BAC Information

Click to search

BAC

Clone NameB6Ng01-085N10
Chromosome1 (Build37)
Map Location 174,859,906 - 174,861,032
singlet/doubletsinglet
Overlap genenone
Upstream geneSlamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs
Downstream geneOlfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085N10.bB6Ng01-085N10.g
ACCDH899398DH899399
length1,1931,122
definitionDH899398|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N10, 5' end.DH899399|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccaaataacccaggtcatttccaagcctattgattgttgtcaa
caaactgacaagttcctgctgctgaggcaacacctacataactccctgaa
cacaaagaagttgaactggtacctaccacctagagcctccacacatatta
accagtgtttgtggtactggaaggtacacggcatgctaccagaggagaaa
ggtaaacaccaacccagttacaaacccttccatctgcaatgatgatctgc
ctgccatatatgctggtgcaactgtagcaggagagttgcagtagcaatta
accactatctgcttgaattaaggtccgctccatgagataaaaccacaacc
caccatttcttggtaaagaaatcagaaactaaataggccatggacctaga
aatataacaaatgatactgttctgctaaaggaatgtagcttttaaattac
tcctaatgacattctgatactcttatagatcaatgtcttcctcagccaga
gcaagcttcctcctgaagcagatgggaacaaacacagagacccacagctg
gacaatgtgcagagagtaaaaaaaaaaaaaatccttggagcattccatcc
taaatgtgctatctccaccaaatccttctcctcagagttcatggaactct
gcagaagaggaggcaggcagatgataagagacagtgaagatgaagaacac
cacggaaacaaagggttctatgcacaacaggattaaactcaaagagaatg
tggcagcatgcatgagacctgcccagccctaagccacatgaggccccagg
gttgagaggggaagtggaaactagcgcccatccctaattcagaaactatc
tcaaatagataatcccttgcagaagaaaagcgggtgttctccaacagggc
ctcaccggggatgcaaacagtacttaatagcagcctcattagccagcctt
gatggcaacacaaatacatgatatttagaggctttttgtctcactatgtg
attttttgctactgatatggtttgttatcatttatgggcttgtgtgtgtg
cagatgtgtggtgtctggggctttttttactttgatttttgatgttgctg
tctgtccaataggcctaattcttcctggggctgttgttcaagggaataca
agatggaatgtcattgaaagggaaatctgggggaattggcaat
gaattcaaaagaatatttatcctttcacaggtaaaaggtttagaaaggag
gaaaaaataccttgcatttggaacaatatgagagatgtcttaacattatc
aaaggacttgccaagaccttgtctaccacaagtttctgtgtcaaagtgta
gaattatttgaaagatgttgttttagaagagagctctgcccacacatcct
gcttcttggggcttcctggaatgttgcttcatcagaattcatttcattac
actcaggcacacagaggtcagcacaactgtggtccaagttcaagctggag
gcagaacttaccattgtccatgcaatgctgattctgcaggtacgtggaat
gccataggtacagggtcatggaggttttctcagggatttaaaaggaaatc
ctgaaattcagccaatatatagcagtttggattctctgtgagtagtttct
agataagaggatgtgtgaagctcagagggcaaaatttaagccacagtgga
tacagggactagaaatcactgaggacatggaacatctacaaagaaaaagc
ctaggcagtgagaagagccagcctgaaggagaaccatgtggtttgatggc
atcaaggtcttagaagctcacattctactaccaattctcgtgactccaga
cagactgatgagatttagtgtttactttcatgggcttaggtcttgcctaa
ttctgcccccattctttgtcccatttttccttttgggaatgatggtactt
actctgtgcaattgtttctgtttatatttgctttattttataggagctca
caaccaacattgtctgccttgatagggagcctcagaggacactttgagtt
tggaattttgagaaatgtccttagaaaatactaaatgcattttatattat
gatataaaattgagcttctgaggaccaggggtggaagttgtgtggtttgg
gatatgaagggtcctataaggctcatgttaaagtcttgatcttaagcaga
tggcattactatgaagtgactggatcgtgaaggtgctggagttttactag
attgtaatgcaccgaggttcatagctgaatggtcttttggaactaaggcc
tacttgggggattaagtcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174859906_174861032
seq2: B6Ng01-085N10.g_71_1192

seq1  GAATTCAAAAGAATATTTATCCTTTCACAGGTAAAAGGTTTAGAAAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGAATATTTATCCTTTCACAGGTAAAAGGTTTAGAAAGGAG  50

seq1  GAAAAAATACCTTGCATTTGGAACAATATGAGAGATGTCTTAACATTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATACCTTGCATTTGGAACAATATGAGAGATGTCTTAACATTATC  100

