BAC Information

Click to search

BAC

Clone NameB6Ng01-083C11
Chromosome1 (Build37)
Map Location 50,772,306 - 50,889,414
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083C11.bB6Ng01-083C11.g
ACCDH897498DH897499
length1,1321,120
definitionDH897498|Mus musculus domesticus DNA, BAC clone: B6Ng01-083C11, 5' end.DH897499|Mus musculus domesticus DNA, BAC clone: B6Ng01-083C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,888,266 - 50,889,414)(50,772,306 - 50,773,454)
sequence
gaattctattcaagaatgatgagtagaaaagcaatgaaaatcaacctttg
aaggcaagcagcaaaccacttgattggagggggactgaaacccagaagat
gagcaatgtgaacagttcaagtaattcacaagcatttttatttcagtttc
aaacgttttcctactatgcctgtgttttatatagcatatataatgtcatt
cgcatgtaggaaaccccttctattgttcacttgaaactttttttttttta
taaatttaagaaacttagtctttaattcccgtaagatctgcgacctacat
ctttgaatacttccaagctggaaagatgtttcagttgctgatcttccaga
agactagaatttagttcctagcacccacattgggcagctcagagtggctt
ataatcataatttcagggactttgaaaccctcttcagactttcatgggca
tgtatgtgaatgtgtgtgcttaagtacacacacacacacacacacacaca
cacacacacatatatatgtagagagagtataaagaatgctctatatgata
attcatacttttttgaaacatgttgggatggcttagaggttaacagctct
tgctgacacttctgagaccctaggctcagttcccaacaatcacatggaag
ttcacaaccatatataactccaattccagataatctgatgccctcttctg
gcctttggagggcaccagacacacatggtctacaatcatacatatgggca
aaatacttatacacataaaataagacgactctaaagacacatgctttaaa
ttaagagatggcagctcactatttagtcctgtatgaccttgtatttgcta
tttagagcagattggcattaaagctgtgtcaattctcctgcaccagttaa
ccttgtactgaaaatttatagccctgtaccaccactggattataaattgt
tatattctagaattgcctttatcagtagctagatactaagataaaaaatg
tttattttgacacacaagtctgttaaaaactattaagatatgaattctta
atgcaattctccaggatttatgagggtttttttccctgagaattgattct
atggaacatagcactctgagacttttgattct
gaattctctttaaattggcagggacttcaggactctcatatgaacacagt
tcattagcaaacctcacttgttcatcacaaaaaggccaaaggtgaggaaa
attggatataatgccttcaattcgaaccagcctccaaagacacactcatg
attctctaatcactttggagcatgttaaaaagggtgctggataaatgata
aggattttaatcaaggtttagtctctgacagagcagaataatatatttga
tggataagaacctaaatctctcctgaccagtccttgattcccaccacatc
ttgcattcatgtgacagtgagagggaattaagtccagggtctgagcactt
catcagaaggctcctccaagttttccatgttgctttacatcacctaggga
tcaacacccatagaaataatagaatccatatataccatgttgttgtccag
ctctactaaagtagcattttatcttccattctccagggcgtaattcatac
tcaccttcaaaaatatgaatattggattctccagcaagatctagttcagg
gttttaagtcaggtgtaagcagcacacacacacaccaaaccaaagaagta
cacttcaaagttcatatatacttctataaaactacaattcaaaatcaatt
tacctgttcaaactagtgaaaaacattttcagtgatcatgatattgaact
gatgacctgaagtcattttcttaaagaagagaaagaatgttttttaaatt
aatgtccctttctctagatagttcaggactatagaaatattgtaacttgg
taatttacacaaaaacagaattaattttgtgtaaaatttagcttcataaa
gaaattattgtttcatataatcataggtgttctgttttaactcatttttt
taaaaaaaattgagctatgataatattctaaactaagtagccacactaaa
atagagtgttaaatatatttacttatatgtatactagtgaggtcactagt
gaatgcagaatttcatctttgaaattgagtgagattctcatctataggaa
ttatcagtgcatctaggcagtttcatgaaactaacgccaaactcgacaaa
ttatagtcataattctttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50888266_50889414
seq2: B6Ng01-083C11.b_44_1175 (reverse)

seq1  AGAATCATAAAGGTCTCAGGATGCTCATGTTCCACTAGGAAATC-ATACT  49
      ||||||  ||| |||||||  |||| |||||||| |||  |||| || ||
seq2  AGAATC--AAAAGTCTCAGAGTGCT-ATGTTCCA-TAG--AATCAATTCT  44

seq1  CAGGGAAAAAAAAAACCCTCATAAATCCTGGAAGAATTTGCATTATAGAA  99
      |||||   ||||||||||||||||||||||| |||| |||||||| ||||
seq2  CAGGG---AAAAAAACCCTCATAAATCCTGG-AGAA-TTGCATTA-AGAA  88

