BAC Information

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BAC

Clone NameB6Ng01-082B04
Chromosome1 (Build37)
Map Location 82,446,638 - 82,594,501
singlet/doubletdoublet
Overlap geneCol4a4, Col4a3
Upstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1
Downstream gene5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082B04.bB6Ng01-082B04.g
ACCDH896736DH896737
length1,1801,032
definitionDH896736|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B04, 5' end.DH896737|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,593,313 - 82,594,501)(82,446,638 - 82,447,682)
sequence
gaattctacaaaacatgaaaatattgcaaatgtgacttttccctccagcc
tatacctttctcacgttaggcttcctattctttgtaggtatgtataggtt
tgtgtaggacaaacatgtgatcgccacaggtgcctcttaggtgagttcca
tgtgtgcccagggcacttattcactgaacacagcaccaggagttcacctg
tgtttgtcttaaaaatctctccatagcctttaggccactgtggcttttag
agattgagaccctctgagtgcttaagtagaaattcagggatactgtgaaa
gggccacccaggaagatggctgttctgttaaaatggtatcatcctagttt
ctccttaaactgaaaagggagttgaggtaaatgagctatggtgaaggtat
gttatgattaagagtttaggcggaagcctcatataaaccttgtggaacaa
aaatactctacacactgtgtgttttcacagggctcgggaagtcttttact
ccatgatggatggctgcccttttggctgaatgccacagtgcgagtatggt
cagctccagagggatgcaggaatgcagggcgttctccagctagacaaccc
tgcagttggaagaatacactggctaaagcttcagggccctttgtcagctg
caatactgagcaaagctagtctcacatttaacatcaggaagtccatattg
cacactggtaagtacagtcaaaatgatagaagtatgaggataaactccat
tcaattcactgcttttcctaggatcctactcaaagcaaccaatggcttat
cctcaggaaaatcctcaaagagaaagaccttccttggcttggtatgagca
gagactgggcggctgtgctgtgttgatcttgacctctgtctcaccaaaca
aaaccctgctatatttggagaaagcaacagcagaggagctggaggaaggt
gaccctgggaacatgaaaagaaacttgtttgtttcctaactagtttattt
ggactgagcgaataatataccttggtcttggtaatttgtaaataataaaa
atttattactcacagtttggaagactgagaaagtcaccatgagatgtaat
ggattcagtgtctgggaacactgcctctgctggcacaaagattctcatct
gtctttacagcgtaagacaggcaggacctc
gaattccaaactggagacatctcctgtgagaggctaggtggaaatctgtg
tgagagcaagaagcatggagaggggatagcaacccacacaagcagggacg
tgagtttcagtctggggagccaaccacatgaagcttggatccctggtggc
ttctgccggaaggaaacaccccatctatgctctagtacggagccctaaag
taattcccactagggatctagcacattccagccagtcaagggtgggggtc
ttgaaaaggacatttagataagaccagcacagtcatggattagtatatat
gcaaacctttgttcgtggtccccactgagtaaggctgttccaaaaacatt
gatatacagccaggtggaaagagaaatgataactttttaagatgacacgc
tcttctgtcccaagagtgcttttcctattgttttgccttctggaccattt
ctaaatacatcggtaatccttgtgctattcacaggaggaccgtggggtct
atactttgaagtgtttcatgctcactatcttgagtagctaaattgctctc
ttaattcaactagtcataactttcttgaagcatgttaatattctagcagc
aaggctgaagggggtttaacattgttatgtagcaaggcacgtgtgttcta
atagttcatatattcccaaccacctcttccgggaacatgttctcaggcca
agttcaggcctggtttagaatgataaatgtagaatctggaaacgtaagag
taatgtaaataaaggagaaatggacactcaaaaaatatttaacatgcaca
gcattgaacttagaatcaaatgggtcaatagaaaaacttctgttacatcg
agaaaatatcttatgttaaatagagatgtttggccctggttatatagcaa
gttccagaccaagcagagacacgtcttcaaagcaaaacaaaaccgtgttt
ttttttttttttttaaagctgggctctacacttctgggacgccaggcatt
gccagatattgagccatgtgagttgtgtagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82593313_82594501
seq2: B6Ng01-082B04.b_48_1227 (reverse)

seq1  GAGG-CCTGCCTGCTTTCCGCTGTATAAGACAGTATGGAGAATGCCTTTG  49
      |||| ||||||||  || ||||||| ||||||| || ||||||  |||||
seq2  GAGGTCCTGCCTGTCTTACGCTGTA-AAGACAG-AT-GAGAAT--CTTTG  45

seq1  TCGCAGCAGAGGGCAAGGTGTCCCCAGACACTGAATCCATTACCATCTTC  99
      |  ||||||| ||||  |||| |||||||||||||||||||| |||| ||
seq2  TGCCAGCAGA-GGCA--GTGTTCCCAGACACTGAATCCATTA-CATC-TC  90

