BAC Information

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BAC

Clone NameB6Ng01-085J19
Chromosome1 (Build37)
Map Location 74,595,283 - 74,739,198
singlet/doubletdoublet
Overlap genePlcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1
Downstream geneCyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085J19.bB6Ng01-085J19.g
ACCDH899241DH899242
length1,1471,056
definitionDH899241|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J19, 5' end.DH899242|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,595,283 - 74,596,448)(74,738,145 - 74,739,198)
sequence
gaattcttctaactcccctctaggtacttggaaagaggaaagcttcaggc
ctgaaacaggcatgcactgtactcttctggtggacctattttgcaggtgt
aattgtcagccccactagctctcctgtgggaaccattgccacctgctgtg
aatggaccatccattcattaagatgtgggcactgagaggttaagtttggg
tcttcactctgccagctggtgcctgggagtcaggtctagccagttctagc
tgaacctccttgctgcgctgcctaagaaaacatggagtcccaaaaactcc
tgactcactgggtctccatcaccttgtctgaatgtcctttgggatccagc
tgttagaaactgctctctgtgtctccatggagaagggagttttggtcacc
attcctttcccctattgtgtgtcagactcctttcctcagtgctcccatct
gcttctttcctggcagtttcgatctctgatgtggagaggatacgtaaggg
gcaggattctgagttgttgcgctatctggtggaggagtttcccctggagc
aagggttcaccgttgtctttcatgggcgccgccccaacctggacctagtg
gccaacagtgttgaagaggcccagatttggatgcgaggactccagctgtt
ggtggatcttgttgccagcatggaccaccaggagcaaatggatcagtatc
aacctgatggcgctagggtgtgggcaggggctgctgaagaagtcacgtgc
tgcagaaccaaaggaatgtggggagggtgcagaaatagatccaggtagtg
tggagagagacaggggccaagtatagagctgatgattctgaaggggaaat
ggatgttttcagtcagtgcccgagaatgagactgagaacctgggatagga
ggaaaggccaatgagaggaagatgggcaagcaaggtgctgctcctgtgaa
gtaaacggacatcccagagcaagcattcactacacagcttggaaggagct
ctagagggtgccgtggtgtaccttcacttcagataacctagactgagtat
ccagtgagatattcagtgagaagaaaagtacttgtcctagctgtcactga
actcaatcatggagcccatgtgggagaatgaatcttacacttgtcct
gaattctgtgaacctttcagagggtctataaatgctagggccctgcgagg
tggggtgggttgttggttgtctgctgagacttggttgtggtttgttaagt
agtcatatgcaaagaagaaacaacagaagcagttatacttgccacaacga
actcgactcctctaatcagcaggaagtcgtctaatgatagatcatctcct
ttccccactaaccattttctctatgtagctttaaggggtggaagaaaagg
ggtagagaagggcagaagaaagaagacccccagaaactagccaagtccag
ctacaaacacctacacacttcttagttctactgagcccttgctttcttgt
tatgtctccttttagatcaaggaaacaaaagcagctttccaaatgttctg
gactaggatggagttttgtagatggtaagttcctggggttataaaggtat
acttagttaactaacagaacctaacttagacatatacatctaactatttt
atgtctttgctaactctgttttacataagagaacaacatggatgtgtctg
ataagtagctttctaagttgctatggtctactcaggtcacagtgatacgt
cttagcctcttttgtctctgctaacttttgttaagcttcagctacttttg
ataaactgagtcatgtaagaaactgtgatattctataatggtatactcta
agactaagtaaacagtttaaagacaggtatacttgatagattacgctcct
taaactcttcagggatctcctgaatatagcgtctaaaatgtctaataaaa
attgtcacatgatagacagaaatgtcagatcccagcagaaaccctaatgt
ctcccaagaagaagacagattggagcatgaccccacttgatcttgcataa
cactaacccctgctatagggaactgcccgagctatggacatggttgggtt
gctgctctacttgtctcttaaatttacatttagggccctcaggctctcct
ctcaagaaaatctgagactgagtctggcagccaaaagctaataccgcttt
ttgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74595283_74596448
seq2: B6Ng01-085J19.b_49_1195

