BAC Information

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BAC

Clone NameB6Ng01-085J03
Chromosome1 (Build37)
Map Location 26,439,060 - 26,539,446
singlet/doubletdoublet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik, LOC677427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085J03.bB6Ng01-085J03.g
ACCDH899210DH899211
length1,119995
definitionDH899210|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J03, 5' end.DH899211|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,538,304 - 26,539,446)(26,439,060 - 26,440,044)
sequence
gaattcttaagaattctgcagaaggatcaatgatccttagcttcttagct
gagtgcaatctctcctgcttggattgtttgtttatttctttgttttgttt
atagtttttgtttgtttgtttgtttggttggttagatagaacataatgca
acctattctatgatctcttttctgattgcttgaacagttctttcagtgat
tttattcatatgttcttttattcttcctatatagcaaataggaagaaaaa
gggctagaaataggtaataaaactgacgcatttccaaggtgtccagcttt
tttctcatcttgctgaatggagacaaacacttggcaatttataataaaag
ccttgtaggttcttaaattccacctgcaggctacctgctgatcagtaggt
gcaacaaatacaggacctgctaccaggacacatcatgcaaaggttctgag
ccattctactattcaagctttcttcaaagtgcccaaccccaaactagggg
agaaaaacactacaggagcttttaaaaccccagaccagccaggcagtgat
ggcacactttaatcccagcacttgggaggcagaggcaggtggatttctga
gttcgaggacagcctggtctacaaagtgagttccaggacagccagggcta
tacagagaaaccctgtctcaaaaaaccaaaaaacaaacaaacaaacaaac
aaacaactcagaccatgataaatgactagatattttggctctcaggttat
aggcaccaccatcccatcccaccccactgtgcatgctatgttaattcaaa
aatacaatgaaaaagtccatgaagcccatgacagtattttttcctgttac
atatctctgtatcactgatatatgctttttcatatgtagaaaaaaactaa
accttatttcctacttctaaatttccatctagactgtgtttattcagccc
cgtatgtaggacatatgaagttcttgagctaatatgtactgttagatgca
tgatgataaacacatgatgataaagaaaagaaagttcactgactcaaata
cattggctaattagttaatcagcaattactataaaaagcaaccctttcac
gactgtaatggctgctgcc
gaattcattagagagattcaaaaaactgacctaagcaaacaggaagataa
acagttagattcaaaagacaattgaatttatctagtctgagatgtgggaa
tcaaagagaatggagaacaatgaacacagactggaggtttatatcaaatt
gattctataggtagttgatgtatttgaagaaataaaatgaaaaaatccca
tacaaataatgaacatcgaagaaatccatcaatatccatgcagaatgaat
tataataaaccgagattttttaaaaggctattaaaagtataaagagagcc
atagttctgtcttgcacatggaatcctctgaataacttttattctatcag
acatgatggcagagactgtgagatcacatatatgaaatgactgaaaagat
tgaatgacaaatatcccatatttacttaaattacaaaggacttaaggcac
tttaagataaatcaaagcagctgatatttggtaaaacatttatttattta
tttatttatttattcattcattcattcatttatttattttaattagatat
cttctttatttacatttcaaatgttaccctttttcctagtttcctctctg
aaaatcccctacatcctccccttgctcctcaacccacccactcctgcttc
ctggccctggcattcccctacactggggcatagaatctttgaaggaccaa
gggtctctcctcccattgattgctgactaggccattctctgctatatacg
cagctaaagacatgagtcccaccatgtgttttctttgattggtggcttat
ttccaggggtcattgggggttactggtttatttcatgttttcttcctagg
gagctacaaaccccttcagcctcttgggtactttctctagttccttcatt
ggggaccctgttctccatccaatagatgacacttctgtatttgccaggca
ctggcagaagcctcacaggagaaagctaaatcaggctctgtcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_26538304_26539446
seq2: B6Ng01-085J03.b_48_1166 (reverse)

seq1  GGCAGCAGCCCAATTACAGTCGTGAAAGGGTTTGCTTTTTTTATAGTTAA  50
      ||||||||||  |||||||||||||||||| ||||  ||||||||| |||
seq2  GGCAGCAGCC--ATTACAGTCGTGAAAGGG-TTGC--TTTTTATAG-TAA  44

seq1  TTGCTTGATTTAACTAATTTGGCCAATGTTATTTGGGTCAGTGGACTTTT  100
      |||| ||| |||||||| || ||||||| |||||| ||||||| ||||| 
seq2  TTGC-TGA-TTAACTAA-TTAGCCAATG-TATTTGAGTCAGTGAACTTTC  90

