BAC Information

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BAC

Clone NameB6Ng01-085O09
Chromosome1 (Build37)
Map Location 155,150,764 - 155,276,150
singlet/doubletdoublet
Overlap geneLamc1, EG667795, EG626058, 1700012A16Rik
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2
Downstream geneDhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085O09.bB6Ng01-085O09.g
ACCDH899444DH899445
length1,0441,135
definitionDH899444|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O09, 5' end.DH899445|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,150,764 - 155,151,817)(155,274,999 - 155,276,150)
sequence
gaattcttggaattgcctctttaaaagttcacctccaggaactccctgta
ctgagaaacaaagctaaagagctacacgtctggaaaacaacttcatagac
aggaaaaaaaaatgtcttcccatgttaaaagagaacaggagagaggtttt
ttttttttttttttccagaagggtcaaatatatcagtgacagaaaccgag
ttatttttagacagcaatgtggtctgctattatttccaagcaaaaactaa
tcttgagccgggcgtggtggtgcacacctttaatcccagcactcaggagg
cagaggcaggcggatttctgagttcgaggtcagcctggtctacagagtga
gttccaggacagccagggctatacagagaaatcctatctcgaaaaaccaa
aaaaaaaaaaaaaaaaacccaaaccaaaacaaaacaaaagaaacaaacaa
aaaaaggaaatctttctaaaggtgacgttagtttatgacttggttgccta
ggtatccaattgtatgtgaaaatgcatgggttgcttggcacatatttata
aaacaagaagagaagaacatggatggaaaggaaagcagtgtgtcttgggg
gcgggaggcaggaccattgcgataccccagttggtaaaggcactggccac
acccagccggaggtcctgcttgtgatctttgagggtcatgtggtagaaag
gaaactgaaaatgatcctctgacagacacttgtgtgctaaggcgagcgta
atccacacatattacaaaatgaataaaactattttttggccaggcataat
gggacatctcatcaatcccagcacttgaaaggcagagtcaggtggatcct
ctgaattcaaggccagcttggactacatagcaagttccggaggagccaag
ctatataacagaccctatctctaatatgataattaataactcatactatt
aattatataataataataatgtttttaaaaacctatcgtctcaactcatt
cctgctccagaactccctattctctaggattgttgtaggaactg
gaattctctatgtaggccaggctgcctgtcgcactagtgctgggagtgca
tgcctggcaggaaaggcatttttgttatttttacagtatttaggtgactg
aagctggctgatgactactattcagtgccaccggatcctagttgaccatc
aattgtccccataaacctatgccagtgctcatctttgtccactcccacac
tcgccagtttgatatctgcctgagtactacagttccagatgaacagaatc
acagctcagccataacaggagctgctagcttcattcaatggacaacgcga
ggaaaacatacctcgaccaggatcccaacaaaagggatggacgcctcttc
atatttctcaaagaagagctccgggttactcttccagactccgagccatc
tgtccttcgctttcagcttctccaacaggtatctactcatagcttcctct
gcatcttctgcctaatgagagacaagacacagctgtgcagatgaccacga
aaggcagggagccaggagaggcagggagcctggaggggcagggggcctgg
agaggcagggagcctggagggccagggggcctggaggggcagggagcctg
gaggggcagggagcctggaggggcagctctgagggtgaggagctgcagag
ctagtgtgagatccaagttcaattcccagaacccccataaaggtggatgg
agacaaacatgtgactcctaccagctttcccaacctccacagtatgccgc
gacacccctcccccctctcttaaacacacacacacacacaagcacagata
attttttaattggataaatcttttaaataaatacatagacgcttatacaa
ttttttacctgaaaatataaccaatattgccttaaacagcgaaaaaattt
aaaaacatcatatattttaactaaactatacttaacagtatagttacagt
actcataagttgtgaaaaaaatagagatcttttcactcatgccacactcc
agtagcttattatccaccgggcagaggatgtggaatcttgggaaatcaca
cagcattttaacacaacctaggaagtttgatgaactttaaaaaaaatggc
tttgatccttaaacgtcggactcaggcctccatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155150764_155151817
seq2: B6Ng01-085O09.b_44_1087

seq1  GAATTCTTGGAATTGCCTCTTTAAAAGTCCACCTCCAGGAACTCCCTGTA  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCTTGGAATTGCCTCTTTAAAAGTTCACCTCCAGGAACTCCCTGTA  50

seq1  CTGAGAAACAAAGCTAAAGAGCTACACGTCTGGAAAACAACTTCATAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAACAAAGCTAAAGAGCTACACGTCTGGAAAACAACTTCATAGAC  100

seq1  AGGAAAAAAAAATGTCTTCCCATGTTAAAAGAGAACAGGAGAGAGGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAAATGTCTTCCCATGTTAAAAGAGAACAGGAGAGAGGTTTT  150

seq1  TTTTTTTTTTTTTTCCAGAAGGGTCAAATATATCAGTGACAGAAACCGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTCCAGAAGGGTCAAATATATCAGTGACAGAAACCGAG  200