seq1  GAATTCTTCTAACTCCCCTCTAGGTACTTGGAAAGAGGAAAGCTTCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAACTCCCCTCTAGGTACTTGGAAAGAGGAAAGCTTCAGGC  50

seq1  CTGAAACAGGCATGCACTGTACTCTTCTGGTGGACCTATTTTGCAGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAGGCATGCACTGTACTCTTCTGGTGGACCTATTTTGCAGGTGT  100

seq1  AATTGTCAGCCCCACTAGCTCTCCTGTGGGAACCATTGCCACCTGCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCAGCCCCACTAGCTCTCCTGTGGGAACCATTGCCACCTGCTGTG  150

seq1  AATGGACCATCCATTCATTAAGATGTGGGCACTGAGAGGTTAAGTTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACCATCCATTCATTAAGATGTGGGCACTGAGAGGTTAAGTTTGGG  200

seq1  TCTTCACTCTGCCAGCTGGTGCCTGGGAGTCAGGTCTAGCCAGTTCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTCTGCCAGCTGGTGCCTGGGAGTCAGGTCTAGCCAGTTCTAGC  250

seq1  TGAACCTCCTTGCTGCGCTGCCTAAGAAAACATGGAGTCCCAAAAACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCCTTGCTGCGCTGCCTAAGAAAACATGGAGTCCCAAAAACTCC  300

seq1  TGACTCACTGGGTCTCCATCACCTTGTCTGAATGTCCTTTGGGATCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCACTGGGTCTCCATCACCTTGTCTGAATGTCCTTTGGGATCCAGC  350

seq1  TGTTAGAAACTGCTCTCTGTGTCTCCATGGAGAAGGGAGTTTTGGTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAACTGCTCTCTGTGTCTCCATGGAGAAGGGAGTTTTGGTCACC  400

seq1  ATTCCTTTCCCCTATTGTGTGTCAGACTCCTTTCCTCAGTGCTCCCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTCCCCTATTGTGTGTCAGACTCCTTTCCTCAGTGCTCCCATCT  450

seq1  GCTTCTTTCCTGGCAGTTTCGATCTCTGATGTGGAGAGGATACGTAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTCCTGGCAGTTTCGATCTCTGATGTGGAGAGGATACGTAAGGG  500

seq1  GCAGGATTCTGAGTTGTTGCGCTATCTGGTGGAGGAGTTTCCCCTGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATTCTGAGTTGTTGCGCTATCTGGTGGAGGAGTTTCCCCTGGAGC  550

seq1  AAGGGTTCACCGTTGTCTTTCATGGGCGCCGCCCCAACCTGGACCTAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTCACCGTTGTCTTTCATGGGCGCCGCCCCAACCTGGACCTAGTG  600

seq1  GCCAACAGTGTTGAAGAGGCCCAGATTTGGATGCGAGGACTCCAGCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGTGTTGAAGAGGCCCAGATTTGGATGCGAGGACTCCAGCTGTT  650

seq1  GGTGGATCTTGTTGCCAGCATGGACCACCAGGAGCAAATGGATCAGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCTTGTTGCCAGCATGGACCACCAGGAGCAAATGGATCAGTATC  700

seq1  AACCTGATGGCGCTAGGGTGTGGGCAGGGGCTGCTGAAGAAGTCAGGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACCTGATGGCGCTAGGGTGTGGGCAGGGGCTGCTGAAGAAGTCACGTGC  750

seq1  TGCAGAACCAAAGGAATGTGGGGAGGGTGCAGAAATAGATCCAGGTAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACCAAAGGAATGTGGGGAGGGTGCAGAAATAGATCCAGGTAGTG  800