seq1  TTCAATATCTTAATAGTTTTTTAACAGACTTTGTGTGTCAAAATAAAACA  149
      ||| |||||||||||| |||||||||||| |||||||||||||| |||||
seq2  TTC-ATATCTTAATAG-TTTTTAACAGAC-TTGTGTGTCAAAAT-AAACA  134

seq1  TTATTTTATCTTAGTTATCTAGCTACTGATAAAGGCAATTCTAGAATATA  199
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TT-TTTTATCTTAG-TATCTAGCTACTGATAAAGGCAATTCTAGAATATA  182

seq1  ACAATTTATAATCCAGTGGTGGTACAGGGCTATAAATTTTCAGTACAAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTATAATCCAGTGGTGGTACAGGGCTATAAATTTTCAGTACAAGG  232

seq1  TTAACTGGTGCAGGAGAATTGACACAGCTTTAATGCCAATCTGCTCTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGGTGCAGGAGAATTGACACAGCTTTAATGCCAATCTGCTCTAAA  282

seq1  TAGCAAATACAAGGTCATACAGGACTAAATAGTGAGCTGCCATCTCTTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATACAAGGTCATACAGGACTAAATAGTGAGCTGCCATCTCTTAA  332

seq1  TTTAAAGCATGTGTCTTTAGAGTCGTCTTATTTTATGTGTATAAGTATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCATGTGTCTTTAGAGTCGTCTTATTTTATGTGTATAAGTATTT  382

seq1  TGCCCATATGTATGATTGTAGACCATGTGTGTCTGGTGCCCTCCAAAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATATGTATGATTGTAGACCATGTGTGTCTGGTGCCCTCCAAAGGC  432

seq1  CAGAAGAGGGCATCAGATTATCTGGAATTGGAGTTATATATGGTTGTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGGCATCAGATTATCTGGAATTGGAGTTATATATGGTTGTGAA  482

seq1  CTTCCATGTGATTGTTGGGAACTGAGCCTAGGGTCTCAGAAGTGTCAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGTGATTGTTGGGAACTGAGCCTAGGGTCTCAGAAGTGTCAGCA  532

seq1  AGAGCTGTTAACCTCTAAGCCATCCCAACATGTTTCAAAAAAGTATGAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTTAACCTCTAAGCCATCCCAACATGTTTCAAAAAAGTATGAAT  582

seq1  TATCATATAGAGCATTCTTTATACTCTCTCTACATATATATGTGTGTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATAGAGCATTCTTTATACTCTCTCTACATATATATGTGTGTGTG  632

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTACTTAAGCACACACATTCACATACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTACTTAAGCACACACATTCACATACA  682

seq1  TGCCCATGAAAGTCTGAAGAGGGTTTCAAAGTCCCTGAAATTATGATTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATGAAAGTCTGAAGAGGGTTTCAAAGTCCCTGAAATTATGATTAT  732

seq1  AAGCCACTCTGAGCTGCCCAATGTGGGTGCTAGGAACTAAATTCTAGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTCTGAGCTGCCCAATGTGGGTGCTAGGAACTAAATTCTAGTCT  782

seq1  TCTGGAAGATCAGCAACTGAAACATCTTTCCAGCTTGGAAGTATTCAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGATCAGCAACTGAAACATCTTTCCAGCTTGGAAGTATTCAAAG  832

seq1  ATGTAGGTCGCAGATCTTACGGGAATTAAAGACTAAGTTTCTTAAATTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGTCGCAGATCTTACGGGAATTAAAGACTAAGTTTCTTAAATTTA  882

seq1  TAAAAAAAAAAAAGTTTCAAGTGAACAATAGAAGGGGTTTCCTACATGCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAGTTTCAAGTGAACAATAGAAGGGGTTTCCTACATGCG  932

seq1  AATGACATTATATATGCTATATAAAACACAGGCATAGTAGGAAAACGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATTATATATGCTATATAAAACACAGGCATAGTAGGAAAACGTTT  982

seq1  GAAACTGAAATAAAAATGCTTGTGAATTACTTGAACTGTTCACATTGCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAAATAAAAATGCTTGTGAATTACTTGAACTGTTCACATTGCTC  1032

seq1  ATCTTCTGGGTTTCAGTCCCCCTCCAATCAAGTGGTTTGCTGCTTGCCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGGGTTTCAGTCCCCCTCCAATCAAGTGGTTTGCTGCTTGCCTT  1082

seq1  CAAAGGTTGATTTTCATTGCTTTTCTACTCATCATTCTTGAATAGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTGATTTTCATTGCTTTTCTACTCATCATTCTTGAATAGAATTC  1132

seq1: chr1_50772306_50773454
seq2: B6Ng01-083C11.g_67_1186

seq1  GAATTCTCTTTAAATTGGCAGGGACTTCAGGACTCTCATATGAACACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAAATTGGCAGGGACTTCAGGACTCTCATATGAACACAGT  50

seq1  TCATTAGCAAACCTCACTTGTTCATCACAAAAAGGCCAAAGGTGAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGCAAACCTCACTTGTTCATCACAAAAAGGCCAAAGGTGAGGAAA  100

