BAC Information

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BAC

Clone NameB6Ng01-084I11
Chromosome1 (Build37)
Map Location 58,225,961 - 58,446,583
singlet/doubletdoublet
Overlap geneAox3, Aox4, Aox3l1, EG628262
Upstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1
Downstream geneBzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084I11.bB6Ng01-084I11.g
ACCDH898457DH898458
length1,210939
definitionDH898457|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I11, 5' end.DH898458|Mus musculus domesticus DNA, BAC clone: B6Ng01-084I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,445,358 - 58,446,583)(58,225,961 - 58,226,903)
sequence
gaattccatgattctttgctttatcactgtcactaccaactatagacgga
aatagtcacaattagccacgcgtagtagaacacaactctaataccagtac
tcagaaggcagagtcaagcagagctctgtgattttgaagccagcttgttc
tacatactgagttccaggacagcaagagctatatatagtgagaccctgtc
tcaaaacagcaaaacagaaacctccacaatctagcaccaaaacaaacctt
tcttcatgacttgacatttgttacagtaacagaaagctgacataagacag
taacagtgctgttgcttacatcatttatcactgctaccacttggcctaat
aatcagactcacaatagatcttacatctggagaggaagtaatttcttctg
aattagtttcacatatatcatattctttttagtgcaacttgtgtgtagag
ctgtcactgaatgaaataactacagtgtagttgatcactactgttctaaa
agaagctcatggactcccattaagtaaattcaatgccaatttatctgatg
aaagagagcagaaatatttgagggtctgttagtttacactgagtcttatt
atgtagcccaaacaggcctcaaactcatagtgaccctctgcttcagcctc
cgagtgtgctgggattccaggcttgtactaccactcctggtctgagtccc
acttattttaataataataataataaaatgtggctttctgctggtgatga
cgagaacttgcctcctgcacaggatctccttcatccctctccagaagaga
agagaagaaacatgggaaatgccaggtacaggaccctgctttccgcttca
ttcatgggtgagaaatgcctgggttctataaaatccccatggtcttcagc
ctacctacaaaaggtagccttgtgtagggctgctcctgtgtcttctgcag
cctaaggaggaaagcaaggcttgggaagtgtcagaagacatcccagtcaa
cattttggataaaaataaatgtgtgagcgagccattgtgcatgccctgtg
atccatggtgcttgcatccaccacatgccttatgaagtcagaagacaact
tcagggttgctttctcttttttccacgtgggcttaaaacaaggtacctgt
ataggcacagcttgatcctggggtctgtactgaaaactattaaactgttt
tggggctagg
gaattccaactgcagtcacctggaaatgaaaattaaggcttagccgaatg
agcacttattaaaaggagagaattagaacctagacattttgtaaaagaaa
aaaataagtggtgtgacttaacgtgaatgggtatttgaatagagaatgca
aggaattaaggaataaagttggacttgcatatcaacgagacaatgacacc
actaacattaatggagtgtggttacaagggggataatacagggcacacac
acacacacacacacacacacacacacacacacacacgtctcctttggttt
taagttccccaaattactctgggtgtggggggctggggggacgggaatct
aattcacagctcttaaccttttctaaaactttggagtccaatctgtagca
gccacaggcaggcttgcctgtgacaccagagaggaactccctcccttcct
gtaaacaaacgaacaaatgaacaaacatcttaagccttcaggaagtttcc
cagccacaccattcaccagggaacagcaaaaacctccccactcccttctc
tctcctgagtggctgcactctgattctttctcctttgcctgattgaatga
cagcaaacctgaactcactcgaatctcacatctgttacaattggaatctt
ttcttttctaggaccggccgcccaatacgtttcattctagagcgtaggga
tgacatgttgataactggaggacgtcacccactactcgggaaatacaagg
tgagtgggtggccacgtccctgcacagacgccactccaggggcctgtgtc
ttgcagctccagtccttggagctctctgctcccccgtgcagtggttggtg
tgcatgcttggtcttaccaagcctcagtatcaccagcgtgacctgtgagt
actgctcatagaagaaaaagagatacttatacagagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58445358_58446583
seq2: B6Ng01-084I11.b_42_1251 (reverse)

seq1  CCTAGCCCCCCAAAACAGTTTAATATGCTTTCTGAGT-CAGACCCCAGGA  49
      |||||  |||||||||||||||||| | ||||  ||| ||||||||||||
seq2  CCTAG--CCCCAAAACAGTTTAATA-GTTTTC--AGTACAGACCCCAGGA  45

seq1  CTCAGCTGTTGCTATACCAGGGTAACCTGGTTTTTAGAGCCCACGGTGGA  99
         ||||||  ||||| ||||   |||| |||||   ||||||||  | |
seq2  TCAAGCTGTGCCTATA-CAGG--TACCTTGTTTT--AAGCCCACGTGGAA  90