seq1  TGGAGAGAGACAGGGGCCAAGTATAGAGCTGATGATTCTGAAGGGGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAGACAGGGGCCAAGTATAGAGCTGATGATTCTGAAGGGGAAAT  850

seq1  GGATGTTTTCAGTCAGTGCCCGAGAATGAGACTGAGAACCTGGGATAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTTCAGTCAGTGCCCGAGAATGAGACTGAGAACCTGGGATAGGA  900

seq1  GGAAAGGCCAATGAGAGGAAGATGGGCAAGCAAGGTGCTGCTCCTGTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCCAATGAGAGGAAGATGGGCAAGCAAGGTGCTGCTCCTGTGAA  950

seq1  GTAAACGGACATCCCAGGAGCAAGCATTCACTACCACAGGCTTGGGAAGG  1000
      |||||||||||||||| |||||||||||||||| |||| |||| ||||||
seq2  GTAAACGGACATCCCA-GAGCAAGCATTCACTA-CACA-GCTT-GGAAGG  996

seq1  AGCTCCTAGAGGGTGCCGTGGTGTACACTCACTTCAAGATAACCTAGACT  1050
      |||| |||||||||||||||||||||  ||||||| ||||||||||||||
seq2  AGCT-CTAGAGGGTGCCGTGGTGTACCTTCACTTC-AGATAACCTAGACT  1044

seq1  GAGGTATCCCAGTGAGATATTTCAGTGAGA--GAAAGTACTTGTCACTAA  1098
      || |||| ||||||||||| ||||||||||   |||||||||||| ||| 
seq2  GA-GTAT-CCAGTGAGATA-TTCAGTGAGAAGAAAAGTACTTGTC-CTA-  1089

seq1  GCCTGTCAACCTGAACTCAAATCCATGGAGCCCACATGGTGGGAGAACTG  1148
        ||||||  ||||||||||   |||||||||||    ||||||||| ||
seq2  -GCTGTCA--CTGAACTCAA--TCATGGAGCCCA---TGTGGGAGAA-TG  1130

seq1  ACTCCTACACCTTGTCCT  1166
      | || |||| ||||||||
seq2  AATCTTACA-CTTGTCCT  1147

seq1: chr1_74738145_74739198
seq2: B6Ng01-085J19.g_69_1124 (reverse)

seq1  CCACACAAAGCGGTATTAGCCTTTGGCTGCCAGACTCAGGTCTCAGATTT  50
      ||||| |||||||||||||| ||||||||||||||||| |||||||| ||
seq2  CCACAAAAAGCGGTATTAGCTTTTGGCTGCCAGACTCA-GTCTCAGA-TT  48

seq1  TTCTGTAGAGGAGGAGCCTGGGGGCC--TAATGTTAACTTTGAGGAGACA  98
      ||||  |||||| ||||||| |||||   ||||| ||  || | ||||||
seq2  TTCTTGAGAGGA-GAGCCTGAGGGCCCTAAATGTAAA--TTTAAGAGACA  95

seq1  AGTAGAGCAGTCAACCCAACAATGTCCATAGCTCGGGCAGTTCCCTAGTA  148
      |||||||||| ||||||||| |||||||||||||||||||||||||| ||
seq2  AGTAGAGCAG-CAACCCAACCATGTCCATAGCTCGGGCAGTTCCCTA-TA  143

seq1  GCAGGGGTTAGTGTTATTGCAGATCAAGTGGGGTCATGCTCC-ATCTGTC  197
      |||||||||||||||||   |||||||||||||||||||||| |||||||
seq2  GCAGGGGTTAGTGTTATGCAAGATCAAGTGGGGTCATGCTCCAATCTGTC  193

seq1  TTCTTCTTCGGAGACATTAGGGTTTCTGCTGGGATCTGACATTTCTGTCT  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTGGGAGACATTAGGGTTTCTGCTGGGATCTGACATTTCTGTCT  243

