BAC Information

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BAC

Clone NameB6Ng01-084P20
Chromosome1 (Build37)
Map Location 61,171,557 - 61,283,769
singlet/doubletdoublet
Overlap geneLOC100042566
Upstream geneCarf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313
Downstream genePard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084P20.bB6Ng01-084P20.g
ACCDH898786DH898787
length1,154368
definitionDH898786|Mus musculus domesticus DNA, BAC clone: B6Ng01-084P20, 5' end.DH898787|Mus musculus domesticus DNA, BAC clone: B6Ng01-084P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,171,557 - 61,172,726)(61,283,396 - 61,283,769)
sequence
gaattcttggagactgactgtgggtctcagggaagatggcttcagagggc
acataccccaaatcagccacacacacacacacacacacacacacacacac
acacacgcacgcacgcacgcgcgcgcgttgattgagaagaaagctagagt
gtggcatttttggcgatagcctgagtacaggaacggctgtgggcatgctc
tgtaagtatgcatgctcaggtaagtttggctgtggtgttacggctgagca
gagcagggagctctggacggtacagtggggggctgtgcacctggtagttt
aataaatgaggaccttaaggagggtacaccagtcagacacggagcttccc
tactctgttctatctgagcctttctacccattgataatgaagatgtcatt
cattcacaagtgcaactctaggcaggccacgagctaacctgcatggtctg
cgcagtaggatttcatttctaccctaagtgaggtctagaattaggattgt
cttcctaagccttgcattcctgatgccctgaacttgtgctccatccatgt
gatgctacattctcctttgttcttgatacatactcaatgatgggaaggaa
tttagctttgaaccccaaagagactgcttagagctctaatgaaagtttct
ccatgctcactgactttcaggatagagtgtgggatggatgcattgtgtgg
gatggagttcagaagctagctgagaactgtccagtccttatgcccaggga
tggagctttcagtacctagggtacccgaggctcagagatttgaagactgt
gatctttttactcttacagcctgtgtgtcagtggcaagctattctcttcg
aagttatatactttagctcaacatactttcctctttctgctcgcttttaa
aattaaattcattgaaaaatatatgaaaatataatctgtagtccatgggg
tgtatttgaagtgctcagtagctacaagtggttaacgggtgccgtcagga
accttattggacaacacagctacaaacattcatggtggaaggttttatag
gaaaatcgtggaaagcatgagtgttggtggttcatttgctttgagtggta
agctgaaatatcggcttgctggcacatgctggaatcaactctgtcttaga
tagg
agtcatggtactgttgtagagttctctagatgattgtaataggtagctat
tgcttaggtccccaatatctgttaatctctttgtctctgtctctctgtct
ctgtctctgtctctgtctctgtctctgtctctctctctctctctctctct
ctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgg
taaatgacctcatttcttacagtacctccttcgtacttttgacagccctc
atagtgcctgagacacaggaggtgtccatgcattctttgtgaattcaaat
aagtaaaatatgcatgagacaaagctaccatgacctagcttagacaattc
ataaacttgcttttgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61171557_61172726
seq2: B6Ng01-084P20.b_45_1198

seq1  GAATTCTTGGAGACTGACTGTGGGTCTCAGGGAAGATGGCTTCAGAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGACTGACTGTGGGTCTCAGGGAAGATGGCTTCAGAGGGC  50

seq1  ACATACCCCAAATCAGCCACACACACACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCCCAAATCAGCCACACACACACACACACACACACACACACACAC  100

seq1  ACACACGCACGCACGCACGCGCGCGCGTTGATTGAGAAGAAAGCTAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGCACGCACGCACGCGCGCGCGTTGATTGAGAAGAAAGCTAGAGT  150

seq1  GTGGCATTTTTGGCGATAGCCTGAGTACAGGAACGGCTGTGGGCATGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATTTTTGGCGATAGCCTGAGTACAGGAACGGCTGTGGGCATGCTC  200

seq1  TGTAAGTATGCATGCTCAGGTAAGTTTGGCTGTGGTGTTACGGCTGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTATGCATGCTCAGGTAAGTTTGGCTGTGGTGTTACGGCTGAGCA  250

seq1  GAGCAGGGAGCTCTGGACGGTACAGTGGGGGGCTGTGCACCTGGTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGAGCTCTGGACGGTACAGTGGGGGGCTGTGCACCTGGTAGTTT  300

seq1  AATAAATGAGGACCTTAAGGAGGGTACACCAGTCAGACACGGAGCTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGAGGACCTTAAGGAGGGTACACCAGTCAGACACGGAGCTTCCC  350

seq1  TACTCTGTTCTATCTGAGCCTTTCTACCCATTGATAATGAAGATGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTTCTATCTGAGCCTTTCTACCCATTGATAATGAAGATGTCATT  400

seq1  CATTCACAAGTGCAACTCTAGGCAGGCCACGAGCTAACCTGCATGGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAAGTGCAACTCTAGGCAGGCCACGAGCTAACCTGCATGGTCTG  450