seq1  ATGGTGAACTTCTCAGTC-TCCAAACTGTGAGTAATAAATTTTTATTATT  148
      |||||||  ||||||||| |||||||||||||||||||||||||||||||
seq2  ATGGTGACTTTCTCAGTCTTCCAAACTGTGAGTAATAAATTTTTATTATT  140

seq1  TACAAATTACCAAGACCAAGGTATATTATTCGCTCAGTCCAAATAAACTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTACCAAGACCAAGGTATATTATTCGCTCAGTCCAAATAAACTA  190

seq1  GTTAGGAAACAAACAAGTTTCTTTTCATGTTCCCAGGGTCACCTTCCTCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAAACAAACAAGTTTCTTTTCATGTTCCCAGGGTCACCTTCCTCC  240

seq1  AGCTCCTCCTGCTGTTGCTTTCTCCAAATATAGCAGGGTTTTGTTTGGTG  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCT-CTGCTGTTGCTTTCTCCAAATATAGCAGGGTTTTGTTTGGTG  289

seq1  AGACAGAGGTCAAGATCAACACAGCACAGCCGCCCAGTCTCTGCTCATAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGGTCAAGATCAACACAGCACAGCCGCCCAGTCTCTGCTCATAC  339

seq1  CAAGCCAAGGAAGGTCTTTCTCTTTGAGGATTTTCCTGAGGATAAGCCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAGGAAGGTCTTTCTCTTTGAGGATTTTCCTGAGGATAAGCCAT  389

seq1  TGGTTGCTTTGAGTAGGATCCTAGGAAAAGCAGTGAATTGAATGGAGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTTTGAGTAGGATCCTAGGAAAAGCAGTGAATTGAATGGAGTTT  439

seq1  ATCCTCATACTTCTATCATTTTGACTGTACTTACCAGTGTGCAATATGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATACTTCTATCATTTTGACTGTACTTACCAGTGTGCAATATGGA  489

seq1  CTTCCTGATGTTAAATGTGAGACTAGCTTTGCTCAGTATTGCAGCTGACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGATGTTAAATGTGAGACTAGCTTTGCTCAGTATTGCAGCTGACA  539

seq1  AAGGGCCCTGAAGCTTTAGCCAGTGTATTCTTCCAACTGCAGGGTTGTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCCTGAAGCTTTAGCCAGTGTATTCTTCCAACTGCAGGGTTGTCT  589

seq1  AGCTGGAGAACGCCCTGCATTCCTGCATCCCTCTGGAGCTGACCATACTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGAACGCCCTGCATTCCTGCATCCCTCTGGAGCTGACCATACTC  639

seq1  GCACTGTGGCATTCAGCCAAAAGGGCAGCCATCCATCATGGAGTAAAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTGGCATTCAGCCAAAAGGGCAGCCATCCATCATGGAGTAAAAGA  689

seq1  CTTCCCGAGCCCTGTGAAAACACACAGTGTGTAGAGTATTTTTGTTCCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCGAGCCCTGTGAAAACACACAGTGTGTAGAGTATTTTTGTTCCAC  739

seq1  AAGGTTTATATGAGGCTTCCGCCTAAACTCTTAATCATAACATACCTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTATATGAGGCTTCCGCCTAAACTCTTAATCATAACATACCTTCA  789

seq1  CCATAGCTCATTTACCTCAACTCCCTTTTCAGTTTAAGGAGAAACTAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTCATTTACCTCAACTCCCTTTTCAGTTTAAGGAGAAACTAGGA  839

seq1  TGATACCATTTTAACAGAACAGCCATCTTCCTGGGTGGCCCTTTCACAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCATTTTAACAGAACAGCCATCTTCCTGGGTGGCCCTTTCACAGT  889

seq1  ATCCCTGAATTTCTACTTAAGCACTCAGAGGGTCTCAATCTCTAAAAGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGAATTTCTACTTAAGCACTCAGAGGGTCTCAATCTCTAAAAGCC  939

seq1  ACAGTGGCCTAAAGGCTATGGAGAGATTTTTAAGACAAACACAGGTGAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCCTAAAGGCTATGGAGAGATTTTTAAGACAAACACAGGTGAAC  989

seq1  TCCTGGTGCTGTGTTCAGTGAATAAGTGCCCTGGGCACACATGGAACTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGCTGTGTTCAGTGAATAAGTGCCCTGGGCACACATGGAACTCA  1039

seq1  CCTAAGAGGCACCTGTGGCGATCACATGTTTGTCCTACACAAACCTATAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGGCACCTGTGGCGATCACATGTTTGTCCTACACAAACCTATAC  1089

seq1  ATACCTACAAAGAATAGGAAGCCTAACGTGAGAAAGGTATAGGCTGGAGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTACAAAGAATAGGAAGCCTAACGTGAGAAAGGTATAGGCTGGAGG  1139

seq1  GAAAAGTCACATTTGCAATATTTTCATGTTTTGTAGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCACATTTGCAATATTTTCATGTTTTGTAGAATTC  1180

