BAC Information

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BAC

Clone NameB6Ng01-082G16
Chromosome1 (Build37)
Map Location 153,238,879 - 153,361,890
singlet/doubletdoublet
Overlap gene1200016B10Rik, 1190005F20Rik, Rnf2
Upstream geneBC003331, Tpr, EG625534, EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp
Downstream geneNiban, Edem3, 1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082G16.bB6Ng01-082G16.g
ACCDH896975DH896976
length1,0961,103
definitionDH896975|Mus musculus domesticus DNA, BAC clone: B6Ng01-082G16, 5' end.DH896976|Mus musculus domesticus DNA, BAC clone: B6Ng01-082G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,360,773 - 153,361,890)(153,238,879 - 153,239,994)
sequence
gaattcctgtcctgacttccttctgtgattaacagtgctgtggagtgtaa
ggcaagtgaaccctttcctctctaacttgtttttggttatggtgattcac
tgaagcaatagaaaccctacccaagacaaatatcctagtcctataagagc
tagcccctgaactatatgcccaaaatatgacatgcatttgctgcatttat
ctgagacattccacgtgccatgttaaaggggggaaaaagctgcaacaaat
atccttttgcagattttaattggctttatttgcaagttctcaaatcagac
atgagtctagaccagaaactggttcagaatgttccacttcaccacttagg
caggttatatttatagccagaggaatggaaataatgtacggaacacggaa
aggaggtgcagacatagcccagctgtatacagctttgctgcattattgga
atgtgttttgaacagttggccactgaggctcagctagtttttgtaagagt
aggcaacaagccatttgcatgatgcaatgtgcatagaaaaagctttaagt
gaaattgaaatcgagagcctgctttagattaaactccagggggaaagcct
ttttctcagcataaacatacctgacagtggcttcgacctagcttagtaga
ctggttgttccttctgcgtttgaggatcaaatctagccttctgtgatgtc
agtctaaaagacatgccgaggcacagcaaatatgagagcagagagtttgt
cagagctagaatgagcagagagggaaacaggaagaaaagagaaaaaggca
gagttggagatgttacatgggtatagtgtgtgttacacaatcattgattc
tgcgttgggatcctcagcacccagtatggtgaacatctgtcatcctgctg
cggctaggcagaggcaggaggatccctggccaccattctagccagttggt
gagctcacactcagtagagaccctgcttaaaaataaagtattgctgtgtg
tgtttacagccaacctgtcaactgttctgtatgtactttctactgcttca
taaaacaccatgtcaagaatctagaaaagaagcattatttgagctt
gaattcatattagtaacctttagtttcataactttttagtacacaaagaa
agcaaactctaattagtgaagaagcatagtacctcaacctactttttaaa
aaattagtgcttattaaaatgtgtatgagtttttctgcatgtttgtgtac
tatgtgtgtccctggtcccctcagaggccagaagaaaacatcagattccc
tggaattggggttacagttgtgggtggccacgtgaatgctaggacctgac
tgggttctatgcaagaacaagtgccacttagtaaccacttagcctttcaa
tctactttcctatatggtcctttccgtaatcaaaataatctaaatacttc
agactaccagaggggggaaaatcaaacagtattatcatttcctacactta
caaagacatacttatagaaaactgatagatatatttataaataaatatag
atatttgtaaataattcaggaagatgtcaatgcctttttctgaaacctcc
atatttctatgaaagatccaatttatactaatcctccaagatcgttttta
ttattctctattatttttggatcagcatttgatcattaggtagcaaacat
atcacactggtaagtttagaatcttgctgagtagctggaataaatacctc
agctacaattaacaggctgtaacacttctcctagctacaaatgtgaactt
gaaataaacattaaattaagaaaaaaaaatcatgctggctaaatttggtg
tttcatttaaatgtagaaaagatcccgcaatacctctcctgggcatatat
ccagaagatgtcccaactggtaagaaggacacatgctccactatgttcat
agcagccttatttataatagccagaagctggaaagaacccagatgcccct
caacagaagaatggatacagaaatgtggtacattttcacaatggagtact
actcagctttaaaaagaatgaatttatgaaattcctagccaaatggatgg
actggagggcatcatcctgagtgaggtacccatcaaaagactctcacaaa
ttgtaccattgatagtggatataggccagaaacttaggataccaagatta
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_153360773_153361890
seq2: B6Ng01-082G16.b_44_1139 (reverse)

seq1  AAGCTCAAATAAATGCTTTCTTTTCTAGATTCCCTTGGACATGGTGTTTT  50
      |||||||||| ||||| |||||||||||||||   | |||||||||||||
seq2  AAGCTCAAAT-AATGC-TTCTTTTCTAGATTC---TTGACATGGTGTTTT  45

