BAC Information

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BAC

Clone NameB6Ng01-081P13
Chromosome1 (Build37)
Map Location 111,619,858 - 111,787,651
singlet/doubletdoublet
Overlap geneEG666508
Upstream geneEG626474
Downstream geneCdh7, LOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081P13.bB6Ng01-081P13.g
ACCDH896668DH896669
length1,0871,085
definitionDH896668|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P13, 5' end.DH896669|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,786,557 - 111,787,651)(111,619,858 - 111,620,963)
sequence
gaattcttaggatgctgctattcataactcaagtatgcacatggcaatct
aaaggttatattacctgagacttttttcctagggcttttgtctgggatgt
tagaaatgttggagtcatctgataatactagcctattgcagtaaatctcc
ttccaaatatgccctggcaatgaaagcacaatacagttaatatgattaca
tgctgtgcacatagattaggcagatctacctctatactaccatcttcctc
agcttatgagaccccttagaacttgtgttttctccaggccatgtgcttca
gctctgcttttcttagtcttccacctcccctgtgtcttctccctcttcca
ttttctccttcttctctctctctctctcttcaccttccactccacctttc
cttttatctgcacaatcatcagctctcctttattttacaaattaaggtgg
gaagcaggtttacaggaaatcacctgagtactgactcattccttgttctc
aaccactcaaggagaatggaattgacatcaaatataattagccccagggc
tatccacaacactagctcacaaaagggccatgccccctcatatcagtcag
aacctttcaccatcaatacaaggtataaagtttacatctgctttagctgg
atggtggaccagcattttcttgtttgggtttagaaaatatggtctagtcc
tgactgtcctatctctctgtttttagttttgtttgtcctcattattttct
gtccttcttttcctcaccctctccatcatgttgtggactgttcacacatg
tatatagaacaactttggtaattgaaatggattaatcattccatcattct
agtcatcttgcttttgcagaatatttgattaaactgtgaacccctagatt
gtgttatttactgaaacaaaactagttgtggtgtggctcactcttagcac
acacctttatttcccctgatgggaatacagaaatgccctttatacacacc
tttaatcccaacatgattgcaagctatttatagaggtaagcacccatgta
tgaaagtgatgtctaatgagggttgaaaatgtgacaa
gaattcacagactattctgacctgattaggtacacatgtttgtgaggtat
tatgtaggtctcatttcctcaggtggaaggactcagccgctgttgttggc
actattccctaccatgtacattcaaggtatataagagaaaaaaagagaag
ctgggcatattgagcaactctaaaattttttttaaaacaaatctgtagct
ttcatatcaaacagacactttaacttagattttcttacttccaaccaatg
aagagtgaggcaggaattgcatttaactgccctttttaaaacaacttcag
ttatataaaaaagtaacaataaattacatacagtacttataaggcaaggt
acaaaattgtctctagaaaaaaaaacccagtaaattaagatctcaagttt
tcaaagattatttcctggatggaaatacagtgctgatactttgtagtggg
gatatgtgcctagtgctctctatcaagtaaatgtcagacaaggtagaaag
aaaagaaagacaatatcagtatggagaattaaatggaagagagaagaaaa
gattgaagacaatgaagtgggcagagtgtcgaactctagattcagttaat
tattgacttcaaaggtataaagaactacagatataaaaaacaatagcttg
aataaacgaaaacaacacagtgaggacaggaagagattcatcttcttgta
accataggaagtcttcagaggatattaaaaacagtcgtcaggagggagtc
accaaagctcctcaatcaaaggtaattgcttaccgtaagtaatgtctttt
tttttccttttccaatttttattaggtatttacctcatttacgtttccaa
tgctataccaaaagtcccccataccacgcccccccccactcccctaccca
cccaccccccctttttggccctggcgttcccctgtctgggcatatatgtt
gcacgtccatgggactcttcttgcagtgatggcgactaggcatctttttg
atacaaatgcagcttgagacaagagctcggggtactgctagttcattatg
gtccatatagtgcgattccatagctctggctactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_111786557_111787651
seq2: B6Ng01-081P13.b_45_1131 (reverse)

seq1  TTGTCACATTTTTCTACCACTCATTTAGACATCACTTTCATACATGGGTG  50
      |||||||| ||||| ||| |||| ||||||||||||||||||||||||||
seq2  TTGTCACA-TTTTCAACC-CTCA-TTAGACATCACTTTCATACATGGGTG  47

seq1  CTTACCTCTATAAATTAGCTTTGCAATCATTGTTTGGGATTAAAGGTGTG  100
      |||||||||||||| |||| ||||||||||   |||||||||||||||||
seq2  CTTACCTCTATAAA-TAGC-TTGCAATCAT--GTTGGGATTAAAGGTGTG  93

