BAC Information

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BAC

Clone NameB6Ng01-084A20
Chromosome1 (Build37)
Map Location 181,105,531 - 181,238,010
singlet/doubletdoublet
Overlap geneSmyd3
Upstream gene5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, LOC666354
Downstream geneLOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084A20.bB6Ng01-084A20.g
ACCDH898130DH898131
length1,224301
definitionDH898130|Mus musculus domesticus DNA, BAC clone: B6Ng01-084A20, 5' end.DH898131|Mus musculus domesticus DNA, BAC clone: B6Ng01-084A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,105,531 - 181,106,776)(181,237,710 - 181,238,010)
sequence
gaattcatgcactttccatggtactgctaaaatggcagacagaagtcctg
atgtgccaatacatgagtgtgaccatggaaaacaatgtgctagaacaaag
caaaatagcttaagccatggactggagagatggctcagtggttaaaagtg
tgctcatatacatataaccattgtcgtcgtcgtcatcatcatcgtctttt
taaaaagttttagccataaagacatgttaaacacttgcactgtggaagca
gaggcaggtggatctctacgagtgcaagacccgtctggtctacataagga
gtttaaaaaaaaaaacaaaacaaaaaccatttggggaactagataggact
aaccagaatcaagaattacacgacgaatatatcaaaacatgttagttcta
agtgtttatgtaccagttaaactaaatttaattcaaagagggaacctcat
ctcagtctgtaaattcctaacttcagctgaagcaagacatgcgtggcttc
agttgacagacgtttcaaatcaaaagactattcaacagtaattgaatctt
tgtccatgtaggcagtgctcaattatctatccataagtaaggacttaact
ctatgaactaactccggaatagccatctaggatggcatcttaggttaaaa
atatctcctccttatcctgcaagaagagagtgagagtgaacacacacaca
cacacacacacacacacacacacacacacacacacacacacacatcatat
cattcacaaatgccttaagctgtttccagagctcctttcctccctctttt
ggcaaacaatttccttttatatcttcaagactaagtcagtacttaaaagc
cttcctgtactaactccatgcttgcctctcccaccccccatccccacctc
cactccgggaaactgaaagttgctctctcaagctcgtgaccgcatattct
ccctggattttgtctattggaccaaggtgttgggttttgtggaggctatt
tccagttcttgaacggagattattctcttgacacttaattatatatttga
tgaataaggaaacgtccttaggagccgagtttctgacatgatttccaaaa
gcatgcagaactttctatttccaccctttttgttttgaattagttgaaca
gtttcactgtggacctggatcactcagctgcttggcgaccttggaataag
ggatgcaccacggagcacctctct
tttaaccccctttaaagttactgagaaatcgcagagcagctctgtgggga
ggggtcacagttcatgtttcctttccttttctagaaacatttactaaaaa
ttctaattatctgtcactttcagattaaaagagaaaccacacacagcctc
atctgtgtaaatatatatacatagattaaaatccttatgatactgaaaaa
aaattgtataagtccttattttcccaagagaaaacttctgttttttccga
ttgcttttggatacatttttcttccttccttccttccttccttccttcct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_181105531_181106776
seq2: B6Ng01-084A20.b_43_1266

seq1  GAATTCATGCACTTTCCATGGTACTGCTAAAATGGCAGACAGAAGTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCACTTTCCATGGTACTGCTAAAATGGCAGACAGAAGTCCTG  50

seq1  ATGTGCCAATACATGAGTGTGACCATGGAAAACAATGTGCTAGAACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCAATACATGAGTGTGACCATGGAAAACAATGTGCTAGAACAAAG  100

seq1  CAAAATAGCTTAAGCCATGGACTGGAGAGATGGCTCAGTGGTTAAAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGCTTAAGCCATGGACTGGAGAGATGGCTCAGTGGTTAAAAGTG  150

seq1  TGCTCATATACATATAACCATTGTCGTCGTCGTCATCATCATCGTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATATACATATAACCATTGTCGTCGTCGTCATCATCATCGTCTTTT  200

seq1  TAAAAAGTTTTAGCCATAAAGACATGTTAAACACTTGCACTGTGGAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTTTTAGCCATAAAGACATGTTAAACACTTGCACTGTGGAAGCA  250

seq1  GAGGCAGGTGGATCTCTACGAGTGCAAGACCCGTCTGGTCTACATAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTGGATCTCTACGAGTGCAAGACCCGTCTGGTCTACATAAGGA  300

seq1  GTTTAAAAAAAAAAACAAAACAAAAACCATTTGGGGAACTAGATAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAAAAAAAACAAAACAAAAACCATTTGGGGAACTAGATAGGACT  350

seq1  AACCAGAATCAAGAATTACACGACGAATATATCAAAACATGTTAGTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAATCAAGAATTACACGACGAATATATCAAAACATGTTAGTTCTA  400

seq1  AGTGTTTATGTACCAGTTAAACTAAATTTAATTCAAAGAGGGAACCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTATGTACCAGTTAAACTAAATTTAATTCAAAGAGGGAACCTCAT  450

seq1  CTCAGTCTGTAAATTCCTAACTTCAGCTGAAGCAAGACATGCGTGGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTGTAAATTCCTAACTTCAGCTGAAGCAAGACATGCGTGGCTTC  500