seq1  ATTGAAGCAGTAGAAAAGTAACCAATACAGAAACCAGTTTGACAGTGTGG  100
      | ||||||||||| ||||||    ||||||||  ||| |||||||  |||
seq2  A-TGAAGCAGTAG-AAAGTA---CATACAGAA--CAG-TTGACAGGTTGG  87

seq1  CTGTTAAACACAACAACAGCAAATACTTTAATTTTTTAAGCAGGGTCTCT  150
      ||| ||||||||   ||||| |||||||||  ||||||||||||||||| 
seq2  CTG-TAAACACA--CACAGC-AATACTTTA--TTTTTAAGCAGGGTCTC-  130

seq1  TACTGAGTGTTGAGCTCACCAACTGGCTAGAATGGTTGGCCAGGGATCCT  200
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  TACTGAGTG-TGAGCTCACCAACTGGCTAGAATGG-TGGCCAGGGATCCT  178

seq1  CCTGCCTCTGCCTAGCCGCAGCAGGATGACAGATGTTCACCATACTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCTAGCCGCAGCAGGATGACAGATGTTCACCATACTGGGT  228

seq1  GCTGAGGATCCCAACGCAGAATCAATGATTGTGTAACACACACTATACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGATCCCAACGCAGAATCAATGATTGTGTAACACACACTATACCC  278

seq1  ATGTAACATCTCCAACTCTGCCTTTTTCTCTTTTCTTCCTGTTTCCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACATCTCCAACTCTGCCTTTTTCTCTTTTCTTCCTGTTTCCCTCT  328

seq1  CTGCTCATTCTAGCTCTGACAAACTCTCTGCTCTCATATTTGCTGTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATTCTAGCTCTGACAAACTCTCTGCTCTCATATTTGCTGTGCCT  378

seq1  CGGCATGTCTTTTAGACTGACATCACAGAAGGCTAGATTTGATCCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCATGTCTTTTAGACTGACATCACAGAAGGCTAGATTTGATCCTCAAA  428

seq1  CGCAGAAGGAACAACCAGTCTACTAAGCTAGGTCGAAGCCACTGTCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAAGGAACAACCAGTCTACTAAGCTAGGTCGAAGCCACTGTCAGGT  478

seq1  ATGTTTATGCTGAGAAAAAGGCTTTCCCCCTGGAGTTTAATCTAAAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATGCTGAGAAAAAGGCTTTCCCCCTGGAGTTTAATCTAAAGCAG  528

seq1  GCTCTCGATTTCAATTTCACTTAAAGCTTTTTCTATGCACATTGCATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCGATTTCAATTTCACTTAAAGCTTTTTCTATGCACATTGCATCAT  578

seq1  GCAAATGGCTTGTTGCCTACTCTTACAAAAACTAGCTGAGCCTCAGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGGCTTGTTGCCTACTCTTACAAAAACTAGCTGAGCCTCAGTGGC  628

seq1  CAACTGTTCAAAACACATTCCAATAATGCAGCAAAGCTGTATACAGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTTCAAAACACATTCCAATAATGCAGCAAAGCTGTATACAGCTGG  678

seq1  GCTATGTCTGCACCTCCTTTCCGTGTTCCGTACATTATTTCCATTCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTCTGCACCTCCTTTCCGTGTTCCGTACATTATTTCCATTCCTCT  728

seq1  GGCTATAAATATAACCTGCCTAAGTGGTGAAGTGGAACATTCTGAACCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAAATATAACCTGCCTAAGTGGTGAAGTGGAACATTCTGAACCAG  778

seq1  TTTCTGGTCTAGACTCATGTCTGATTTGAGAACTTGCAAATAAAGCCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTCTAGACTCATGTCTGATTTGAGAACTTGCAAATAAAGCCAAT  828

seq1  TAAAATCTGCAAAAGGATATTTGTTGCAGCTTTTTCCCCCCTTTAACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTGCAAAAGGATATTTGTTGCAGCTTTTTCCCCCCTTTAACATG  878

seq1  GCACGTGGAATGTCTCAGATAAATGCAGCAAATGCATGTCATATTTTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTGGAATGTCTCAGATAAATGCAGCAAATGCATGTCATATTTTGGG  928

seq1  CATATAGTTCAGGGGCTAGCTCTTATAGGACTAGGATATTTGTCTTGGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGTTCAGGGGCTAGCTCTTATAGGACTAGGATATTTGTCTTGGGT  978

seq1  AGGGTTTCTATTGCTTCAGTGAATCACCATAACCAAAAACAAGTTAGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTATTGCTTCAGTGAATCACCATAACCAAAAACAAGTTAGAGA  1028