seq1  ATTGGATATAATGCCTTCAATTCGAACCAGCCTCCAAAGACACACTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATATAATGCCTTCAATTCGAACCAGCCTCCAAAGACACACTCATG  150

seq1  ATTCTCTAATCACTTTGGAGCATGTTAAAAAGGGTGCTGGATAAATGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAATCACTTTGGAGCATGTTAAAAAGGGTGCTGGATAAATGATA  200

seq1  AGGATTTTAATCAAGGTTTAGTCTCTGACAGAGCAGAATAATATATTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTAATCAAGGTTTAGTCTCTGACAGAGCAGAATAATATATTTGA  250

seq1  TGGATAAGAACCTAAATCTCTCCTGACCAGTCCTTGATTCCCACCACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGAACCTAAATCTCTCCTGACCAGTCCTTGATTCCCACCACATC  300

seq1  TTGCATTCATGTGACAGTGAGAGGGAATTAAGTCCAGGGTCTGAGCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCATGTGACAGTGAGAGGGAATTAAGTCCAGGGTCTGAGCACTT  350

seq1  CATCAGAAGGCTCCTCCAAGTTTTCCATGTTGCTTTACATCACCTAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAGGCTCCTCCAAGTTTTCCATGTTGCTTTACATCACCTAGGGA  400

seq1  TCAACACCCATAGAAATAATAGAATCCATATATACCATGTTGTTGTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACCCATAGAAATAATAGAATCCATATATACCATGTTGTTGTCCAG  450

seq1  CTCTACTAAAGTAGCATTTTATCTTCCATTCTCCAGGGCGTAATTCATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTAAAGTAGCATTTTATCTTCCATTCTCCAGGGCGTAATTCATAC  500

seq1  TCACCTTCAAAAATATGAATATTGGATTCTCCAGCAAGATCTAGTTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCAAAAATATGAATATTGGATTCTCCAGCAAGATCTAGTTCAGG  550

seq1  GTTTTAAGTCAGGTGTAAGCAGCACACACACACACCAAACCAAAGAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAGTCAGGTGTAAGCAGCACACACACACACCAAACCAAAGAAGTA  600

seq1  CACTTCAAAGTTCATATATACTTCTATAAAACTACAATTCAAAATCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAAAGTTCATATATACTTCTATAAAACTACAATTCAAAATCAATT  650

seq1  TACCTGTTCAAACTAGTGAAAAACATTTTCAGTGATCATGATATTGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTTCAAACTAGTGAAAAACATTTTCAGTGATCATGATATTGAACT  700

seq1  GATGACCTGAAGTCATTTTCTTAAAGAAGAGAAAGAATGTTTTTTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCTGAAGTCATTTTCTTAAAGAAGAGAAAGAATGTTTTTTAAATT  750

seq1  AATGTCCCTTTCTCTAGATAGTTCAGGACTATAGAAATATTGTAACTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCCTTTCTCTAGATAGTTCAGGACTATAGAAATATTGTAACTTGG  800

seq1  TAATTTACACAAAAACAGAATTAATTTTGTGTAAAATTTAGCTTCAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAATTTACACAAAAACAGAATTAATTTTGTGTAAAATTTAGCTTC-ATAA  849

seq1  AGAAATTATTGTTTCATATAATCATAGGTGTTCTGTTTTAACTCATTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATTGTTTCATATAATCATAGGTGTTCTGTTTTAACTCATTTTT  899

seq1  TTAAAAAAAAATTGAGCTATGATAAATATTCTAAACTAAGTAGCCAACAC  950
      || |||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TT-AAAAAAAATTGAGCTATGAT-AATATTCTAAACTAAGTAGCC-ACAC  946

seq1  TAAAAATAGAAGTGTTAAATATATTTACTTATAATGTATACCTAGTGGAG  1000
      | ||||||| |||||||||||||||||||||| ||||||| ||||| |||
seq2  T-AAAATAG-AGTGTTAAATATATTTACTTAT-ATGTATA-CTAGT-GAG  991

seq1  GTCACTAAGTGAATGCAGAAATTTCATCTTTGAAAATTGAGTGAGAATTC  1050
      |||||| ||||||||||| ||||||||||||| |||||||||||| ||||
seq2  GTCACT-AGTGAATGCAG-AATTTCATCTTTG-AAATTGAGTGAG-ATTC  1037

seq1  TCATCTTTAAGAAATTTAATCAGTGCATCTTAGGGCAGTTTCTATGAAAC  1100
      |||||| || |||   | ||||||||||||   ||||||||| |||||| 
seq2  TCATCTATAGGAA---TTATCAGTGCATCT--AGGCAGTTTC-ATGAAA-  1080

seq1  CTAGACGCAAAACTCAAACAAAATTTAATAAGGTTCATAAATTCTTTGA  1149
      ||| |||| ||||||  ||||| | ||       |||| ||||||||||
seq2  CTA-ACGCCAAACTC-GACAAATTATA------GTCAT-AATTCTTTGA  1120