seq1  TATTAAGGGCATTTCTGTATTCCAATCAGGGGAAATAAAGGTGTGTGCTA  150
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATAAAGGGCATTTCTGTATTCCCATCAGGGGAAATAAAGGTGTGTGCTA  143

seq1  AGAGTTGAGCCACACCACAACTAGTTTTGTTTCAGTAAATAACACAATCT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAG-TGAGCCACACCACAACTAGTTTTGTTTCAGTAAATAACACAATCT  192

seq1  AGGGGTTCACAGTTTAATCAAATATTCTGCAAAAGCAAGATGACTAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTCACAGTTTAATCAAATATTCTGCAAAAGCAAGATGACTAGAAT  242

seq1  GATGGAATGATTAATCCATTTCAATTACCAAAGTTGTTCTATATACATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAATGATTAATCCATTTCAATTACCAAAGTTGTTCTATATACATGT  292

seq1  GTGAACAGTCCACAACATGATGGAGAGGGTGAGGAAAAGAAGGACAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAGTCCACAACATGATGGAGAGGGTGAGGAAAAGAAGGACAGAAA  342

seq1  ATAATGAGGACAAACAAAACTAAAAACAGAGAGATAGGACAGTCAGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGGACAAACAAAACTAAAAACAGAGAGATAGGACAGTCAGGACT  392

seq1  AGACCATATTTTCTAAACCCAAACAAGAAAATGCTGGTCCACCATCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATATTTTCTAAACCCAAACAAGAAAATGCTGGTCCACCATCCAGC  442

seq1  TAAAGCAGATGTAAACTTTATACCTTGTATTGATGGTGAAAGGTTCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGATGTAAACTTTATACCTTGTATTGATGGTGAAAGGTTCTGAC  492

seq1  TGATATGAGGGGGCATGGCCCTTTTGTGAGCTAGTGTTGTGGATAGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGAGGGGGCATGGCCCTTTTGTGAGCTAGTGTTGTGGATAGCCCT  542

seq1  GGGGCTAATTATATTTGATGTCAATTCCATTCTCCTTGAGTGGTTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAATTATATTTGATGTCAATTCCATTCTCCTTGAGTGGTTGAGAA  592

seq1  CAAGGAATGAGTCAGTACTCAGGTGATTTCCTGTAAACCTGCTTCCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATGAGTCAGTACTCAGGTGATTTCCTGTAAACCTGCTTCCCACC  642

seq1  TTAATTTGTAAAATAAAGGAGAGCTGATGATTGTGCAGATAAAAGGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGTAAAATAAAGGAGAGCTGATGATTGTGCAGATAAAAGGAAAG  692

seq1  GTGGAGTGGAAGGTGAAGAGAGAGAGAGAGAGAAGAAGGAGAAAATGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTGGAAGGTGAAGAGAGAGAGAGAGAGAAGAAGGAGAAAATGGAA  742

seq1  GAGGGAGAAGACACAGGGGAGGTGGAAGACTAAGAAAAGCAGAGCTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAAGACACAGGGGAGGTGGAAGACTAAGAAAAGCAGAGCTGAAG  792

seq1  CACATGGCCTGGAGAAAACACAAGTTCTAAGGGGTCTCATAAGCTGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCCTGGAGAAAACACAAGTTCTAAGGGGTCTCATAAGCTGAGGA  842

seq1  AGATGGTAGTATAGAGGTAGATCTGCCTAATCTATGTGCACAGCATGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTAGTATAGAGGTAGATCTGCCTAATCTATGTGCACAGCATGTAA  892

seq1  TCATATTAACTGTATTGTGCTTTCATTGCCAGGGCATATTTGGAAGGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAACTGTATTGTGCTTTCATTGCCAGGGCATATTTGGAAGGAGA  942

seq1  TTTACTGCAATAGGCTAGTATTATCAGATGACTCCAACATTTCTAACATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGCAATAGGCTAGTATTATCAGATGACTCCAACATTTCTAACATC  992

seq1  CCAGACAAAAGCCCTAGGAAAAAAGTCTCAGGTAATATAACCTTTAGATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAAAAGCCCTAGGAAAAAAGTCTCAGGTAATATAACCTTTAGATT  1042

seq1  GCCATGTGCATACTTGAGTTATGAATAGCAGCATCCTAAGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGCATACTTGAGTTATGAATAGCAGCATCCTAAGAATTC  1087

seq1: chr1_111619858_111620963
seq2: B6Ng01-081P13.g_69_1153

seq1  GAATTCACAGACTATTCTGACCTGATTAGGTACACATGTTTGTGAGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGACTATTCTGACCTGATTAGGTACACATGTTTGTGAGGTAT  50