seq1  GGAAAGGGTTCACTTGCCTTACACTCCACAGCACTGTTAATCACAGAAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGTTCACTTGCCTTACACTCCACAGCACTGTTAATCACAGAAGG  1078

seq1  AAGTCAGGACAGGAATTC  1118
      ||||||||||||||||||
seq2  AAGTCAGGACAGGAATTC  1096

seq1: chr1_153238879_153239994
seq2: B6Ng01-082G16.g_68_1170

seq1  GAATTCATATTAGTAACCTTTAGTTTCATAACTTTTTAGTACACAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTAGTAACCTTTAGTTTCATAACTTTTTAGTACACAAAGAA  50

seq1  AGCAAACTCTAATTAGTGAAGAAGCATAGTACCTCAACCTACTTTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTCTAATTAGTGAAGAAGCATAGTACCTCAACCTACTTTTTAAA  100

seq1  AAATTAGTGCTTATTAAAATGTGTATGAGTTTTTCTGCATGTTTGTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTGCTTATTAAAATGTGTATGAGTTTTTCTGCATGTTTGTGTAC  150

seq1  TATGTGTGTCCCTGGTCCCCTCAGAGGCCAGAAGAAAACATCAGATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTCCCTGGTCCCCTCAGAGGCCAGAAGAAAACATCAGATTCCC  200

seq1  TGGAATTGGGGTTACAGTTGTGGGTGGCCACGTGAATGCTAGGACCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGGGGTTACAGTTGTGGGTGGCCACGTGAATGCTAGGACCTGAC  250

seq1  TGGGTTCTATGCAAGAACAAGTGCCACTTAGTAACCACTTAGCCTTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTATGCAAGAACAAGTGCCACTTAGTAACCACTTAGCCTTTCAA  300

seq1  TCTACTTTCCTATATGGTCCTTTCCGTAATCAAAATAATCTAAATACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTCCTATATGGTCCTTTCCGTAATCAAAATAATCTAAATACTTC  350

seq1  AGACTACCAGAGGGGGGAAAATCAAACAGTATTATCATTTCCTACACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACCAGAGGGGGGAAAATCAAACAGTATTATCATTTCCTACACTTA  400

seq1  CAAAGACATACTTATAGAAAACTGATAGATATATTTATAAATAAATATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACATACTTATAGAAAACTGATAGATATATTTATAAATAAATATAG  450

seq1  ATATTTGTAAATAATTCAGGAAGATGTCAATGCCTTTTTCTGAAACCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAAATAATTCAGGAAGATGTCAATGCCTTTTTCTGAAACCTCC  500

seq1  ATATTTCTATGAAAGATCCAATTTATACTAATCCTCCAAGATCGTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTATGAAAGATCCAATTTATACTAATCCTCCAAGATCGTTTTTA  550

seq1  TTATTCTCTATTATTTTTGGATCAGCATTTGATCATTAGGTAGCAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCTATTATTTTTGGATCAGCATTTGATCATTAGGTAGCAAACAT  600

seq1  ATCACACTGGTAAGTTTAGAATCTTGCTGAGTAGCTGGAATAAATACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACTGGTAAGTTTAGAATCTTGCTGAGTAGCTGGAATAAATACCTC  650

seq1  AGCTACAATTAACAGGCTGTAACACTTCTCCTAGCTACAAATGTGAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAATTAACAGGCTGTAACACTTCTCCTAGCTACAAATGTGAACTT  700

seq1  GAAATAAACATTAAATTAAGAAAAAAAAATCATGCTGGCTAAATTTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAACATTAAATTAAGAAAAAAAAATCATGCTGGCTAAATTTGGTG  750

seq1  TTTCATTTAAATGTAGAAAAGATCCCGCAATACCTCTCCTGGGCATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTAAATGTAGAAAAGATCCCGCAATACCTCTCCTGGGCATATAT  800

seq1  CCAGAAGATGTCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGATGTCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT  850

seq1  AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCT  900

seq1  CAACAGAAGAATGGATACAGAAAATGTGGTACATTTTCACAATGGAGTAC  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAACAGAAGAATGGATACAG-AAATGTGGTACATTTTCACAATGGAGTAC  949

seq1  TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCT-TTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT  998

seq1  GGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACT  1050
      ||| |||||||||||||||||||||||||||  || |||| ||||  |||
seq2  GGA-CTGGAGGGCATCATCCTGAGTGAGGTA--CCCATCA-AAAG--ACT  1042

seq1  CTCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGA  1100
      |||||||  ||||| || |||| |||||||| ||| ||||||||||||||
seq2  CTCACAAATTGTAC-CATTGAT-AGTGGATA-TAGGCCAGAAACTTAGGA  1089

seq1  TACCCAAGATATAAGA  1116
      || ||||||| |||||
seq2  TA-CCAAGAT-TAAGA  1103