BAC Information

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BAC

Clone NameB6Ng01-083O22
Chromosome1 (Build37)
Map Location 39,697,882 - 39,865,985
singlet/doubletdoublet
Overlap geneCreg2, 4933400N17Rik, LOC100042065
Upstream geneAff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126
Downstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083O22.bB6Ng01-083O22.g
ACCDH898049DH898050
length1,141131
definitionDH898049|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O22, 5' end.DH898050|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,697,882 - 39,699,035)(39,865,855 - 39,865,985)
sequence
gaattctgttcagaatgctcctcggatgtcaaactctgcagctgcctaat
gctctctataaagtaaaagtattctattacaccttttatgtagtatatat
atatatatatatatatatatgtattgcatgtcatagcacatgtatggaca
taagagaacaacttggggagccagttctctatgccataaagctctcaggg
atcaactttaggtcttaagtcttagcctcaggcatccttatctgctaaac
tagctcagcttactaaaatagaagtattttagtagtaatatttgcatatc
atcccacactcccccgcagactttaaatcatctcaggtttcttttaacac
ctatttgatataaatactgtgcaaagaattgctgttctaaactgttcagg
ggataaaagctagaaaatatcagtttatcttccatagagacaaatttttt
ctgtagttgactgaatctgtggatggcactcaaagaagggcagtcttgct
gtaggatacatggcatcctaagtgcctgttctcacccagggttcactacg
gcgaggcctactcaaccacagactcaaaggcccttgaagttcaaccccac
attctcctgcataccaagggaaatctgaatatttaattttatcccagcag
caacattttggccacgaggatgcatcaaaatggccagtctagtgctaccc
ctatctagtactgaatgtcaccttaaataggtttatttattttttttatg
tatgtttttgcctgcatgcacgtgtactgcatgcatgcagcacctgcaaa
ggccagtagagggcatctgaatcctcggaactggagctacgcacacttgc
aagagcagccgtgctggcgctgagaatccatccagggtcctttgcaagag
cagctgtcctctaacgaccaaaccatctctcaagtcctggatgtcacttt
tgagagcaggtgaagcactttaaaccagtatgctctgggccaggacactt
tcacccagctgaccttagttactatactagacattagcacagagaacaac
agcactacaacacacaccatcacaatcagtaaaatctgactagtggaggt
ggcacgaccacaattcatttacaggtcacttataactctcg
tctactgttgttttaatgcttctgcctggaatggcagcctcaggggatgc
tggggtagcagagacctggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtttgtgttggggagatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_39697882_39699035
seq2: B6Ng01-083O22.b_46_1186

seq1  GAATTCTGTTCAGAATGCTCCTCGGATGTCAAACTCTGCAGCTGCCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCAGAATGCTCCTCGGATGTCAAACTCTGCAGCTGCCTAAT  50

seq1  GCTCTCTATAAAGTAAAAGTATTCTATTACACCTTTTATGTAGTATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTATAAAGTAAAAGTATTCTATTACACCTTTTATGTAGTATATAT  100

seq1  ATATATATATATATATATATGTATTGCATGTCATAGCACATGTATGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATGTATTGCATGTCATAGCACATGTATGGACA  150

seq1  TAAGAGAACAACTTGGGGAGCCAGTTCTCTATGCCATAAAGCTCTCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAACAACTTGGGGAGCCAGTTCTCTATGCCATAAAGCTCTCAGGG  200

seq1  ATCAACTTTAGGTCTTAAGTCTTAGCCTCAGGCATCCTTATCTGCTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTTAGGTCTTAAGTCTTAGCCTCAGGCATCCTTATCTGCTAAAC  250

seq1  TAGCTCAGCTTACTAAAATAGAAGTATTTTAGTAGTAATATTTGCATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAGCTTACTAAAATAGAAGTATTTTAGTAGTAATATTTGCATATC  300

seq1  ATCCCACACTCCCCCGCAGACTTTAAATCATCTCAGGTTTCTTTTAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACACTCCCCCGCAGACTTTAAATCATCTCAGGTTTCTTTTAACAC  350

seq1  CTATTTGATATAAATACTGTGCAAAGAATTGCTGTTCTAAACTGTTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGATATAAATACTGTGCAAAGAATTGCTGTTCTAAACTGTTCAGG  400

seq1  GGATAAAAGCTAGAAAATATCAGTTTATCTTCCATAGAGACAAATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAAGCTAGAAAATATCAGTTTATCTTCCATAGAGACAAATTTTTT  450