seq1  AAAAGAG-AAGCAACTCCTGAAAGTTGTCTTCTGACTTCTATAA-GCATG  147
      ||||||| ||||||| |||| |||||||||||||||||| |||| |||||
seq2  AAAAGAGAAAGCAAC-CCTG-AAGTTGTCTTCTGACTTC-ATAAGGCATG  137

seq1  TGGTGGCATGCAAGCACATGGGATCACACGCGCATGCACATGGGCTCGCT  197
      |||||| ||||||||||   |||||||| | |||||||||  ||||||||
seq2  TGGTGG-ATGCAAGCACCATGGATCACA-GGGCATGCACAATGGCTCGCT  185

seq1  CACACATTTTATTTTTATCCAAAATGTTGACTGGGATGTCTTCTGACACC  247
      |||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  CACACA-TTTATTTTTATCCAAAATGTTGACTGGGATGTCTTCTGACA-C  233

seq1  TTCCCAAGCCTTGCTTTTCCTCCTTAGGCTGCAGAAGACACAGGAGCAGC  297
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  TTCCCAAGCCTTGC-TTTCCTCCTTAGGCTGCAGAAGACACAGGAGCAG-  281

seq1  CCCTACACAAGGCTACCTTTTGTAGGTAGGCTGAAGACCATGGGGATTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACACAAGGCTACCTTTTGTAGGTAGGCTGAAGACCATGGGGATTTT  331

seq1  ATAGAACCCAGGCATTTCTCACCCATGAATGAAGCGGGAAGCAGGGTCCT  397
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATAGAACCCAGGCATTTCTCACCCATGAATGAAGCGGAAAGCAGGGTCCT  381

seq1  GTACCTGGCATTTCCCATGTTTCTTCTCTTCTCTTCTGGAGAGGGATGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGGCATTTCCCATGTTTCTTCTCTTCTCTTCTGGAGAGGGATGAA  431

seq1  GGAGATCCTGTGCAGGAGGCAAGTTCTCGTCATCACCAGCAGAAAGCCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCCTGTGCAGGAGGCAAGTTCTCGTCATCACCAGCAGAAAGCCAC  481

seq1  ATTTTATTATTATTATTATTAAAATAAGTGGGACTCAGACCAGGAGTGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTATTATTATTATTAAAATAAGTGGGACTCAGACCAGGAGTGGT  531

seq1  AGTACAAGCCTGGAATCCCAGCACACTCGGAGGCTGAAGCAGAGGGTCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGCCTGGAATCCCAGCACACTCGGAGGCTGAAGCAGAGGGTCAC  581

seq1  TATGAGTTTGAGGCCTGTTTGGGCTACATAATAAGACTCAGTGTAAACTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTTGAGGCCTGTTTGGGCTACATAATAAGACTCAGTGTAAACTA  631

seq1  ACAGACCCTCAAATATTTCTGCTCTCTTTCATCAGATAAATTGGCATTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCTCAAATATTTCTGCTCTCTTTCATCAGATAAATTGGCATTGA  681

seq1  ATTTACTTAATGGGAGTCCATGAGCTTCTTTTAGAACAGTAGTGATCAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTAATGGGAGTCCATGAGCTTCTTTTAGAACAGTAGTGATCAAC  731

seq1  TACACTGTAGTTATTTCATTCAGTGACAGCTCTACACACAAGTTGCACTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTAGTTATTTCATTCAGTGACAGCTCTACACACAAGTTGCACTA  781

seq1  AAAAGAATATGATATATGTGAAACTAATTCAGAAGAAATTACTTCCTCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATATGATATATGTGAAACTAATTCAGAAGAAATTACTTCCTCTC  831

seq1  CAGATGTAAGATCTATTGTGAGTCTGATTATTAGGCCAAGTGGTAGCAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTAAGATCTATTGTGAGTCTGATTATTAGGCCAAGTGGTAGCAGT  881

seq1  GATAAATGATGTAAGCAACAGCACTGTTACTGTCTTATGTCAGCTTTCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGATGTAAGCAACAGCACTGTTACTGTCTTATGTCAGCTTTCTG  931

seq1  TTACTGTAACAAATGTCAAGTCATGAAGAAAGGTTTGTTTTGGTGCTAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTAACAAATGTCAAGTCATGAAGAAAGGTTTGTTTTGGTGCTAGA  981

seq1  TTGTGGAGGTTTCTGTTTTGCTGTTTTGAGACAGGGTCTCACTATATATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAGGTTTCTGTTTTGCTGTTTTGAGACAGGGTCTCACTATATATA  1031

seq1  GCTCTTGCTGTCCTGGAACTCAGTATGTAGAACAAGCTGGCTTCAAAATC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGCTGTCCTGGAACTCAGTATGTAGAACAAGCTGGCTTCAAAATC  1081

