BAC Information

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BAC

Clone NameB6Ng01-084B17
Chromosome1 (Build37)
Map Location 176,262,633 - 176,387,854
singlet/doubletdoublet
Overlap gene1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
Upstream geneDarc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419
Downstream geneFmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084B17.bB6Ng01-084B17.g
ACCDH898172DH898173
length1,0401,015
definitionDH898172|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B17, 5' end.DH898173|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,387,271 - 176,387,854)(176,262,633 - 176,263,650)
sequence
gaattctgcacagtggctgcttctaatagttactcctctttccctgagag
ctatctttaagcctttgatgaaggctgcctctttagtcaaagtcctcgag
aggagggtaaattgacttaattttttgttcttcattttttatattatcct
ttatatctttatattatcctttgtatctttacattttatattatcctttg
tatctttatattttagcttcctttctttttctctttttatatttcttaag
ttacttatttttctgcgcgcgtcttcttttttctttctctctgtttctga
tatgccttcctggtactcctacaaagtcgctgcccttccttaacagctgg
tcccacacaaacccagcaacaactaccagacccactgcgtaagaaagcat
acctctcagagacttaccttaatttctttatacttaccggtaccaccgtt
cctcagctgaagagttctgaatccacgcagttgaatccttctcagcagtc
tgttttgcaggaacctttattaacaccgctccccagctgaagagttctga
atccacgccggatccttctcagcagtctgttttacgggaacctttattaa
ccgctccttccccgcgatgcagttctgaatcctccctgtagtagggggtc
ttcgctcgtgcctgaagatgtttcttgtcccgggttttcggcaccacttc
ttgcgcgcgctcgactcgaccagcaagaacgacgctgcaacaggatcctt
ctgcacacgtttatttggagagcttgattgcagaggcgaaaagacttttt
gcccagagctggtgctgcttttataggcctaggagaggcgtgtctcatac
cctgattggttatgcactaagcctcatttgcatgttcctcatctgattgg
ctactctctctcagtacctcacagagcctcattatcatacctcatttgca
tgtctcacatctgattggttatactctcagtaccttacagaacctcatta
tcatgcctgggccaggcagtgttttttgcaaaaaacttta
gaattctggctgaatggaaaaccactggggaggaaaggcttgaagaaggg
atacactgtggggggtgatgcaatgatcactctaggacaagagcaggatt
cctatgggggaaattttgatgcaaagcaatcctttgttggggagatatgg
gatgtttccttgtgggaccatgtggtccccctagaaaaggtatcagacag
ctgtaacaatggcaaccttataaactggcaagctcttaattatgaagaca
atggctatgtggtgactaagcccaaactgtggccttaagctaattgctct
atgaaatataagtctgcttttggttctgttaaaatgataatgtgcattgc
attaaaaaagcaaagaaatgagcatcattactgtgtgttatttatggttg
tacatattggggtgaactgtaccgtaattgtctacagcatcaaaccatag
gaactaggggaacacctagagaactcctctctcaactgggcacccaagtt
ggaggattctgtgtgactggaggagaccctgtggtggttctgtgtgctca
aattcagaaacctgtgagcacaatgtgactgctgggagaggccttcagga
acagactatccgagggggtcagacctcaaaagagagtttaaaaagaggat
ttctcaggagcagggttgagaaaatgcccgttcacctacacagaaaagaa
tgaaagctatttgcaaaggtatgtttagggaaaccccaaaatagacaaag
accagctgtgctgaaggtttcttcacactcactcttatcttccctgggaa
gtagctgttctaggataagcatgcatgttcccttcttacccctcctactg
ttaaacccaagaatcagaagagaaagaccaggtccaccatttttgagcca
aagttgaagaagcttttattaatactggccaggaggattgtatctggtca
ggacattctgggattcctggcaaatggcatgagtcacatttttgcaggag
tatattataagacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_176387271_176387854
seq2: B6Ng01-084B17.b_42_625 (reverse)