seq1  TCTTTTTTTCTTTTTTTTTCATTCATGTGTTTATTCATTCATGCATCTAT  150
      |         ||| ||| ||| ||||||||||| ||| ||||||||||| 
seq2  T---------TTTCTTTATCA-TCATGTGTTTA-TCA-TCATGCATCTA-  127

seq1  ACAGTACATATTAGCTCAAGAACTTCATATGTCCTACATACGGGGCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACATATTAGCTCAAGAACTTCATATGTCCTACATACGGGGCTGAA  177

seq1  TAAAACACAGTCTAGATGGAAATTTAGAAGTAGGAAATAAGGTTTAGTTT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAACACAGTCTAGATGGAAATTTAGAAGTAGGAAATAAGGTTTAGTTT  226

seq1  TTTTCTACATATGAAAAAGCATATATCAGTGATACAGAGATATGTAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACATATGAAAAAGCATATATCAGTGATACAGAGATATGTAACAG  276

seq1  GAAAAAATACTGTCATGGGCTTCATGGACTTTTTCATTGTATTTTTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATACTGTCATGGGCTTCATGGACTTTTTCATTGTATTTTTGAAT  326

seq1  TAACATAGCATGCACAGTGGGGTGGGATGGGATGGTGGTGCCTATAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGCATGCACAGTGGGGTGGGATGGGATGGTGGTGCCTATAACCT  376

seq1  GAGAGCCAAAATATCTAGTCATTTATCATGGTCTGAGTTGTTTGTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCAAAATATCTAGTCATTTATCATGGTCTGAGTTGTTTGTTTGTT  426

seq1  TGTTTGTTTGTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCT  476

seq1  GGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAA  526

seq1  TCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGTGTGCCATCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGTGTGCCATCACTG  576

seq1  CCTGGCTGGTCTGGGGTTTTAAAAGCTCCTGTAGTGTTTTTCTCCCCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGGTCTGGGGTTTTAAAAGCTCCTGTAGTGTTTTTCTCCCCTAG  626

seq1  TTTGGGGTTGGGCACTTTGAAGAAAGCTTGAATAGTAGAATGGCTCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTTGGGCACTTTGAAGAAAGCTTGAATAGTAGAATGGCTCAGAA  676

seq1  CCTTTGCATGATGTGTCCTGGTAGCAGGTCCTGTATTTGTTGCACCTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCATGATGTGTCCTGGTAGCAGGTCCTGTATTTGTTGCACCTACT  726

seq1  GATCAGCAGGTAGCCTGCAGGTGGAATTTAAGAACCTACAAGGCTTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCAGGTAGCCTGCAGGTGGAATTTAAGAACCTACAAGGCTTTTAT  776

seq1  TATAAATTGCCAAGTGTTTGTCTCCATTCAGCAAGATGAGAAAAAAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTGCCAAGTGTTTGTCTCCATTCAGCAAGATGAGAAAAAAGCTG  826

seq1  GACACCTTGGAAATGCGTCAGTTTTATTACCTATTTCTAGCCCTTTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTGGAAATGCGTCAGTTTTATTACCTATTTCTAGCCCTTTTTCT  876

seq1  TCCTATTTGCTATATAGGAAGAATAAAAGAACATATGAATAAAATCACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTGCTATATAGGAAGAATAAAAGAACATATGAATAAAATCACTG  926

seq1  AAAGAACTGTTCAAGCAATCAGAAAAGAGATCATAGAATAGGTTGCATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTGTTCAAGCAATCAGAAAAGAGATCATAGAATAGGTTGCATTA  976

seq1  TGTTCTATCTAACCAACCAAACAAACAAACAAACAAAAACTATAAACAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATCTAACCAACCAAACAAACAAACAAACAAAAACTATAAACAAA  1026

seq1  ACAAAGAAATAAACAAACAATCCAAGCAGGAGAGATTGCACTCAGCTAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAATAAACAAACAATCCAAGCAGGAGAGATTGCACTCAGCTAAG  1076

seq1  AAGCTAAGGATCATTGATCCTTCTGCAGAATTCTTAAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGGATCATTGATCCTTCTGCAGAATTCTTAAGAATTC  1119

