BAC Information

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BAC

Clone NameB6Ng01-082M04
Chromosome1 (Build37)
Map Location 155,441,346 - 155,586,012
singlet/doubletdoublet
Overlap geneLOC626096, Rgs8
Upstream geneRgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl
Downstream geneRgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082M04.bB6Ng01-082M04.g
ACCDH897222DH897223
length981568
definitionDH897222|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M04, 5' end.DH897223|Mus musculus domesticus DNA, BAC clone: B6Ng01-082M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,441,346 - 155,442,333)(155,585,440 - 155,586,012)
sequence
gaattcaaggccagacagggctatgtagagaaaccctgtctcaaaaacaa
aaccacaagacccacccacccccatcccgtagtctttgttctaatttttt
cctaattgtgtattcaccaattaagttcataataactagcaaacaaataa
cagacagggcagtcgagatggctagctgggtaaaggggactgctaccaag
cttgaggacttgagcttgggtcttcaggatccacatgagagagagagaga
gagagagagagagagagagagagagagagagagagagatctttcctgaaa
actgtcttctgatctctacgtgtgccatggcatacatgtatgtaccaact
cgctcagaggataatggttatctaatttcttcaaagccgtgcacaagaca
gtggtagggagatgctgtgtgtggtatgtggattgactctcagaccatga
ctgcttccctgtgcccgcttccctgctagaaagaacctgtgtgatgcttc
ttgcttgttaccactcttgggtgagagttgtctcccgggttagacactta
ctagtggctgcagttggtgtgaccagagtccccggggcacagtggctttg
attacagcagactctgaagtgttctgcttctattagagcaccagccagcc
accggaaggactttggagacacagcatttttttctgtagaacctttcaat
gggaagaatgctgaaatgtacttttttcttcttgggaaagctccaagctg
gatgaatgatgtagcttggtattgttattttttgtttttcacagctgccc
aaattactgtggttctcctggtccattcatgatatcttgtttgaatgaat
gtgctaagatagggactgcacttctttgtttgatatgtcttgtttgacgg
gggttgttcattttagcttagagcatccttgccatccattgctcaaagca
ctgacccctagtagtgaagatctcatttagt
tatgcagtaaggaaaacaatgttttgtcactttcaggatacagaattcca
tctcctagggggcttctccagcagtaaggactgctctatgctctgtgaag
taaaaggtcgggaaaggaagatgggagggagtgggaaggaggaaaggaaa
gggaggcgaggaaggaggctggagatgcagctcagtggtcttgtctagag
aaagggcacttgagaatgtgcatgcacagagagagaaggaggaggaggaa
gaggaagaagaggaagaagaagagatcaaaatgcctggattatatagaga
agaggcattgggggaagggcagcccagcccctgggctgaaagttcagggt
taggggcagggtatgccaggtgagactgagggatgctgggagaacctaga
ggccaggtctgctttgatatgaaaaatttgcacctcagtcccttgtgcct
gtccagtccagtccgaaaccaaacatctggaacaatagttcaggtagact
cccctcactgagccagaccctatgaagggtgacccagttagtcaacctga
tccactgttccccaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155441346_155442333
seq2: B6Ng01-082M04.b_47_1027

seq1  GAATTCAAGGCCAGACAGGGCTATGTAGAGAAACCCTGTCTCAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGACAGGGCTATGTAGAGAAACCCTGTCTCAAAAACAA  50

seq1  AACCACAAGACCCACCCACCCCCATCCCGTAGTCTTTGTTCTAATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAGACCCACCCACCCCCATCCCGTAGTCTTTGTTCTAATTTTTT  100

seq1  CCTAATTGTGTATTCACCAATTAAGTTCATAATAACTAGCAAACAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTGTGTATTCACCAATTAAGTTCATAATAACTAGCAAACAAATAA  150

seq1  CAGACAGGGCAGTCGAGATGGCTAGCTGGGTAAAGGGGACTGCTACCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGCAGTCGAGATGGCTAGCTGGGTAAAGGGGACTGCTACCAAG  200

seq1  CTTGAGGACTTGAGCTTGGGTCTTCAGGATCCACATGAGAGAGAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGACTTGAGCTTGGGTCTTCAGGATCCACATGAGAGAGAGAGAGA  250

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTTCCTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTTCCTGAAA  300

seq1  ACTGTCTTCTGATCTCTACGTGTGCCATGGCATACATGTATGTACCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTCTGATCTCTACGTGTGCCATGGCATACATGTATGTACCAACT  350

seq1  CGCTCAGAGGATAATGGTTATCTAATTTCTTCAAAGCCGTGCACAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCAGAGGATAATGGTTATCTAATTTCTTCAAAGCCGTGCACAAGACA  400

seq1  GTGGTAGGGAGATGCTGTGTGTGGTATGTGGATTGACTCTCAGACCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGGGAGATGCTGTGTGTGGTATGTGGATTGACTCTCAGACCATGA  450

seq1  CTGCTTCCCTGTGCCCGCTTCCCTGCTAGAAAGAACCTGTGTGATGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCTGTGCCCGCTTCCCTGCTAGAAAGAACCTGTGTGATGCTTC  500

seq1  TTGCTTGTTACCACTCTTGGGTGAGAGTTGTCTCCCGGGTTAGACACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTACCACTCTTGGGTGAGAGTTGTCTCCCGGGTTAGACACTTA  550