seq1  TTATTTTTAGACAGCAATGTGGTCTGCTATTATTTCCAAGCAAAAACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAGACAGCAATGTGGTCTGCTATTATTTCCAAGCAAAAACTAA  250

seq1  TCTTGAGCCGGGCGTGGTGGTGCACACCTTTAATCCCAGCACTCAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGCCGGGCGTGGTGGTGCACACCTTTAATCCCAGCACTCAGGAGG  300

seq1  CAGAGGCAGGCGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAGAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAGAGTGA  350

seq1  GTTCCAGGACAGCCAGGGCTATACAGAGAAATCCTATCTCGAAAAACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGCCAGGGCTATACAGAGAAATCCTATCTCGAAAAACCAA  400

seq1  AAAAAAAAAAAAAAAAACCCAAACCAAAACAAAACAAAAGAAACAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAACCCAAACCAAAACAAAACAAAAGAAACAAACAA  450

seq1  AAAAAGGAAATCTTTCTAAAGGTGACGTTAGTTTATGACTTGGTTGCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAATCTTTCTAAAGGTGACGTTAGTTTATGACTTGGTTGCCTA  500

seq1  GGTATCCAATTGTATGTGAAAATGCATGGGTTGCTTGGCACATATTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCAATTGTATGTGAAAATGCATGGGTTGCTTGGCACATATTTATA  550

seq1  AAACAAGAAGAGAAGAACATGGATGGAAAGGAAAGCAGTGTGTCTTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAAGAGAAGAACATGGATGGAAAGGAAAGCAGTGTGTCTTGGGG  600

seq1  GCGGGAGGCAGGACCATTGCGATACCCCAGTTGGTAAAGGCACTGGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGGCAGGACCATTGCGATACCCCAGTTGGTAAAGGCACTGGCCAC  650

seq1  ACCCAGCCGGAGGTCCTGCTTGTGATCTTTGAGGGTCATGTGGTAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCGGAGGTCCTGCTTGTGATCTTTGAGGGTCATGTGGTAGAAAG  700

seq1  GAAACTGAAAATGATCCTCTGACAGACACTTGTGTGCTAAGGCGAGCGT-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAACTGAAAATGATCCTCTGACAGACACTTGTGTGCTAAGGCGAGCGTA  750

seq1  ATCCACACATA-TACAAAATGAATAAAACTA-TTTTTGGCCAGGCATAAT  797
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  ATCCACACATATTACAAAATGAATAAAACTATTTTTTGGCCAGGCATAAT  800

seq1  GGGACATCTCATCAATCCCAGCACTTGAGAGGCAGAGTCAGGTGGAT-CT  846
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  GGGACATCTCATCAATCCCAGCACTTGAAAGGCAGAGTCAGGTGGATCCT  850

seq1  CTGAATTCAAGGCCAGCTTGGACTACATAGCAAGTTCCGGAAGAGCCAGA  896
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  CTGAATTCAAGGCCAGCTTGGACTACATAGCAAGTTCCGGAGGAGCCA-A  899

seq1  GCTATATAAACAGACCCTATCTCTAAATAAATAAATAAATAAAT-AAATA  945
      ||||||| |||||||||||||||| ||||    ||| ||||| | | |  
seq2  GCTATAT-AACAGACCCTATCTCT-AATATGATAATTAATAACTCATACT  947

seq1  AATAAATAAATAAATAAATAAATAAATGTTTTTTAAAAAACCTATCGCTC  995
      | ||| || ||||   |||||   |||||||||  |||||||||||| ||
seq2  ATTAATTATATAA--TAATAA--TAATGTTTTT--AAAAACCTATCG-TC  990

seq1  TCAAACTCATCCCTGCTCCAGAACCTTCCTTATCTCTAGGGATTGTTGCT  1045
      || ||||||| |||||||||||| || |||  |||||| ||||||||| |
seq2  TC-AACTCATTCCTGCTCCAGAA-CTCCCTATTCTCTA-GGATTGTTG-T  1036

seq1  AGGAGACTG  1054
      |||| ||||
seq2  AGGA-ACTG  1044

seq1: chr1_155274999_155276150
seq2: B6Ng01-085O09.g_72_1206 (reverse)

seq1  GGATGGAAGGCCTGAGTCCGAACGTTTTAAGGAGTCAATGCCATTTTTTT  50
      |||||| ||||||||||||| ||| |||||||| |||| |||||||||||
seq2  GGATGG-AGGCCTGAGTCCG-ACG-TTTAAGGA-TCAAAGCCATTTTTTT  46

seq1  TAAAGTTCATCAAACATTCCTATG-TGTGTTAAAACTGCTGTTGTGATTT  99
      ||||||||||||||| |||||| | |||||||||| ||||| ||||||||
seq2  TAAAGTTCATCAAAC-TTCCTAGGTTGTGTTAAAA-TGCTG-TGTGATTT  93

seq1  -CCAAGATCACACTCCTTCTGCCCGGTGGATTAATAAGCTACCTGGAGAT  148
       |||||||  |||  | ||||||||||||| |||||||||| |||||| |
seq2  CCCAAGATTCCACATCCTCTGCCCGGTGGA-TAATAAGCTA-CTGGAG-T  140

