BAC Information

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BAC

Clone NameB6Ng01-082M01
Chromosome1 (Build37)
Map Location 20,227,666 - 20,228,521
singlet/doubletsinglet
Overlap genePkhd1
Upstream geneTcfap2b, LOC100040198, LOC226901
Downstream geneIl17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082M01.bB6Ng01-082M01.g
ACCDH897216DH897217
length388861
definitionDH897216|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M01, 5' end.DH897217|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctcctgtctaaagtaaatatagggacaaagagtagaacagagactgaagg
aaaggctatccagagactgttccatctggagatccatcccacatacagac
accaaacactgacactattgcttatgctaagaagcacttgctgacaggag
cctgatatccctgttttctgagaggctttgcctgatcctaaccaatacag
atgtagatgctttcaggcaaccattggactcagcccagggaccccagtgg
aggagttaggggaaggactaaatgagctgaaggggagttatctggcatca
ctaggaggggaggccattggtcctgtgaagacttgctgccctagtgtaga
ggaatgttgggacagtgaggggattggatggatgggtg

gaattccacactgttaggatttggatgaaatggcattactgaacagatat
gctctggcagtatgctgcatcaatgtccacatctattaagtttgtttact
aactagtttgtttattatctctctcatgttgggatttctgtaggtgtgga
cagatgggttgaaagtcttccttcaggcataacacacataggactgggca
gatgggttccaataagcaacctttaggcctggaacacatgggtgagagga
aaagagacacactattatctagtgatgggtaaaatcaagttagaaataga
cataatttaaaatctaaaatatcaaaagcaaaactggaggctggcacatt
gctgttttctttcaatggtgtaaatctcagcctggtagttattggttata
agtgaccccagaagcctggaaagaagatctctggtcataagaagatggct
tcaaacacttttttactgacacaagcacatttcatttcattaaatatttc
catcagtgattagatgagtgttttagagactgctgaacaaacgggagaat
aatcttaatcagaaatgaaaatgtttcccagggcagagagatgagcaaaa
ataacataatgaaggaacaggttaaaaagacaagagacttacgtgtccca
atacccaaggtaaaagaaaagaagcctttgtacaagtgtatggtgggaaa
attgggtatttgaggcaacacatggagaaagagcaggaattacagatgca
aagatcgttgccaagactgacggcatgaggtggctggaaaagtcagctga
cttgtaggcacaccatgtcttgttctgattagttggaagccaacgatatt
gaacaacttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_20227666_20228521
seq2: B6Ng01-082M01.g_67_927

seq1  GAATTCCACACTGTTAGGATTTGGATGAAATGGCATTACTGAACAGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTGTTAGGATTTGGATGAAATGGCATTACTGAACAGATAT  50

seq1  GCTCTGGCAGTATGCTGCATCAATGTCCACATCTATTAAGTTTGTTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCAGTATGCTGCATCAATGTCCACATCTATTAAGTTTGTTTACT  100

seq1  AACTAGTTTGTTTATTATCTCTCTCATGTTGGGATTTCTGTAGGTGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTTTGTTTATTATCTCTCTCATGTTGGGATTTCTGTAGGTGTGGA  150

seq1  CAGATGGGTTGAAAGTCTTCCTTCAGGCATAACACACATAGGACTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGTTGAAAGTCTTCCTTCAGGCATAACACACATAGGACTGGGCA  200

seq1  GATGGGTTCCAATAAGCAACCTTTAGGCCTGGAACACATGGGTGAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTTCCAATAAGCAACCTTTAGGCCTGGAACACATGGGTGAGAGGA  250

seq1  AAAGAGACACACTATTATCTAGTGATGGGTAAAATCAAGTTAGAAATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACACACTATTATCTAGTGATGGGTAAAATCAAGTTAGAAATAGA  300

seq1  CATAATTTAAAATCTAAAATATCAAAAGCAAAACTGGAGGCTGGCACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTAAAATCTAAAATATCAAAAGCAAAACTGGAGGCTGGCACATT  350

seq1  GCTGTTTTCTTTCAATGGTGTAAATCTCAGCCTGGTAGTTATTGGTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTCTTTCAATGGTGTAAATCTCAGCCTGGTAGTTATTGGTTATA  400

seq1  AGTGACCCCAGAAGCCTGGAAAGAAGATCTCTGGTCATAAGAAGATGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCCCAGAAGCCTGGAAAGAAGATCTCTGGTCATAAGAAGATGGCT  450

seq1  TCAAACACTTTTTTACTGACACAAGCACATTTCATTTCATTAAATATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACACTTTTTTACTGACACAAGCACATTTCATTTCATTAAATATTTC  500

seq1  CATCAGTGATTAGATGAGTGTTTTAGAGACTGCTGAACAAACGGGAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGATTAGATGAGTGTTTTAGAGACTGCTGAACAAACGGGAGAAT  550

seq1  AATCTTAATCAGAAATGAAAATGTTTCCCAGGGCAGAGAGATGAGCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAATCAGAAATGAAAATGTTTCCCAGGGCAGAGAGATGAGCAAAA  600

seq1  ATAACATAATGAAGGAACAGG-TAAAAAGACAAGAGACTTACGTGTCCCA  649
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAACATAATGAAGGAACAGGTTAAAAAGACAAGAGACTTACGTGTCCCA  650

seq1  ATACCCAAGGTAAAAGAAAAGAAGCC-TTGTACAAGTGTATGGTGGGAAA  698
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATACCCAAGGTAAAAGAAAAGAAGCCTTTGTACAAGTGTATGGTGGGAAA  700

seq1  ATT-GGTATTTGAGGCAACACATGGAGAAAGAGCAGGAATTACAGATGCA  747
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTATTTGAGGCAACACATGGAGAAAGAGCAGGAATTACAGATGCA  750

seq1  AAGATCGTTGCCAAGACTGACGGCATGAGGTGGCTGGAAAAGTCAGCTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCGTTGCCAAGACTGACGGCATGAGGTGGCTGGAAAAGTCAGCTGA  800

seq1  CTTGTAGGCACACCATGTC-TGTTCTGA-TAGCTGGAAGCCAACGATATT  845
      ||||||||||||||||||| |||||||| ||| |||||||||||||||||
seq2  CTTGTAGGCACACCATGTCTTGTTCTGATTAGTTGGAAGCCAACGATATT  850

seq1  GAACAACTTCT  856
      |||||||||||
seq2  GAACAACTTCT  861


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