seq1  AGTTGACAGACGTTTCAAATCAAAAGACTATTCAACAGTAATTGAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACAGACGTTTCAAATCAAAAGACTATTCAACAGTAATTGAATCTT  550

seq1  TGTCCATGTAGGCAGTGCTCAATTATCTATCCATAAGTAAGGACTTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGTAGGCAGTGCTCAATTATCTATCCATAAGTAAGGACTTAACT  600

seq1  CTATGAACTAACTCCGGAATAGCCATCTAGGATGGCATCTTAGGTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACTAACTCCGGAATAGCCATCTAGGATGGCATCTTAGGTTAAAA  650

seq1  ATATCTCCTCCTTATCCTGCAAGAAGAGAGTGAGAGTGAACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCTCCTTATCCTGCAAGAAGAGAGTGAGAGTGAACACACACACA  700

seq1  CACACACACACACACACACACACACACACACACACACACACACATCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACATCATAT  750

seq1  CATTCACAAATGCCTTAAGCTGTTTCCAGAGCTCCTTTCCTCCCTCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAAATGCCTTAAGCTGTTTCCAGAGCTCCTTTCCTCCCTCTTTT  800

seq1  GGCAAACAATTTCC-TTTATATCTTCAAGACTAAGTCAGTACTTAAAAGC  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCAAACAATTTCCTTTTATATCTTCAAGACTAAGTCAGTACTTAAAAGC  850

seq1  CTTCCTGTACTAACTCCATGCTTGCCTCTCCCA-CCCCCATCCCCACCTC  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTCCTGTACTAACTCCATGCTTGCCTCTCCCACCCCCCATCCCCACCTC  900

seq1  CACTCCGGGAAACTGAAAGTTGCTCTCTCAAGCTCGTGACCGCATATTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCGGGAAACTGAAAGTTGCTCTCTCAAGCTCGTGACCGCATATTCT  950

seq1  CCCTGGAATTTTGTCTATTGGACCAAGGGTGTTTGGTTTTGTGGAGGCTA  998
      |||||| ||||||||||||||||||| |||||| ||||||||||||||||
seq2  CCCTGG-ATTTTGTCTATTGGACCAA-GGTGTTGGGTTTTGTGGAGGCTA  998

seq1  TTTCCAGTTCTTTGAACGGAGATTATTCTCTTGACACTTAATTAATATAT  1048
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  TTTCCAGTTC-TTGAACGGAGATTATTCTCTTGACACTTAATT-ATATAT  1046

seq1  TTGATGGAATAAAGGAAACGTCCTAAGAGCCCGAGTTTCTGAACATGATT  1098
      ||||| |||| ||||||||||||| ||   ||||||||||| ||||||||
seq2  TTGAT-GAAT-AAGGAAACGTCCTTAGGAGCCGAGTTTCTG-ACATGATT  1093

seq1  TCCAAAAGCATGCAGGGAACTTTCTATTTTTCACACCTTTTTGTTTTGGA  1148
      ||||||||||||||  |||||||||| ||| ||| |||||||||||| ||
seq2  TCCAAAAGCATGCA--GAACTTTCTA-TTTCCAC-CCTTTTTGTTTT-GA  1138

seq1  TTTAGTTTTGAGACAAGGTCTCACTGTGTAGTCCTGATTCACTCAGCTTT  1198
       ||||  |||| |||  || ||||||||  | ||||  |||||||||  |
seq2  ATTAG--TTGA-ACA--GTTTCACTGTG--GACCTGGATCACTCAGC--T  1179

seq1  GCCTTGGGAGCCCTGGGATTAAGGGGATGCACCACAGAGCACCTCTCT  1246
      ||  | || | ||| ||| ||| |||||||||||| ||||||||||||
seq2  GC--TTGGCGACCTTGGAATAA-GGGATGCACCACGGAGCACCTCTCT  1224

seq1: chr1_181237710_181238010
seq2: B6Ng01-084A20.g_71_371 (reverse)

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAATGTATCCAAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAATGTATCCAAAAGCA  50

seq1  ATCGGAAAAAACAGAAGTTTTCTCTTGGGAAAATAAGGACTTATACAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGAAAAAACAGAAGTTTTCTCTTGGGAAAATAAGGACTTATACAATT  100

seq1  TTTTTTCAGTATCATAAGGATTTTAATCTATGTATATATATTTACACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGTATCATAAGGATTTTAATCTATGTATATATATTTACACAGA  150

seq1  TGAGGCTGTGTGTGGTTTCTCTTTTAATCTGAAAGTGACAGATAATTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGTGTGTGGTTTCTCTTTTAATCTGAAAGTGACAGATAATTAGA  200

seq1  ATTTTTAGTAAATGTTTCTAGAAAAGGAAAGGAAACATGAACTGTGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGTAAATGTTTCTAGAAAAGGAAAGGAAACATGAACTGTGACCC  250

seq1  CTCCCCACAGAGCTGCTCTGCGATTTCTCAGTAACTTTAAAGGGGGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACAGAGCTGCTCTGCGATTTCTCAGTAACTTTAAAGGGGGTTAA  300

seq1  A  301
      |
seq2  A  301