seq1  CTGTAGTTGACTGAATCTGTGGATGGCACTCAAAGAAGGGCAGTCTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTGACTGAATCTGTGGATGGCACTCAAAGAAGGGCAGTCTTGCT  500

seq1  GTAGGATACATGGCATCCTAAGTGCCTGTTCTCACCCAGGGTTCACTACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATACATGGCATCCTAAGTGCCTGTTCTCACCCAGGGTTCACTACG  550

seq1  GCGAGGCCTACTCAACCACAGACTCAAAGGCCCTTGAAGTTCAACCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGCCTACTCAACCACAGACTCAAAGGCCCTTGAAGTTCAACCCCAC  600

seq1  ATTCTCCTGCATACCAAGGGAAATCTGAATATTTAATTTTATCCCAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTGCATACCAAGGGAAATCTGAATATTTAATTTTATCCCAGCAG  650

seq1  CAACATTTTGGCCACGAGGATGCATCAAAATGGCCAGTCTAGTGCTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTTGGCCACGAGGATGCATCAAAATGGCCAGTCTAGTGCTACCC  700

seq1  CTATCTAGTACTGAATGTCACCTTAAATAGGTTTATTTA-TTTTTTTATG  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTATCTAGTACTGAATGTCACCTTAAATAGGTTTATTTATTTTTTTTATG  750

seq1  TATGTTTTTGCCTGCATGCACGTGTACTGCATGCATGCAGCACCTGCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTGCCTGCATGCACGTGTACTGCATGCATGCAGCACCTGCAAA  800

seq1  GGCCAGTAGAGGGCATCTGAATCCTCGGAACTGGAGCTACGCACACTTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTAGAGGGCATCTGAATCCTCGGAACTGGAGCTACGCACACTTGC  850

seq1  AAGAGCAGCCGTGCTGGCGCTGAGAATCCATCCAGGGTCCTTTGCAAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGCCGTGCTGGCGCTGAGAATCCATCCAGGGTCCTTTGCAAGAG  900

seq1  CAGGCTGTCCTCTTAACGACCAAACCATCTCTCAAGTCCTGGATGTCACT  949
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CA-GCTGTCCTC-TAACGACCAAACCATCTCTCAAGTCCTGGATGTCACT  948

seq1  TTTGAAGAGCAGGTGAAGCAC-TTAAACCAGTATGCCCT-GGCCAGGACA  997
      |||| |||||||||||||||| |||||||||||||| || ||||||||||
seq2  TTTG-AGAGCAGGTGAAGCACTTTAAACCAGTATGCTCTGGGCCAGGACA  997

seq1  ACTTCACCCAGCTGACCTTAGTAACTATACTAGAACATTAAGCAACAGAG  1047
        |||||||||||||||||||| |||||||||| ||||| ||| ||||||
seq2  CTTTCACCCAGCTGACCTTAGTTACTATACTAG-ACATT-AGC-ACAGAG  1044

seq1  AACAACAGCAACCACAACAACCACAACCACAACAAATCAGTAAAACATCT  1097
      ||||||||| || ||||||  ||| | |||    ||||||||||  ||||
seq2  AACAACAGC-ACTACAACACACACCATCAC----AATCAGTAAA--ATCT  1087

seq1  GACTAGGTGAGGTGGCAC-AGCACAAATTCATTTTACAAGTTCACTTATA  1146
      ||||||  |||||||||| | ||| |||||| ||||| || |||||||| 
seq2  GACTAGTGGAGGTGGCACGACCAC-AATTCA-TTTAC-AGGTCACTTAT-  1133

seq1  AACTCTCG  1154
      ||||||||
seq2  AACTCTCG  1141

seq1: chr1_39865855_39865985
seq2: B6Ng01-083O22.g_72_202 (reverse)

seq1  ACATCTCCCCAACACACACACACACACACACACACACACACACACACACA  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACATCTCCCCAACACAAACACACACACACACACACACACACACACACACA  50

seq1  CACACACACACGCCAGGTCTCTGCTACCCCAGCATCCCCTGAGGCTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACGCCAGGTCTCTGCTACCCCAGCATCCCCTGAGGCTGCCA  100

seq1  TTCCAGGCAGAAGCATTAAAACAACAGTAGA  131
      |||||||||||||||||||||||||||||||
seq2  TTCCAGGCAGAAGCATTAAAACAACAGTAGA  131