATAAAAAGTAGAAAAATAGATTTAAATTTTGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGCACAATGGTGATAAAAAGTAGAAAAATAGATTTAAATTTTGTT  839

seq1  AGAGGAAGTACTTCCTCTTAGCTGTGATGCAAGGTGTAAGCTAGATAAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGTACTTCCTCTTAGCTGTGATGCAAGGTGTAAGCTAGATAAAC  889

seq1  AGAGAAACACTTCTGTTTCTGCCTTGAACAACTGTGTCTATGATGATACC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACACTTCTGTTTCTGCCTTGAACAACTGTGTCTATGATGATACC  939

seq1  TAATAAGAGCATTTGAAGAAAAACAAATTTGGGAGTGTGCTACCTTTGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAGCATTTGAAGAAAAACAAATTTGGGAGTGTGCTACCTTTGAA  989

seq1  GTTGGAACTTAGTAAATTTCAAGTACTGGTGTGACATTCAGTAATGAAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAACTTAGTAAATTTCAAGTACTGGTGTGACATTCAGTAATGAAAT  1039

seq1  ACTATTTTCTTTCTATTCTGAAGCTCACATTTTCCAGATATTTGCTCAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTCTTTCTATTCTGAAGCTCACATTTTCCAGATATTTGCTCAGA  1089

seq1  ATTC  1100
      ||||
seq2  ATTC  1093

seq1: chr1_43839905_43840227
seq2: B6Ng01-081K15.g_77_399

seq1  AAGACAGGAACCTGGAGAGAGTAACTGATACAGAGGCCATGGAGGAACAG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGAACCTGGAGAGAGTAACTGATACAGAGGCCATGGAGGAACAG  50

seq1  TGCTTTAAGTGACTTGTTCCTCTTTGTGACTTAACTCAGCTTGCTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAGTGACTTGTTCCTCTTTGTGACTTAACTCAGCTTGCTTTCTT  100

seq1  ACAGCACCTAGGCCCACCAGCCCAGGGATAGTACTGCCCACAATAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCTAGGCCCACCAGCCCAGGGATAGTACTGCCCACAATAAGCTG  150

seq1  GGCCTTACAGCATTAATCACCAATCAAGACAATGCCCACAGGCTTGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTACAGCATTAATCACCAATCAAGACAATGCCCACAGGCTTGCCCA  200

seq1  AAGGCCAATTTGGTGGGGAATTTTCTCAAGTGAGGTTCCCTCTTCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAATTTGGTGGGGAATTTTCTCAAGTGAGGTTCCCTCTTCTCAAA  250

seq1  CCACTCTTAACTTCTACCAAGCTGACAAAAAACCAACAAAACAGGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTAACTTCTACCAAGCTGACAAAAAACCAACAAAACAGGCACTT  300

seq1  GAGGGGTTGGGAGGGGTGGGGTG  323
      |||||||||||||||||||||||
seq2  GAGGGGTTGGGAGGGGTGGGGTG  323