seq1  TAAAACAGACTGCTGAGAAGGATCCGGCGTGGATTCAGAACTCTTCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGACTGCTGAGAAGGATCCGGCGTGGATTCAGAACTCTTCAGCT  50

seq1  GGGGAGCGGTGTTAATAAAGGTTCCTGCAAAACAGACTGCTGAGAAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCGGTGTTAATAAAGGTTCCTGCAAAACAGACTGCTGAGAAGGAT  100

seq1  TCAACTGCGTGGATTCAGAACTCTTCAGCTGAGGAACGGTGGTACCGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGCGTGGATTCAGAACTCTTCAGCTGAGGAACGGTGGTACCGGTA  150

seq1  AGTATAAAGAAATTAAGGTAAGTCTCTGAGAGGTATGCTTTCTTACGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAGAAATTAAGGTAAGTCTCTGAGAGGTATGCTTTCTTACGCAG  200

seq1  TGGGTCTGGTAGTTGTTGCTGGGTTTGTGTGGGACCAGCTGTTAAGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTGGTAGTTGTTGCTGGGTTTGTGTGGGACCAGCTGTTAAGGAAG  250

seq1  GGCAGCGACTTTGTAGGAGTACCAGGAAGGCATATCAGAAACAGAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCGACTTTGTAGGAGTACCAGGAAGGCATATCAGAAACAGAGAGAA  300

seq1  AGAAAAAAGAAGACGCGCGCAGAAAAATAAGTAACTTAAGAAATATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAGAAGACGCGCGCAGAAAAATAAGTAACTTAAGAAATATAAAA  350

seq1  AGAGAAAAAGAAAGGAAGCTAAAATATAAAGATACAAAGGATAATATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAGAAAGGAAGCTAAAATATAAAGATACAAAGGATAATATAAA  400

seq1  ATGTAAAGATACAAAGGATAATATAAAGATATAAAGGATAATATAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGATACAAAGGATAATATAAAGATATAAAGGATAATATAAAAAA  450

seq1  TGAAGAACAAAAAATTAAGTCAATTTACCCTCCTCTCGAGGACTTTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACAAAAAATTAAGTCAATTTACCCTCCTCTCGAGGACTTTGACT  500

seq1  AAAGAGGCAGCCTTCATCAAAGGCTTAAAGATAGCTCTCAGGGAAAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCAGCCTTCATCAAAGGCTTAAAGATAGCTCTCAGGGAAAGAGG  550

seq1  AGTAACTATTAGAAGCAGCCACTGTGCAGAATTC  584
      ||||||||||||||||||||||||||||||||||
seq2  AGTAACTATTAGAAGCAGCCACTGTGCAGAATTC  584

seq1: chr1_176262633_176263650
seq2: B6Ng01-084B17.g_69_1083

seq1  GAATTCTGGCTGAATGGAAAACCACTGGGGAGGAAAGGCTTGAAGAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTGAATGGAAAACCACTGGGGAGGAAAGGCTTGAAGAAGGG  50

seq1  ATACACTGTGGGGGGTGATGCAATGATCACTCTAGGACAAGAGCAGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTGTGGGGGGTGATGCAATGATCACTCTAGGACAAGAGCAGGATT  100

seq1  CCTATGGGGGAAATTTTGATGCAAAGCAATCCTTTGTTGGGGAGATATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGGGGAAATTTTGATGCAAAGCAATCCTTTGTTGGGGAGATATGG  150

seq1  GATGTTTCCTTGTGGGACCATGTGGTCCCCCTAGAAAAGGTATCAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCCTTGTGGGACCATGTGGTCCCCCTAGAAAAGGTATCAGACAG  200

seq1  CTGTAACAATGGCAACCTTATAAACTGGCAAGCTCTTAATTATGAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACAATGGCAACCTTATAAACTGGCAAGCTCTTAATTATGAAGACA  250