seq1: chr1_82446638_82447682
seq2: B6Ng01-082B04.g_70_1101

seq1  GAATTCCAAACTGGAGACATCTCCTGTGAGAGGCTAGGTGGAAATCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACTGGAGACATCTCCTGTGAGAGGCTAGGTGGAAATCTGTG  50

seq1  TGAGAGCAAGAAGCATGGAGAGGGGATAGCAACCCACACAAGCAGGGACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCAAGAAGCATGGAGAGGGGATAGCAACCCACACAAGCAGGGACG  100

seq1  TGAGTTTCAGTCTGGGGAGCCAACCACATGAAGCTTGGATCCCTGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCAGTCTGGGGAGCCAACCACATGAAGCTTGGATCCCTGGTGGC  150

seq1  TTCTGCCGGAAGGAAACACCCCATCTATGCTCTAGTACGGAGCCCTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCGGAAGGAAACACCCCATCTATGCTCTAGTACGGAGCCCTAAAG  200

seq1  TAATTCCCACTAGGGATCTAGCACATTCCAGCCAGTCAAGGGTGGGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCACTAGGGATCTAGCACATTCCAGCCAGTCAAGGGTGGGGGTC  250

seq1  TTGAAAAGGACATTTAGATAAGACCAGCACAGTCATGGATTAGTATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGGACATTTAGATAAGACCAGCACAGTCATGGATTAGTATATAT  300

seq1  GCAAACCTTTGTTCGTGGTCCCCACTGAGTAAGGCTGTTCCAAAAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCTTTGTTCGTGGTCCCCACTGAGTAAGGCTGTTCCAAAAACATT  350

seq1  GATATACAGCCAGGTGGAAAGAGAAATGATAACTTTTTAAGATGACACGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACAGCCAGGTGGAAAGAGAAATGATAACTTTTTAAGATGACACGC  400

seq1  TCTTCTGTCCCAAGAGTGCTTTTCCTATTGTTTTGCCTTCTGGACCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTCCCAAGAGTGCTTTTCCTATTGTTTTGCCTTCTGGACCATTT  450

seq1  CTAAATACATCGGTAATCCTTGTGCTATTCACAGGAGGACCGTGGGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATACATCGGTAATCCTTGTGCTATTCACAGGAGGACCGTGGGGTCT  500

seq1  ATACTTTGAAGTGTTTCATGCTCACTATCTTGAGTAGCTAAATTGCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGAAGTGTTTCATGCTCACTATCTTGAGTAGCTAAATTGCTCTC  550

seq1  TTAATTCAACTAGTCATAACTTTCTTGAAGCATGTTAATATTCTAGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCAACTAGTCATAACTTTCTTGAAGCATGTTAATATTCTAGCAGC  600

seq1  AAGGCTGAAGGGGGTTTAACATTGTTATGTAGCAAGGCACGTGTGTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAAGGGGGTTTAACATTGTTATGTAGCAAGGCACGTGTGTTCTA  650

seq1  ATAGTTCATATATTCCCAACCACCTCTTCCGGGAACATGTTCTCAGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCATATATTCCCAACCACCTCTTCCGGGAACATGTTCTCAGGCCA  700

seq1  AGTTCAGGCCTGGTTTAGAATGATAAATGTAGAATCTGGAAACGTAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGGCCTGGTTTAGAATGATAAATGTAGAATCTGGAAACGTAAGAG  750

seq1  TAATGTAAATAAAGGAGAAATGGACACTCAAAAAATATTTAACATGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAATAAAGGAGAAATGGACACTCAAAAAATATTTAACATGCACA  800

seq1  GCATTGAACTTAGAATCAAATGGGTCAATAGAAAAACTTCTGTTACATCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAACTTAGAATCAAATGGGTCAATAGAAAAACTTCTGTTACATCG  850

seq1  AGAAAATATCTTATGTTAAAATAGAGATGTTTGGCCCTGGTTATATAGCA  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAAAATATCTTATGTT-AAATAGAGATGTTTGGCCCTGGTTATATAGCA  899

seq1  AGTTCCAGACCAAGCAGAGACAACGTCTTCAAAGCAAAACAAAAACCGTG  950
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  AGTTCCAGACCAAGCAGAGAC-ACGTCTTCAAAGCAAAAC-AAAACCGTG  947

seq1  TTTTTTTTTTTTTTTTTTTAAAGGCTGGGCTTCTAACACTTCTGGGACGC  1000
      |||||||||||||||||   || ||||||| ||| |||||||||||||||
seq2  TTTTTTTTTTTTTTTTT---AAAGCTGGGC-TCT-ACACTTCTGGGACGC  992

seq1  CAGGCAATTGCCAGGATATTGAAGCCAATGTGAGGTTGTGTAGCA  1045
      ||||| ||||||| ||||||| |||| |||||| |||||||||||
seq2  CAGGC-ATTGCCA-GATATTG-AGCC-ATGTGA-GTTGTGTAGCA  1032