seq1  CGCAGTAGGATTTCATTTCTACCCTAAGTGAGGTCTAGAATTAGGATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTAGGATTTCATTTCTACCCTAAGTGAGGTCTAGAATTAGGATTGT  500

seq1  CTTCCTAAGCCTTGCATTCCTGATGCCCTGAACTTGTGCTCCATCCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAAGCCTTGCATTCCTGATGCCCTGAACTTGTGCTCCATCCATGT  550

seq1  GATGCTACATTCTCCTTTGTTCTTGATACATACTCAATGATGGGAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTACATTCTCCTTTGTTCTTGATACATACTCAATGATGGGAAGGAA  600

seq1  TTTAGCTTTGAACCCCAAAGAGACTGCTTAGAGCTCTAATGAAAGTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTTGAACCCCAAAGAGACTGCTTAGAGCTCTAATGAAAGTTTCT  650

seq1  CCATGCTCACTGACTTTCAGGATAGAGTGTGGGATGGATGCATTGTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTCACTGACTTTCAGGATAGAGTGTGGGATGGATGCATTGTGTGG  700

seq1  GATGGAGTTCAGAAGCTAGCTGAGAACTGTCCAGTCCTTATGCCCAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGTTCAGAAGCTAGCTGAGAACTGTCCAGTCCTTATGCCCAGGGA  750

seq1  TGGAGCTTTCAGTACCTAGGGTACCCGAGGCTCAGAGATTTGAAGACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTTCAGTACCTAGGGTACCCGAGGCTCAGAGATTTGAAGACTGT  800

seq1  GATCTTTTTACTCTTACAGCCTGTGTGTCAGTGGCAAGCTATTCTCTTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTTACTCTTACAGCCTGTGTGTCAGTGGCAAGCTATTCTCTTCG  850

seq1  AAGTTATATACTTTAGCTCAACATACTTTCCTCTTTCTGCTCGCTTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATATACTTTAGCTCAACATACTTTCCTCTTTCTGCTCGCTTTTAA  900

seq1  AATTTAAATTCATTGAAAAATATATGAAAATATAATTCTGTAGTTCCATG  950
      || |||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  AA-TTAAATTCATTGAAAAATATATGAAAATATAA-TCTGTAG-TCCATG  947

seq1  GGGTGTATTTGAAGTGCTCAGTAGCTACAAGTGGTTAACGGGTGCCGTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTATTTGAAGTGCTCAGTAGCTACAAGTGGTTAACGGGTGCCGTCA  997

seq1  GGAACCTTATTGGACAACACAGCTACAAACATTTCATTGTGGAAGGTTTT  1050
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  GGAACCTTATTGGACAACACAGCTACAAACA-TTCATGGTGGAAGGTTTT  1046

seq1  ATAGGACAATCGT-GAAAGCATTGAGTGTTTGTATGTTCATTTGTTTTTG  1099
      |||||| |||||| ||||||| |||||||| ||  |||||||||  ||||
seq2  ATAGGAAAATCGTGGAAAGCA-TGAGTGTTGGT-GGTTCATTTG-CTTTG  1093

seq1  AGTGGGTTAAGCCTTGAAATATTCTGTCTTTGCTGGCACATGCCTTTGAT  1149
      |||||  |||||  ||||||| || |   ||||||||||||||  | || 
seq2  AGTGG--TAAGC--TGAAATA-TCGG--CTTGCTGGCACATGC--TGGAA  1134

seq1  CCAACTTCTGTCTTAGTTAGG  1170
       |||| |||||||||| ||||
seq2  TCAAC-TCTGTCTTAGATAGG  1154

seq1: chr1_61283396_61283769
seq2: B6Ng01-084P20.g_70_443 (reverse)

seq1  CTACAAAAGCAAGTTTATGAATTGTCTAAGCTAGGTCAAGGTAGCTTTGT  50
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTACAAAAGCAAGTTTATGAATTGTCTAAGCTAGGTCATGGTAGCTTTGT  50

seq1  CTCATGCATATTTTACTTATTTGAATTCACAAAGAATGCATGGACACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCATATTTTACTTATTTGAATTCACAAAGAATGCATGGACACCTC  100

seq1  CTGTGTCTCAGGCACTATGCGGGCTGTCAAAAGTACGAAGGAGGTACTGT  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGTGTCTCAGGCACTATGAGGGCTGTCAAAAGTACGAAGGAGGTACTGT  150

seq1  AAGAAATGAGGTCATTTACCACACACACACACACACACACACACACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAGGTCATTTACCACACACACACACACACACACACACACACAG  200

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAG  250

seq1  AGACAGAGACAGAGACAGAGACAGAGAGACAGAGACAAAGAGATTAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGACAGAGACAGAGACAGAGAGACAGAGACAAAGAGATTAACAG  300

seq1  ATATTGGGGACCTAAGCAATAGCTACCTATTACAATCATCTAGAGAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGGGACCTAAGCAATAGCTACCTATTACAATCATCTAGAGAACTC  350

seq1  TACAACAGTACCATGACTGAATTC  374
      ||||||||||||||||||||||||
seq2  TACAACAGTACCATGACTGAATTC  374