seq1: chr1_26439060_26440044
seq2: B6Ng01-085J03.g_70_1056

seq1  GAATTCATTAGAGAGATTCAAAAAACTGACCTAAGCAAACAGGAAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGAGAGATTCAAAAAACTGACCTAAGCAAACAGGAAGATAA  50

seq1  ACAGTTAGATTCAAAAGACAATTGAATTTATCTAGTCTGAGATGTGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGATTCAAAAGACAATTGAATTTATCTAGTCTGAGATGTGGGAA  100

seq1  TCAAAGAGAATGGAGAACAATGAACACAGACTGGAGGTTTATATCAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGAATGGAGAACAATGAACACAGACTGGAGGTTTATATCAAATT  150

seq1  GATTCTATAGGTAGTTGATGTATTTGAAGAAATAAAATGAAAAAATCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATAGGTAGTTGATGTATTTGAAGAAATAAAATGAAAAAATCCCA  200

seq1  TACAAATAATGAACATCGAAGAAATCCATCAATATCCATGCAGAATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAATGAACATCGAAGAAATCCATCAATATCCATGCAGAATGAAT  250

seq1  TATAATAAACCGAGATTTTTTAAAAGGCTATTAAAAGTATAAAGAGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAACCGAGATTTTTTAAAAGGCTATTAAAAGTATAAAGAGAGCC  300

seq1  ATAGTTCTGTCTTGCACATGGAATCCTCTGAATAACTTTTATTCTATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTGTCTTGCACATGGAATCCTCTGAATAACTTTTATTCTATCAG  350

seq1  ACATGATGGCAGAGACTGTGAGATCACATATATGAAATGACTGAAAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGGCAGAGACTGTGAGATCACATATATGAAATGACTGAAAAGAT  400

seq1  TGAATGACAAATATCCCATATTTACTTAAATTACAAAGGACTTAAGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACAAATATCCCATATTTACTTAAATTACAAAGGACTTAAGGCAC  450

seq1  TTTAAGATAAATCAAAGCAGCTGATATTTGGTAAAACATTTATTTATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATAAATCAAAGCAGCTGATATTTGGTAAAACATTTATTTATTTA  500

seq1  TTTATTTATTTATTCATTCATTCATTCATTTATTTATTTTAATTAGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTCATTCATTCATTCATTTATTTATTTTAATTAGATAT  550

seq1  CTTCTTTATTTACATTTCAAATGTTACCCTTTTTCCTAGTTTCCTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTATTTACATTTCAAATGTTACCCTTTTTCCTAGTTTCCTCTCTG  600

seq1  AAAATCCCCTACATCCTCCCCTTGCTCCTCAACCCACCCACTCCTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCCCTACATCCTCCCCTTGCTCCTCAACCCACCCACTCCTGCTTC  650

seq1  CTGGCCCTGGCATTCCCCTACACTGGGGCATAGAATCTTTGAAGGACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTGGCATTCCCCTACACTGGGGCATAGAATCTTTGAAGGACCAA  700

seq1  GGGTCTCTCCTCCCATTGATTGCTGACTAGGCCATTCTCTGCTATATACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTCCTCCCATTGATTGCTGACTAGGCCATTCTCTGCTATATACG  750

seq1  CAGCTAAAGACATGAGTCCCACCATGTGTTTTCTTTGATTGGTGGCTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGCTAAAGACATGAGTCCCACCATGTGTTTTCTTTGATTGGTGGCTTAT  800

seq1  TTCCAGGGGTCATT-GGGGTTACTGG-TTAATTCATGTTGTTCTTCCTAG  848
      |||||||||||||| ||||||||||| ||| |||||||| ||||||||||
seq2  TTCCAGGGGTCATTGGGGGTTACTGGTTTATTTCATGTT-TTCTTCCTAG  849

seq1  GGAGCTACAAACCCCTTCAGCCTCTTGGGTACTTTCTCTAGTTCCTTCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTACAAACCCCTTCAGCCTCTTGGGTACTTTCTCTAGTTCCTTCAT  899

seq1  TGGGGACCCTGTTCTCCATCCAATAGATGACACTTCTGTATTTGCCAGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCCTGTTCTCCATCCAATAGATGACACTTCTGTATTTGCCAGGC  949

seq1  ACTGGCAG-AGCCTCACAGGAGACAGCTAAATCAGGCT  985
      |||||||| |||||||||||||| ||||||||||||||
seq2  ACTGGCAGAAGCCTCACAGGAGAAAGCTAAATCAGGCT  987