seq1  CTAGTGGCTGCAGTTGGTGTGACCAGAGTCCCCGGGGCACAGTGGCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGCTGCAGTTGGTGTGACCAGAGTCCCCGGGGCACAGTGGCTTTG  600

seq1  ATTACAGCAGACTCTGAAGTGTTCTGCTTCTATTAGAGCACCAGCCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGCAGACTCTGAAGTGTTCTGCTTCTATTAGAGCACCAGCCAGCC  650

seq1  ACCGGAAGGACTTTGGAGACACAGCATTTTTTTCTGTAGAACCTTTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGAAGGACTTTGGAGACACAGCATTTTTTTCTGTAGAACCTTTCAAT  700

seq1  GGGAAGAATGCTGAAATGTAC-TTTTTCTTCTTGGGAAAGCTCCAAGCTG  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGAAGAATGCTGAAATGTACTTTTTTCTTCTTGGGAAAGCTCCAAGCTG  750

seq1  GATGAATGATGTAGCTTGGTATTGTTA-TTTTTGTTTTTCACAGCTGCCC  798
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GATGAATGATGTAGCTTGGTATTGTTATTTTTTGTTTTTCACAGCTGCCC  800

seq1  AAATTACTGTGGTTCTCCTGGTCCATTCATGATATCCTTGTTTGAATGAA  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATTACTGTGGTTCTCCTGGTCCATTCATGATAT-CTTGTTTGAATGAA  849

seq1  TGTGCTAAAGATAGGAACTGCAGCTTCTTTGTTTGAATTGTCCTTTGTTT  898
      |||||| |||||||| |||||| |||||||||||||  ||||  ||||||
seq2  TGTGCT-AAGATAGGGACTGCA-CTTCTTTGTTTGATATGTC--TTGTTT  895

seq1  GAACGGGGGTGTTCATTTTAGCTTAGAGCAGCCTTGGCCACACATTTGCG  948
      ||  |||| ||||||||||||||||||||| |||| ||||  || |||| 
seq2  GACGGGGGTTGTTCATTTTAGCTTAGAGCATCCTT-GCCATCCA-TTGCT  943

seq1  CAAACCACAGACCCCCTAGTTAGGGAAGATCTCATTTAGT  988
      |||| ||| || ||||||| ||| ||||||||||||||||
seq2  CAAAGCACTGA-CCCCTAG-TAGTGAAGATCTCATTTAGT  981

seq1: chr1_155585440_155586012
seq2: B6Ng01-082M04.g_69_642 (reverse)

seq1  AGTTT-GGGAACAGTGGATCAGGTTGACTAACTGGGTCACCCTTCATAGG  49
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGGAACAGTGGATCAGGTTGACTAACTGGGTCACCCTTCATAGG  50

seq1  GTCTGGCTCAGTGAGGGGAGTCTACCTGAACTATTGTTCCAGATGTTTGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCTCAGTGAGGGGAGTCTACCTGAACTATTGTTCCAGATGTTTGG  100

seq1  TTTCGGACTGGACTGGACAGGCACAAGGGACTGAGGTGCAAATTTTTCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGACTGGACTGGACAGGCACAAGGGACTGAGGTGCAAATTTTTCAT  150

seq1  ATCAAAGCAGACCTGGCCTCTAGGTTCTCCCAGCATCCCTCAGTCTCACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCAGACCTGGCCTCTAGGTTCTCCCAGCATCCCTCAGTCTCACC  200

seq1  TGGCATACCCTGCCCCTAACCCTGAACTTTCAGCCCAGGGGCTGGGCTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACCCTGCCCCTAACCCTGAACTTTCAGCCCAGGGGCTGGGCTGC  250

seq1  CCTTCCCCCAATGCCTCTTCTCTATATAATCCAGGCATTTTGATCTCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCAATGCCTCTTCTCTATATAATCCAGGCATTTTGATCTCTTC  300

seq1  TTCTTCCTCTTCTTCCTCTTCCTCCTCCTCCTTCTCTCTCTGTGCATGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTCTTCTTCCTCTTCCTCCTCCTCCTTCTCTCTCTGTGCATGCA  350

seq1  CATTCTCAAGTGCCCTTTCTCTAGACAAGACCACTGAGCTGCATCTCCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCAAGTGCCCTTTCTCTAGACAAGACCACTGAGCTGCATCTCCAG  400

seq1  CCTCCTTCCTCGCCTCCCTTTCCTTTCCTCCTTCCCACTCCCTCCCATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCCTCGCCTCCCTTTCCTTTCCTCCTTCCCACTCCCTCCCATCT  450

seq1  TCCTTTCCCGACCTTTTACTTCACAGAGCATAGAGCAGTCCTTACTGCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCCGACCTTTTACTTCACAGAGCATAGAGCAGTCCTTACTGCTG  500

seq1  GAGAAGCCCCCTAGGAGATGGAATTCTGTATCCTGAAAGTGACAAAACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCCCCTAGGAGATGGAATTCTGTATCCTGAAAGTGACAAAACAT  550

seq1  TGTTTTCCTTACTGCATAGAATTC  573
      ||||||||||||||||||||||||
seq2  TGTTTTCCTTACTGCATAGAATTC  574