seq1  AAAGGACTTGCCAAGACCTTGTCTACCACAAGTTTCTGTGTCAAAGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTTGCCAAGACCTTGTCTACCACAAGTTTCTGTGTCAAAGTGTA  150

seq1  GAATTATTTGAAAGATGTTGTTTTAGAAGAGAGCTCTGCCCACACATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTTGAAAGATGTTGTTTTAGAAGAGAGCTCTGCCCACACATCCT  200

seq1  GCTTCTTGGGGCTTCCTGGAATGTTGCTTCATCAGAATTCATTTCATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGGGGCTTCCTGGAATGTTGCTTCATCAGAATTCATTTCATTAC  250

seq1  ACTCAGGCACACAGAGGTCAGCACAACTGTGGTCCAAGTTCAAGCTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGCACACAGAGGTCAGCACAACTGTGGTCCAAGTTCAAGCTGGAG  300

seq1  GCAGAACTTACCATTGTCCATGCAATGCTGATTCTGCAGGTACGTGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTTACCATTGTCCATGCAATGCTGATTCTGCAGGTACGTGGAAT  350

seq1  GCCATAGGTACAGGGTCATGGAGGTTTTCTCAGGGATTTAAAAGGAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGGTACAGGGTCATGGAGGTTTTCTCAGGGATTTAAAAGGAAATC  400

seq1  CTGAAATTCAGCCAATATATAGCAGTTTGGATTCTCTGTGAGTAGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTCAGCCAATATATAGCAGTTTGGATTCTCTGTGAGTAGTTTCT  450

seq1  AGATAAGAGGATGTGTGAAGCTCAGAGGGCAAAATTTAAGCCACAGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAGGATGTGTGAAGCTCAGAGGGCAAAATTTAAGCCACAGTGGA  500

seq1  TACAGGGACTAGAAATCACTGAGGACATGGAACATCTACAAAGAAAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGACTAGAAATCACTGAGGACATGGAACATCTACAAAGAAAAAGC  550

seq1  CTAGGCAGTGAGAAGAGCCAGCCTGAAGGAGAACCATGTGGTTTGATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGTGAGAAGAGCCAGCCTGAAGGAGAACCATGTGGTTTGATGGC  600

seq1  ATCAAGGTCTTAGAAGCTCACATTCTACTACCAATTCTCGTGACTCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGTCTTAGAAGCTCACATTCTACTACCAATTCTCGTGACTCCAGA  650

seq1  CAGACTGATGAGATTTAGTGTTTACTTTCATGGGCTTAGGTCTTGCCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGATGAGATTTAGTGTTTACTTTCATGGGCTTAGGTCTTGCCTAA  700

seq1  TTCTGCCCCCATTCTTTGTCCCATTTTTCCTTTTGGGAATGATGGTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCCCATTCTTTGTCCCATTTTTCCTTTTGGGAATGATGGTACTT  750

seq1  ACTCTGTGCAATTGTTTCTGTTTATATTTGCTTTATTTTATAGGAGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGCAATTGTTTCTGTTTATATTTGCTTTATTTTATAGGAGCTCA  800

seq1  CAACCAACATTGTCTGCCTTGATAGGGAGCCTCAGAGGACACTTTGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACATTGTCTGCCTTGATAGGGAGCCTCAGAGGACACTTTGAGTT  850

seq1  TGGAATTTTGAGAAATGTCCTTAGAAAAATACTAAATGCATTTTATATTA  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGAATTTTGAGAAATGTCCTTAG-AAAATACTAAATGCATTTTATATTA  899

seq1  TGATATAAAATTGAGCTTCTGAGGACCAGGGGTGGAAGGTTGTGTGGTTT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGATATAAAATTGAGCTTCTGAGGACCAGGGGTGGAA-GTTGTGTGGTTT  948

seq1  -GGATATGAAGGGTCCTATAAAGGCTCATGTTAAAGTCTTGATCTTAAGC  999
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGATATGAAGGGTCCTAT-AAGGCTCATGTTAAAGTCTTGATCTTAAGC  997

seq1  AGATGGCATTACTATGAAGTGACTGGATCGTGAAGGTGCTGGAGTTTTTA  1049
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGATGGCATTACTATGAAGTGACTGGATCGTGAAGGTGCTGGAG-TTTTA  1046

seq1  CTAGATTGGTTAATGCA-CGA-GTTCATAGCTGAATGGGTCTTTTGGGAA  1097
      ||||||||  ||||||| ||| |||||||||||||| |||||||| ||||
seq2  CTAGATTG--TAATGCACCGAGGTTCATAGCTGAAT-GGTCTTTT-GGAA  1092

seq1  CT-AGGCCTACTTGGGGGATGTAAGTCATCA  1127
      || ||||||||||||||||| ||||||||||
seq2  CTAAGGCCTACTTGGGGGAT-TAAGTCATCA  1122