seq1  ATCATGTGAC-ACTTTTATTAGACATTTTAGACGCTATATTCAGGAGATC  296
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGACAATTTTTATTAGACATTTTAGACGCTATATTCAGGAGATC  293

seq1  CCTGAAGAGTTTAAGGAGCGTAATCTATCAAGTATACCTGTCTTT-AACT  345
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTGAAGAGTTTAAGGAGCGTAATCTATCAAGTATACCTGTCTTTAAACT  343

seq1  GTTTACTTAGTCTTAGAGTATACCATTATAGAATATCACAGTTTCTTACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTAGTCTTAGAGTATACCATTATAGAATATCACAGTTTCTTACA  393

seq1  TGACTCAGTTTATC-AAAGTAGCTGAAGCTTAAC-AAAGTTAGCAGAGAC  443
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  TGACTCAGTTTATCAAAAGTAGCTGAAGCTTAACAAAAGTTAGCAGAGAC  443

seq1  -AAAGAGGCT-AGACGTATCACTGTGACCTGAGTAGACCATAGCAACTTA  491
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGCTAAGACGTATCACTGTGACCTGAGTAGACCATAGCAACTTA  493

seq1  GAAAGCTACTTATCAGACACATCCATGTTGTTCTCTTATGTAAAACAGAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTACTTATCAGACACATCCATGTTGTTCTCTTATGTAAAACAGAG  543

seq1  TTAGCAAAGACATAAAATAGTTAGATGTATATGTCTAAGTTAGGTTCTGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAAGACATAAAATAGTTAGATGTATATGTCTAAGTTAGGTTCTGT  593

seq1  TAGTTAACTAAGTATACCTTTATAACCCCAGGAACTTACCATCTACAAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAACTAAGTATACCTTTATAACCCCAGGAACTTACCATCTACAAAA  643

seq1  CTCCATCCTAGTCCAGAACATTTGGAAAGCTGCTTTTGTTTCCTTGATCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCTAGTCCAGAACATTTGGAAAGCTGCTTTTGTTTCCTTGATCT  693

seq1  AAAAGGAGACATAACAAGAAAGCAAGGGCTCAGTAGAACTAAGAAGTGTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGACATAACAAGAAAGCAAGGGCTCAGTAGAACTAAGAAGTGTG  743

seq1  TAGGTGTTTGTAGCTGGACTTGGCTAGTTTCTGGGGGTCTTCTTTCTTCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTTGTAGCTGGACTTGGCTAGTTTCTGGGGGTCTTCTTTCTTCT  793

seq1  GCCCTTCTCTACCCCTTTTCTTCCACCCCTTAAAGCTACATAGAGAAAAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCTCTACCCCTTTTCTTCCACCCCTTAAAGCTACATAGAGAAAAT  843

seq1  GGTTAGTGGGGAAAGGAGATGATCTATCATTAGACGACTTCCTGCTGATT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTGGGGAAAGGAGATGATCTATCATTAGACGACTTCCTGCTGATT  893

seq1  AGAGGAGTCGAGTTCGTTGTGGCAAGTATAACTGCTTCTGTTGTTTCTTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTCGAGTTCGTTGTGGCAAGTATAACTGCTTCTGTTGTTTCTTC  943

seq1  TTTGCATATGACTACTTAACAAACCACAACCAAGTCTCAGCAGACAACCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATATGACTACTTAACAAACCACAACCAAGTCTCAGCAGACAACCA  993

seq1  ACAACCCACCCCACCTCGCAGGGCCCTAGCATTTATAGACCCTCTGAAAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCACCCCACCTCGCAGGGCCCTAGCATTTATAGACCCTCTGAAAG  1043

seq1  GTTCACAGAATTC  1054
      |||||||||||||
seq2  GTTCACAGAATTC  1056