seq1  ACAGAGCTCTGCTTGACTCTGCCTTCTGAGTACTGGTATTAGAGTTGTGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTCTGCTTGACTCTGCCTTCTGAGTACTGGTATTAGAGTTGTGT  1131

seq1  TCTACTACGCGTGGCTAATTGTGACTATTTCCGTCTATAGTTGGTAGAGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTACTACGCGTGGCTAATTGTGACTATTTCCGTCTATAGTTGGTAGTGA  1181

seq1  CAGTGATAAAGCAAAGAATCATGGAATTC  1226
      |||||||||||||||||||||||||||||
seq2  CAGTGATAAAGCAAAGAATCATGGAATTC  1210

seq1: chr1_58225961_58226903
seq2: B6Ng01-084I11.g_68_1006

seq1  GAATTCCAACTGCAGTCACCTGGAAATGAAAATTAAGGCTTAGCCGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTGCAGTCACCTGGAAATGAAAATTAAGGCTTAGCCGAATG  50

seq1  AGCACTTATTAAAAGGAGAGAATTAGAACCTAGACATTTTGTAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTATTAAAAGGAGAGAATTAGAACCTAGACATTTTGTAAAAGAAA  100

seq1  AAAATAAGTGGTGTGACTTAACGTGAATGGGTATTTGAATAGAGAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTGGTGTGACTTAACGTGAATGGGTATTTGAATAGAGAATGCA  150

seq1  AGGAATTAAGGAATAAAGTTGGACTTGCATATCAACGAGACAATGACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTAAGGAATAAAGTTGGACTTGCATATCAACGAGACAATGACACC  200

seq1  ACTAACATTAATGGAGTGTGGTTACAAGGGGGATAATACAGGGCACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACATTAATGGAGTGTGGTTACAAGGGGGATAATACAGGGCACACAC  250

seq1  ACACACACACACACACACACACACACACACACACACGTCTCCTTTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACGTCTCCTTTGGTTT  300

seq1  TAAGTTCCCCAAATTACTCTGGGTGTGGGGGGCTGGGGGGACGGGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCCCCAAATTACTCTGGGTGTGGGGGGCTGGGGGGACGGGAATCT  350

seq1  AATTCACAGCTCTTAACCTTTTCTAAAACTTTGGAGTCCAATCTGTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAGCTCTTAACCTTTTCTAAAACTTTGGAGTCCAATCTGTAGCA  400

seq1  GCCACAGGCAGGCTTGCCTGTGACACCAGAGAGGAACTCCCTCCCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGCAGGCTTGCCTGTGACACCAGAGAGGAACTCCCTCCCTTCCT  450

seq1  GTAAACAAACGAACAAATGAACAAACATCTTAAGCCTTCAGGAAGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAACGAACAAATGAACAAACATCTTAAGCCTTCAGGAAGTTTCC  500

seq1  CAGCCACACCATTCACCAGGGAACAGCAAAAACCTCCCCACTCCCTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACACCATTCACCAGGGAACAGCAAAAACCTCCCCACTCCCTTCTC  550

seq1  TCTCCTGAGTGGCTGCACTCTGATTCTTTCTCCTTTGCCTGATTGAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAGTGGCTGCACTCTGATTCTTTCTCCTTTGCCTGATTGAATGA  600

seq1  CAGCAAACCTGAACTCACTCGAATCTCACATCTGTTACAATTGGAATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACCTGAACTCACTCGAATCTCACATCTGTTACAATTGGAATCTT  650

seq1  TTCTTTTCTAGGACCGGCCGCCCAATACGTTTCATTCTAGAGCGTAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTAGGACCGGCCGCCCAATACGTTTCATTCTAGAGCGTAGGGA  700

seq1  TGACATGTTGATAACTGGAGGACGTCACCCACTACTCGGGAAATACAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTTGATAACTGGAGGACGTCACCCACTACTCGGGAAATACAAGG  750

seq1  TGAGTGGGTGGCCACGTCCCTGCACAGACGCCACTCCAGGGGCCTGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGGTGGCCACGTCCCTGCACAGACGCCACTCCAGGGGCCTGTGTC  800

seq1  TTGCAGCTCCAGTCCTTTGGAGCTCTCTGCTCCCCCGTGCAGGTGGTTGG  850
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TTGCAGCTCCAGTCC-TTGGAGCTCTCTGCTCCCCCGTGCA-GTGGTTGG  848

seq1  TGTGCATGCTTTGGTCTTACCAAGCCTCAGTATCACCAGCGTGACCTGTG  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGC-TTGGTCTTACCAAGCCTCAGTATCACCAGCGTGACCTGTG  897

seq1  AGTCACTGCACATAGAAGAAAAAGAGATACTAATACAGAGACT  943
      ||| ||||| ||||||||||||||||||||| |||||||||||
seq2  AGT-ACTGCTCATAGAAGAAAAAGAGATACTTATACAGAGACT  939