seq1  ATGGCTATGTGGTGACTAAGCCCAAACTGTGGCCTTAAGCTAATTGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTATGTGGTGACTAAGCCCAAACTGTGGCCTTAAGCTAATTGCTCT  300

seq1  ATGAAATATAAGTCTGCTTTTGGTTCTGTTAAAATGATAATGTGCATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATATAAGTCTGCTTTTGGTTCTGTTAAAATGATAATGTGCATTGC  350

seq1  ATTAAAAAAGCAAAGAAATGAGCATCATTACTGTGTGTTATTTATGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAGCAAAGAAATGAGCATCATTACTGTGTGTTATTTATGGTTG  400

seq1  TACATATTGGGGTGAACTGTACCGTAATTGTCTACAGCATCAAACCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTGGGGTGAACTGTACCGTAATTGTCTACAGCATCAAACCATAG  450

seq1  GAACTAGGGGAACACCTAGAGAACTCCTCTCTCAACTGGGCACCCAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGGGGAACACCTAGAGAACTCCTCTCTCAACTGGGCACCCAAGTT  500

seq1  GGAGGATTCTGTGTGACTGGAGGAGACCCTGTGGTGGTTCTGTGTGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTCTGTGTGACTGGAGGAGACCCTGTGGTGGTTCTGTGTGCTCA  550

seq1  AATTCAGAAACCTGTGAGCACAATGTGACTGCTGGGAGAGGCCTTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAAACCTGTGAGCACAATGTGACTGCTGGGAGAGGCCTTCAGGA  600

seq1  ACAGACTATCCGAGGGGGTCAGACCTCAAAAGAGAGTTTAAAAAGAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTATCCGAGGGGGTCAGACCTCAAAAGAGAGTTTAAAAAGAGGAT  650

seq1  TTCTCAGGAGCAGGGTTGAGAAAATGCCCGTTCACCTACACAGAAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGAGCAGGGTTGAGAAAATGCCCGTTCACCTACACAGAAAAGAA  700

seq1  TGAAAGCTATTTGCAAAGGTATGTTTAGGGAAACCCCAAAATAGACAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTATTTGCAAAGGTATGTTTAGGGAAACCCCAAAATAGACAAAG  750

seq1  ACCAGCTGTGCTGAAGGTTTCTTCACACTCACTCTTATCTTCCCTGGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTGTGCTGAAGGTTTCTTCACACTCACTCTTATCTTCCCTGGGAA  800

seq1  GTAGCTGTTCTAGGATAAGCATGCATGTT-CCTTCTAGCCCCTCCTACTG  849
      ||||||||||||||||||||||||||||| ||||||  ||||||||||||
seq2  GTAGCTGTTCTAGGATAAGCATGCATGTTCCCTTCTTACCCCTCCTACTG  850

seq1  TTAAACCCAAGAATCAGAAGAGAAAGACCAGTTCCACCATTTTTGAGCCA  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTAAACCCAAGAATCAGAAGAGAAAGACCAGGTCCACCATTTTTGAGCCA  900

seq1  AAGTTGAAGGAAGCTTTAATTAAATACTGGCCAGGAGGATGGATTCTGGT  949
      |||||||| |||||||| ||| |||||||||||||||||| |  ||||||
seq2  AAGTTGAA-GAAGCTTTTATT-AATACTGGCCAGGAGGATTGTATCTGGT  948

seq1  CAGGACCATTCTGGGATTCCTGGCAAATGGCAATGAGTCACA-TTTTGCA  998
      ||||| ||||||||||||||||||||||||| |||||||||| |||||||
seq2  CAGGA-CATTCTGGGATTCCTGGCAAATGGC-ATGAGTCACATTTTTGCA  996

seq1  GAGGTTAATTATAAAGACAA  1018
      |  ||  ||||| |||||||
seq2  GGAGTATATTAT-AAGACAA  1015