seq1  TATGTAGGTCTCATTTCCTCAGGTGGAAGGACTCAGCCGCTGTTGTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGGTCTCATTTCCTCAGGTGGAAGGACTCAGCCGCTGTTGTTGGC  100

seq1  ACTATTCCCTACCATGTACATTCAAGGTATATAAGAGAAAAAAAGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCCCTACCATGTACATTCAAGGTATATAAGAGAAAAAAAGAGAAG  150

seq1  CTGGGCATATTGAGCAACTCTAAAATTTTTTTTAAAACAAATCTGTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATATTGAGCAACTCTAAAATTTTTTTTAAAACAAATCTGTAGCT  200

seq1  TTCATATCAAACAGACACTTTAACTTAGATTTTCTTACTTCCAACCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCAAACAGACACTTTAACTTAGATTTTCTTACTTCCAACCAATG  250

seq1  AAGAGTGAGGCAGGAATTGCATTTAACTGCCCTTTTTAAAACAACTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGAGGCAGGAATTGCATTTAACTGCCCTTTTTAAAACAACTTCAG  300

seq1  TTATATAAAAAAGTAACAATAAATTACATACAGTACTTATAAGGCAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAAAAAGTAACAATAAATTACATACAGTACTTATAAGGCAAGGT  350

seq1  ACAAAATTGTCTCTAGAAAAAAAAACCCAGTAAATTAAGATCTCAAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTGTCTCTAGAAAAAAAAACCCAGTAAATTAAGATCTCAAGTTT  400

seq1  TCAAAGATTATTTCCTGGATGGAAATACAGTGCTGATACTTTGTAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATTATTTCCTGGATGGAAATACAGTGCTGATACTTTGTAGTGGG  450

seq1  GATATGTGCCTAGTGCTCTCTATCAAGTAAATGTCAGACAAGGTAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTGCCTAGTGCTCTCTATCAAGTAAATGTCAGACAAGGTAGAAAG  500

seq1  AAAAGAAAGACAATATCAGTATGGAGAATTAAATGGAAGAGAGAAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGACAATATCAGTATGGAGAATTAAATGGAAGAGAGAAGAAAA  550

seq1  GATTGAAGACAATGAAGTGGGCAGAGTGTCGAACTCTAGATTCAGTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAGACAATGAAGTGGGCAGAGTGTCGAACTCTAGATTCAGTTAAT  600

seq1  TATTGACTTCAAAGGTATAAAGAACTACAGATATAAAAAACAATAGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTTCAAAGGTATAAAGAACTACAGATATAAAAAACAATAGCTTG  650

seq1  AATAAACGAAAACAACACAGTGAGGACAGGAAGAGATTCATCTTCTTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACGAAAACAACACAGTGAGGACAGGAAGAGATTCATCTTCTTGTA  700

seq1  ACCATAGGAAGTCTTCAGAGGATATTAAAAACAGTCGTCAGGAGGGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGGAAGTCTTCAGAGGATATTAAAAACAGTCGTCAGGAGGGAGTC  750

seq1  ACCAAAGCTCCTCAATCAAAGGTAATTGCTTACCGTAAGTAATGTCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCTCCTCAATCAAAGGTAATTGCTTACCGTAAGTAATGTCTTTT  800

seq1  TTTTTCCTTTTCCAATTTTTATTAGGTATTTACCTCATTTACGTTTCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTTTCCAATTTTTATTAGGTATTTACCTCATTTACGTTTCCAA  850

seq1  TGCTATACCAAAAGTCCCCCATACCCACGCCCCCCCCCACTCCCCTACCC  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCTATACCAAAAGTCCCCCATA-CCACGCCCCCCCCCACTCCCCTACCC  899

seq1  ACCCACCCCCCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAA  950
      ||||||||||||||||||||||||||||||||||| ||| ||||||||  
seq2  ACCCACCCCCCCTTTTTGGCCCTGGCGTTCCCCTG-TCT-GGGCATAT--  945

seq1  AGTTTGCAAGTCCAATGGGACTCTCTTTCCAGTGATGGCCGACTAGGCCA  1000
      |  ||||| |||| ||||||||||  || ||||||||| |||||||| ||
seq2  ATGTTGCACGTCC-ATGGGACTCTTCTTGCAGTGATGG-CGACTAGG-CA  992

seq1  TC-TTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGCTTA  1049
      || |||||||||| |||||||| ||| |||||||| ||||||||||| ||
seq2  TCTTTTTGATACAAATGCAGCTTGAGACAAGAGCT-CGGGGTACTGC-TA  1040

seq1  GTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCTTTG  1099
      |||||   |  || ||||  |||||   ||| ||| ||  ||||||  ||
seq2  GTTCA---TTATGGTCCA--TATAG---TGC-GATTCC-ATAGCTC--TG  1078

seq1  GCTACTT  1106
      |||||||
seq2  GCTACTT  1085