BAC Information

Click to search

BAC

Clone NameB6Ng01-082F15
Chromosome1 (Build37)
Map Location 116,658,446 - 116,790,414
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082F15.bB6Ng01-082F15.g
ACCDH896930DH896931
length1,0471,224
definitionDH896930|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F15, 5' end.DH896931|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,789,328 - 116,790,414)(116,658,446 - 116,659,498)
sequence
gaattctctgggaagaaaatgtccaggaaagactgtctaaatcaagtttg
tctatgagcatgtctattgaattcagaagactgagcccactgtagcttgc
aaaattcccacaatcagtgatctttttttttttttttttttttttttttt
tggttttttgagacagtttttctctgtgaagccctggctgtcctgaaact
cactttgcagaccaggctggccttgaactcaaaaattcacctgcctctgc
ctccagagtgctgggattaaaggcgtgtgcaaccatgcccagcagtgatc
cttaacagtataagaacagataaatcaattttaccataatcatgaaatca
tgtgagcatgactattcatttatttatgttcttatcttgtctatggagaa
aacatgactagctgtttaaaatttttgccttgacttcaccacaaaatttg
gaattttaagttaaaaaacctcctttttcttcagagttacttttgtcaat
gtatttattataataacaacagtgaaactagaacaaacctgtttcctcag
tgtattaattttcactctttgtgtaaggagatctgccaaatagaacttta
tttttatttataattacatctttttgtgaacttcacttcacattgttgga
gtccttcattgcatggattataaagtgtttaatatgaagcaagttaaact
ttgttgactgctcaaactgaaagaagctcaataagacaaaattagaactc
atttaattttggggtttggaatttaatgtgtaataagttcctcatattct
tccagtcttcctggagaaaggcttcagtcttgaattccttactggtaaca
ctataaaaatttatttgcttgtaatgattgtgtatgagtatttatcccat
cccacgggattcagtcatttgtgggtgcgagagggacacaactgagatgg
aagagggagagagcagagacagtcgatgtactatcagttcatatagctga
gtgcctcattaaacactacaactttcacgatgtcttgacatctcccc
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccat
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagatagtatggatcaattcgca
ttcttctacacgataacaaccagttgtcccagcaccaatttttgaaaaag
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattctagatga
atttgcaaattgatttgagttgattttaatagctatcacattattagtat
gtttatctatcctcagaatgggaagttctttatatttgccctaccattta
aatgttctgttagagtctgtatgggacttgctcccttgacataaacctta
ttgcaaaaacttgtttaatcattccagtgaccccataaataaaaaattaa
tgactgaaataaacacatcaacaaggaaagggctttcacacatacaactt
gagtaccagaaagagtcagacacaaaaatataatgtttatgtttgtggat
attttgtttattttgtacagatgcatacatgtgtcatatgtggagaacgt
gaggaaaagctaaatatacaaagtacctacccattctttttaaatatatc
attaatcttatttacgcccagtcttcatcctaggtctagtccaccctgac
actctattcaatcctacttccatgttccagattgctcatccaagctccaa
tcctaacccagagtctctcagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116789328_116790414
seq2: B6Ng01-082F15.b_47_1093 (reverse)

seq1  GGGGAGATGTCAGAGACCATCCCGTGAGAAAGTTTTGTATGTATGTTTTA  50
      |||||||||||| ||| ||||    | |||||  |||||    |||||  
seq2  GGGGAGATGTCA-AGA-CATC----GTGAAAG--TTGTA---GTGTTT--  37

seq1  AAATGAGGCACCTCAGCCTAATAAATGAGACCTTGATAGGTACAATCGAC  100
       ||||||||| ||||||    || |||| ||  ||||| |||| ||||||
seq2  -AATGAGGCA-CTCAGC----TATATGA-AC--TGATA-GTAC-ATCGAC  76

seq1  TTGGTCTCCTGCCTCTCCTTCCCTTCCTCCCATTTCCTTCCAGGTTTGTG  150
      |  |||| ||| |||||  |||||  || |||| |     |||  |||| 
seq2  T--GTCT-CTG-CTCTC--TCCCT--CTTCCATCT-----CAG--TTGT-  110

