BAC Information

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BAC

Clone NameB6Ng01-085I08
Chromosome1 (Build37)
Map Location 92,371,285 - 92,530,269
singlet/doubletdoublet
Overlap geneCops8
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneCol6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085I08.bB6Ng01-085I08.g
ACCDH899172DH899173
length1,077342
definitionDH899172|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I08, 5' end.DH899173|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,371,285 - 92,372,374)(92,529,928 - 92,530,269)
sequence
gaattctaaaaccccctcagagggaaaaagtgttagagtctgaagaaacc
accagtgcttagacttacatggcccattagatatggcatccctcctgtaa
gccactggggggtttcctggaaacatccagttcttgggaactctggcggg
cgagtttattgtgtttgcaaagctgatataaatgaatgagtagcaatctc
aggcctctgcagaaaaatggattgggaacgtttgtggttgtggggagggc
agatgacgttcatgatagcaaagaagcctctggaatttttctgttgatct
tcatcctggcgaagaccctcgaacagaatgtgtgctttgcactttaaaac
cgaattggtttgtgtgtctggagagaggaaaggcagctttcagggaagga
ataattcccactgtctctcaggcctaagggacaaaggaaggccatttgca
atttgaacagaaactctgaaaggatgtcttttagactctgtgatttgagg
ggctcctacactctcaggctgcccctccatttgcattttaactggctttt
ttcttttttcttttggcaaggccattgtggacaggaaagcctctgccctt
gtacacagtgcccatgcagctggcctcccagtcccattgtgggcaggtgc
tcctggggggacatcggtcctctcagggctctcgtttcagttgttcttgg
tgtgtccacatcctcctctcctttgaaagaactgcacgttagttagatca
tgaaataggaagcagaacgccccaccattccctgacctaactgaagattt
atgtggaagtgaaatcaggcatatccattttgcaggcatctcccatagag
agcaaactaggcacaagaaagctttgaccaaccctataggtcagccctgc
aaacaccacctagtgaggcatccctgatccaaggagggatctcacacagt
cttcgtgatgctgatcagggccggcccacaccgttcatttgcacagacct
ggaggaagaagctcagcatcatgcaggtcttcacacgagggattccacct
caccgacagagctgctaagaaaacgat
ttgacaggtagtgaagagggagggtggggccagggatacccagtggggca
ccttgtgccctgcctgtggacctctgctgccctctgcagatcaggggagc
ccaggcatcttgagtctggctaacccttgaggcccccatcggaggcctgg
aatacctgactgtagaggagggtgggtctccaggctggggagccattgct
actgacagatttcggtaggatgggtgtcatgtcctttacagaaaatacga
ccacaccagatcctcatgcatgagcactgctgagtagaccaagtagaaaa
gcatcactggagatggtatggtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92371285_92372374
seq2: B6Ng01-085I08.b_46_1122

seq1  GAATTCTAAAACCCCCTCAGAGGGAAAAAGTGTTAGAGTCTGAAGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAACCCCCTCAGAGGGAAAAAGTGTTAGAGTCTGAAGAAACC  50

seq1  ACCAGTGCTTAGACTTACATGGCCCATTAGATATGGCATCCCTCCTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGCTTAGACTTACATGGCCCATTAGATATGGCATCCCTCCTGTAA  100

seq1  GCCACTGGGGGGTTTCCTGGAAACATCCAGTTCTTGGGAACTCTGGCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGGGGGTTTCCTGGAAACATCCAGTTCTTGGGAACTCTGGCGGG  150

seq1  CGAGTTTATTGTGTTTGCAAAGCTGATATAAATGAATGAGTAGCAATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTATTGTGTTTGCAAAGCTGATATAAATGAATGAGTAGCAATCTC  200

seq1  AGGCCTCTGCAGAAAAATGGATTGGGAACGTTTGTGGTTGTGGGGAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCTGCAGAAAAATGGATTGGGAACGTTTGTGGTTGTGGGGAGGGC  250

seq1  AGATGACGTTCATGATAGCAAAGAAGCCTCTGGAATTTTTCTGTTGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACGTTCATGATAGCAAAGAAGCCTCTGGAATTTTTCTGTTGATCT  300

seq1  TCATCCTGGCGAAGACCCTCGAACAGAATGTGTGCTTTGCACTTTAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGGCGAAGACCCTCGAACAGAATGTGTGCTTTGCACTTTAAAAC  350

seq1  CGAATTGGTTTGTGTGTCTGGAGAGAGGAAAGGCAGCTTTCAGGGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTGGTTTGTGTGTCTGGAGAGAGGAAAGGCAGCTTTCAGGGAAGGA  400

seq1  ATAATTCCCACTGTCTCTCAGGCCTAAGGGACAAAGGAAGGCCATTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCCCACTGTCTCTCAGGCCTAAGGGACAAAGGAAGGCCATTTGCA  450