seq1  GTGGCATGAGTGAAAAGATCTCCTTATTTTTTTTCAC-ACTTATGAGTTA  197
      ||||||||||||||||||||||  || |||||||||| ||||||||| ||
seq2  GTGGCATGAGTGAAAAGATCTC--TA-TTTTTTTCACAACTTATGAG-TA  186

seq1  CTGTTAACTATACTGTTAAGTATAGTTTTAGTTTAAAATATATGATGTTT  247
      ||| ||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  CTG-TAACTATACTGTTAAGTATAG-TTTAG-TTAAAATATATGATGTTT  233

seq1  TTTAGATTTTTTTCGCTGTTTAAGGCAATATTGGTTATATTTTCAGGTAA  297
      ||   | |||||||||||||||||||||||||||||||||||||||||||
seq2  TT--AAATTTTTTCGCTGTTTAAGGCAATATTGGTTATATTTTCAGGTAA  281

seq1  AAAATTGTTATAAGCGTCTATGTATTTATTTAAAAGATTTATCCAATTAA  347
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTG-TATAAGCGTCTATGTATTTATTTAAAAGATTTATCCAATTAA  330

seq1  AAAATTATCTGTGCTTGTGTGTGTGTGTGTGTTTAAGAGAGGGGGGAGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATCTGTGCTTGTGTGTGTGTGTGTGTTTAAGAGAGGGGGGAGGG  380

seq1  GTGTCGCGGCATACTGTGGAGGTTGGGAAAGCTGGTAGGAGTCACATGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGCGGCATACTGTGGAGGTTGGGAAAGCTGGTAGGAGTCACATGTT  430

seq1  TGTCTCCATCCACCTTTATGGGGGTTCTGGGAATTGAACTTGGATCTCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCATCCACCTTTATGGGGGTTCTGGGAATTGAACTTGGATCTCAC  480

seq1  ACTAGCTCTGCAGCTCCTCACCCTCAGAGCTGCCCCTCCAGGCTCCCTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTCTGCAGCTCCTCACCCTCAGAGCTGCCCCTCCAGGCTCCCTGC  530

seq1  CCCTCCAGGCTCCCTGCCCCTCCAGGCCCCCTGGCCCTCCAGGCTCCCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGGCTCCCTGCCCCTCCAGGCCCCCTGGCCCTCCAGGCTCCCTG  580

seq1  CCTCTCCAGGCCCCCTGCCCCTCCAGGCTCCCTGCCTCTCCTGGCTCCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCAGGCCCCCTGCCCCTCCAGGCTCCCTGCCTCTCCTGGCTCCCT  630

seq1  GCCTTTCGTGGTCATCTGCACAGCTGTGTCTTGTCTCTCATTAGGCAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCGTGGTCATCTGCACAGCTGTGTCTTGTCTCTCATTAGGCAGAA  680

seq1  GATGCAGAGGAAGCTATGAGTAGATACCTGTTGGAGAAGCTGAAAGCGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAGGAAGCTATGAGTAGATACCTGTTGGAGAAGCTGAAAGCGAA  730

seq1  GGACAGATGGCTCGGAGTCTGGAAGAGTAACCCGGAGCTCTTCTTTGAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATGGCTCGGAGTCTGGAAGAGTAACCCGGAGCTCTTCTTTGAGA  780

seq1  AATATGAAGAGGCGTCCATCCCTTTTGTTGGGATCCTGGTCGAGGTATGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGAGGCGTCCATCCCTTTTGTTGGGATCCTGGTCGAGGTATGT  830

seq1  TTTCCTCGCGTTGTCCATTGAATGAAGCTAGCAGCTCCTGTTATGGCTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCGCGTTGTCCATTGAATGAAGCTAGCAGCTCCTGTTATGGCTGA  880

seq1  GCTGTGATTCTGTTCATCTGGAACTGTAGTACTCAGGCAGATATCAAACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATTCTGTTCATCTGGAACTGTAGTACTCAGGCAGATATCAAACT  930

seq1  GGCGAGTGTGGGAGTGGACAAAGATGAGCACTGGCATAGGTTTATGGGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGTGTGGGAGTGGACAAAGATGAGCACTGGCATAGGTTTATGGGGA  980

seq1  CAATTGATGGTCAACTAGGATCCGGTGGCACTGAATAGTAGTCATCAGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGATGGTCAACTAGGATCCGGTGGCACTGAATAGTAGTCATCAGCC  1030

seq1  AGCTTCAGTCACCTAAATACTGTAAAAATAACAAAAATGCCTTTCCTGCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGTCACCTAAATACTGTAAAAATAACAAAAATGCCTTTCCTGCC  1080

seq1  AGGCATGCACTCCCAGCACTAGTGCGACAGGCAGCCTGGCCTACATAGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCACTCCCAGCACTAGTGCGACAGGCAGCCTGGCCTACATAGAG  1130

seq1  AATTC  1152
      |||||
seq2  AATTC  1135