seq1  GTCCCTCTCGCACCCACAAATGACTGAATCCCGTGGGATGGGATAAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTCGCACCCACAAATGACTGAATCCCGTGGGATGGGATAAATAC  160

seq1  TCATACACAATCATTACAAGCAAATAAATTTTTATAGTGTTACCAGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACACAATCATTACAAGCAAATAAATTTTTATAGTGTTACCAGTAAG  210

seq1  GAATTCAAGACTGAAGCCTTTCTCCAGGAAGACTGGAAGAATATGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTGAAGCCTTTCTCCAGGAAGACTGGAAGAATATGAGGAA  260

seq1  CTTATTACACATTAAATTCCAAACCCCAAAATTAAATGAGTTCTAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACACATTAAATTCCAAACCCCAAAATTAAATGAGTTCTAATTTT  310

seq1  GTCTTATTGAGCTTCTTTCAGTTTGAGCAGTCAACAAAGTTTAACTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTGAGCTTCTTTCAGTTTGAGCAGTCAACAAAGTTTAACTTGCT  360

seq1  TCATATTAAACACTTTATAATCCATGCAATGAAGGACTCCAACAATGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAAACACTTTATAATCCATGCAATGAAGGACTCCAACAATGTGA  410

seq1  AGTGAAGTTCACAAAAAGATGTAATTATAAATAAAAATAAAGTTCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTTCACAAAAAGATGTAATTATAAATAAAAATAAAGTTCTATTT  460

seq1  GGCAGATCTCCTTACACAAAGAGTGAAAATTAATACACTGAGGAAACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCTCCTTACACAAAGAGTGAAAATTAATACACTGAGGAAACAGG  510

seq1  TTTGTTCTAGTTTCACTGTTGTTATTATAATAAATACATTGACAAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTAGTTTCACTGTTGTTATTATAATAAATACATTGACAAAAGTA  560

seq1  ACTCTGAAGAAAAAGGAGGTTTTTTAACTTAAAATTCCAAATTTTGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAGAAAAAGGAGGTTTTTTAACTTAAAATTCCAAATTTTGTGGT  610

seq1  GAAGTCAAGGCAAAAATTTTAAACAGCTAGTCATGTCTTCTCCATAGACA  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAGTCAAGGCAAAAATTTTAAACAGCTAGTCATGTTTTCTCCATAGACA  660

seq1  AGATAAGAACATAAATAAATGAATAGTCATGCTCACATGATTTCATGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAACATAAATAAATGAATAGTCATGCTCACATGATTTCATGATT  710

seq1  ATGGTAAAATTGATTTATCTGTTCTTATACTGTTAAGGATCACTGCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAAATTGATTTATCTGTTCTTATACTGTTAAGGATCACTGCTGGG  760

seq1  CATGGTTGCACACGCCTTTAATCCCAGCACTCTGGAGGCAGAGGCAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGCACACGCCTTTAATCCCAGCACTCTGGAGGCAGAGGCAGGTG  810

seq1  AATTTCTGAGTTCAAGGCCAGCCTGGTCTGCAAAGTGAGTTTCAGGACAG  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGAGTTCAAGGCCAGCCTGGTCTGCAAAGTGAGTTTCAGGACAG  860

seq1  CCAGGGCTTCACAGAGAAAAACTGTCTCAAAAAACCAAAAAAAAAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTTCACAGAGAAAAACTGTCTCAAAAAACCAAAAAAAAAAAAAA  910

seq1  AAAAAAAAAAAAAAAGATCACTGATTGTGGGAATTTTGCAAGCTACAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGATCACTGATTGTGGGAATTTTGCAAGCTACAGTG  960

seq1  GGCTCAGTCTTCTGAATTCAATAGACATGCTCATAGACAAACTTGATTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTCTTCTGAATTCAATAGACATGCTCATAGACAAACTTGATTTA  1010

seq1  GACAGTCTTTCCTGGACATTTTCTTCCCAGAGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTTTCCTGGACATTTTCTTCCCAGAGAATTC  1047

seq1: chr1_116658446_116659498
seq2: B6Ng01-082F15.g_279_1289

seq1  GTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATT  50

seq1  TTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCATTTTCTCCTCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCATTTTCTCCTCTATA  100

seq1  AGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTT  150

seq1  GACCTTAGTACAAGGAGATAGTATGGATCAATTCGCATTCTTCTACACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAGTACAAGGAGATAGTATGGATCAATTCGCATTCTTCTACACGA  200

seq1  TAACAACCAGTTGTCCCAGCACCAATTTTTGAAAAAGCTGTCTTTCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACCAGTTGTCCCAGCACCAATTTTTGAAAAAGCTGTCTTTCTTCC  250

seq1  ACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGT  300

seq1  GGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTC  350

seq1  TCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCT  400

seq1  TTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGA  450

seq1  GTTTTTGCTATCCTAGGTTTTTTGTTATTCTAGATGAATTTGCAAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGCTATCCTAGGTTTTTTGTTATTCTAGATGAATTTGCAAATTGA  500

seq1  TTTGAGTTGATTTTAATAGCTATCACATTATTAGTATGTTTATCTATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTGATTTTAATAGCTATCACATTATTAGTATGTTTATCTATCCT  550

seq1  CAGAATGGGAAGTTCTTTATATTTGCCCTACCATTTAAATGTTCTGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGGAAGTTCTTTATATTTGCCCTACCATTTAAATGTTCTGTTAG  600

seq1  AGTCTGTATGGGACTTGCTCCCTTGACATAAACCTTATTGCAAAAACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTATGGGACTTGCTCCCTTGACATAAACCTTATTGCAAAAACTTG  650

seq1  TTTTAATCATTCCAGTGACCCCATAAATAAAAAAATTAATGAACTGAAAA  700
       ||||||||||||||||||||||||||| |||||||||||| |||| |||
seq2  -TTTAATCATTCCAGTGACCCCATAAAT-AAAAAATTAATG-ACTG-AAA  696

seq1  TAAACAACATCAAACAAGGAAAAGGGCTTTCACCACATACAACTTGAAGT  750
      ||||| ||||| ||||||| |||||||||||| ||||||||||||||   
seq2  TAAAC-ACATC-AACAAGG-AAAGGGCTTTCA-CACATACAACTTGA--G  740

seq1  TACCAAGAAAGAAGTCAGACACAAAAATATAATGTTTTATGTATGTGGAT  800
      |||| |||||| |||||||||||||||||||||| ||||||| |||||||
seq2  TACC-AGAAAG-AGTCAGACACAAAAATATAATG-TTTATGTTTGTGGAT  787

seq1  ATTTTGTTTA-TATGTACAGATGCATACATGTGTTCATATGTGGAG-ACG  848
      |||||||||| | |||||||||||||||||||| |||||||||||| |||
seq2  ATTTTGTTTATTTTGTACAGATGCATACATGTG-TCATATGTGGAGAACG  836

seq1  TGAAGAAAAGCTAATATTACACAAGTA-CTACCCATTCTTTTTAAAATTA  897
      ||| ||||||||||   |||| ||||| ||||||||||||||||||  ||
seq2  TGAGGAAAAGCTAAATATACA-AAGTACCTACCCATTCTTTTTAAATATA  885

seq1  TCATTAATCTATTTTTACAGCCCAGTCTTCATCCTCATGCTAGTCCACCC  947
      |||||||||| | ||||| ||||||||||||||||    |||||||||| 
seq2  TCATTAATCT-TATTTAC-GCCCAGTCTTCATCCTAGGTCTAGTCCACC-  932

seq1  TCTGACACATCTTATTCCAATTCCTACTTCCATGTTTCCAAGAGATTGCC  997
       ||||||| || |||||  | ||||||||||||||| |    ||||||| 
seq2  -CTGACAC-TC-TATTC--AATCCTACTTCCATGTTCC----AGATTGCT  973

seq1  CTCCCCAAACCCCAACAAGCTCCCCCATATCCTAGAGCCTCAAGTCTCTC  1047
      |  |           ||||||||     |||||  | ||   ||||||||
seq2  CATC-----------CAAGCTCC----AATCCT--AACCCAGAGTCTCTC  1006

seq1  AAGGGT  1053
       |||||
seq2  -AGGGT  1011