seq1  ATTTGAACAGAAACTCTGAAAGGATGTCTTTTAGACTCTGTGATTTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACAGAAACTCTGAAAGGATGTCTTTTAGACTCTGTGATTTGAGG  500

seq1  GGCTCCTACACTCTCAGGCTGCCCCTCCATTTGCATTTTAACTGGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTACACTCTCAGGCTGCCCCTCCATTTGCATTTTAACTGGCTTTT  550

seq1  TTCTTTTTTCTTTTGGCAAGGCCATTGTGGACAGGAAAGCCTCTGCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTCTTTTGGCAAGGCCATTGTGGACAGGAAAGCCTCTGCCCTT  600

seq1  GTACACAGTGCCCATGCAGCTGGCCTCCCAGTCCCATTGTGGGCAGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGTGCCCATGCAGCTGGCCTCCCAGTCCCATTGTGGGCAGGTGC  650

seq1  TCCTGGGGGGACATCGGTCCTCTCAGGGCTCTCGTTTCAGTTGTTCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGGGACATCGGTCCTCTCAGGGCTCTCGTTTCAGTTGTTCTTGG  700

seq1  TGTGTCCACATCCTCCTCTCCTTTGAAAGAACTGCACGTTAGTTAGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCACATCCTCCTCTCCTTTGAAAGAACTGCACGTTAGTTAGATCA  750

seq1  TGAAATAGGAAGCAGAACGCCCCACCATTCCCTGACCTAACTGAAGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGGAAGCAGAACGCCCCACCATTCCCTGACCTAACTGAAGATTT  800

seq1  ATGTGGAAGTGAAATCAGGCATATCCATTTTGCAGGCATCTCCCATAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAGTGAAATCAGGCATATCCATTTTGCAGGCATCTCCCATAGAG  850

seq1  AGCAAACTAAGGCACAAGAAAGCTTTGACCAACCCTATAGGTCAGGCCCT  900
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  AGCAAACT-AGGCACAAGAAAGCTTTGACCAACCCTATAGGTCA-GCCCT  898

seq1  GCAAACACCACCTAGTGAGGCATCCCTGATCCAAGGAGGGATTCTCCACA  950
      ||||||||||||||||||||||||||||||||||||||||| ||| ||| 
seq2  GCAAACACCACCTAGTGAGGCATCCCTGATCCAAGGAGGGA-TCT-CAC-  945

seq1  ACAGTCTCCGTGATGCTGAATCAGGGGCCGGCCCACACCGTTCCATTTGC  1000
      ||||||| |||||||||| |||| |||||||||||||||||| |||||||
seq2  ACAGTCTTCGTGATGCTG-ATCA-GGGCCGGCCCACACCGTT-CATTTGC  992

seq1  ACAGACCTGGAGGAAGAAGGCTCAGCAGCATGCAGGCTCTCACCACA-GA  1049
      |||||||||||||||||| |||||||| ||||||||   ||  |||| ||
seq2  ACAGACCTGGAGGAAGAA-GCTCAGCATCATGCAGG---TCTTCACACGA  1038

seq1  GGGATCCCACCTCACCGACAGAAGGCATGCTAAG-AAACGAT  1090
      ||||| ||||||||||||||||  || ||||||| |||||||
seq2  GGGATTCCACCTCACCGACAGA--GC-TGCTAAGAAAACGAT  1077

seq1: chr1_92529928_92530269
seq2: B6Ng01-085I08.g_74_415 (reverse)

seq1  ACACACACACACACACACACACCATACCATCTCCAGTGATGCTTTTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACCATACCATCTCCAGTGATGCTTTTCTAC  50

seq1  TTGGTCTACTCAGCAGTGCTCATGCATGAGGATCTGGTGTGGTCGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTACTCAGCAGTGCTCATGCATGAGGATCTGGTGTGGTCGTATTT  100

seq1  TCTGTAAAGGACATGACACCCATCCTACCGAAATCTGTCAGTAGCAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAGGACATGACACCCATCCTACCGAAATCTGTCAGTAGCAATGG  150

seq1  CTCCCCAGCCTGGAGACCCACCCTCCTCTACAGTCAGGTATTCCAGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGCCTGGAGACCCACCCTCCTCTACAGTCAGGTATTCCAGGCCT  200

seq1  CCGATGGGGGCCTCAAGGGTTAGCCAGACTCAAGATGCCTGGGCTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGGGGGCCTCAAGGGTTAGCCAGACTCAAGATGCCTGGGCTCCCCT  250

seq1  GATCTGCAGAGGGCAGCAGAGGTCCACAGGCAGGGCACAAGGTGCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCAGAGGGCAGCAGAGGTCCACAGGCAGGGCACAAGGTGCCCCAC  300

seq1  TGGGTATCCCTGGCCCCACCCTCCCTCTTCACTACCTGTCAA  342
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATCCCTGGCCCCACCCTCCCTCTTCACTACCTGTCAA  342