BAC Information

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BAC

Clone NameB6Ng01-086A03
Chromosome1 (Build37)
Map Location 57,842,292 - 58,025,452
singlet/doubletdoublet
Overlap gene2810022L02Rik, Kctd18
Upstream geneSatb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
Downstream geneSgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086A03.bB6Ng01-086A03.g
ACCDH899520DH899521
length1,192591
definitionDH899520|Mus musculus domesticus DNA, BAC clone: B6Ng01-086A03, 5' end.DH899521|Mus musculus domesticus DNA, BAC clone: B6Ng01-086A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,024,232 - 58,025,452)(57,842,292 - 57,842,881)
sequence
gaattcagttttggacattttatttgtttttgtgtacatgggtgttttgc
ctgccttgtttctgtgtgctgtagatgggcagtgcccctagagactggaa
gaggttatcagatcaccggagtcacagactatcattgtaaggcatatggt
actgagaattaaacctgggtcttttgtaaaaatagccatgttttcttaac
cacttagccatctctctagcccttggcataaatagaattctgatctcagt
taatgatatattacttaattatatagttaactacaatgtaatgattccag
ttatccttaatttctgctctttgtttctttaatctccaaagttttatttc
aagttcctcagtgtataccttaagggaaattttgtaggatcatacatggc
ctgtcatttattgtgccacatgatttgtgtgtgttaccttaattactcct
ctggagctctttggatcattgctgcctccatcttatggataaggaaacaa
gaaagtgattataaacgatgtatccaagaagccaaagattataagtggta
aaaccttttgtctgtgttacacactgatttctgcagtctagatggttcct
tcagacttgttaaaaacacgtgagtgccaaaaaatcataagcttgtcttg
cctttgctttacctgtgcctgcctgtgcattatcttgtataattctttaa
acagtcactttatcagctgtgatttatattactgtctatttataaaaccc
caggcacagattttcccaactcagcatatctcagacgcctttcataccac
gtgaaatagagtctgtgtgattgtattgaaatatattagcctgtccattt
gttttcaacaaggtatttgtcctttgtttttacagaggtctgggactgct
actgtttcaaagtttctgaatgcttaagcagaacttcagcatcgaaggag
caatggcagtcatgaagcagaagacgtgctagatatctttcgctgatgtg
ggtggctgcatctacacagcccgcgagaatctttgtgccgctttaagatt
ctatgctggcatcttgtttatgggtcgttcctctaaaacagatgattctg
gtaatgtctaagtctgagcctgagcgaatgctccattaaggtgggagtta
ttcatctttgattatattggtggaatgatatatagcctacta
gaattcctggttggacatttggaagtcttggtttgatgcctggctgtatg
ggccagatcaaggcatttagccttcctgaactttgattccgtcatgcact
aagcaaaattagcaatatctacctttatgttataatttcattatgactat
gtaagacaatagaaagtcccagggcctcaaacctgcatgctatgaaagtg
gtgactaaggcttgcttcttgacttgaacagttttatagcccttcccaga
ggctgacaaaaagagaataagaacacagaccaaggagcccaagttctgcc
ctattcgttggtcaagaaaggaccagaaggaagctgccatcacatcttag
ttaagtccaattctggataatagtttacatttgtgaaaattctcatctgg
aattgtgggtgcagtgtgaagccatgggggggggggggtctgtttacatc
ctctgccaggataacctgacagtaaaaaaagcaggcttttgaatcctggc
atagtcaggagcactgtcttcaaaataaactggaggtttatctttgctga
taaattaaaacaaaggtagtcaccaaaaataccctagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58024232_58025452
seq2: B6Ng01-086A03.b_42_1233 (reverse)

seq1  TAGTAGGCTAATATAATACATTCCAACACAATTAATAAAATCAAA-AGGA  49
      ||||||||| |||||   ||||||| |      |||| ||||||| | ||
seq2  TAGTAGGCT-ATATA--TCATTCCACC------AATATAATCAAAGATGA  41

seq1  ATTTAAAATAGACTCCCACTTTAAT-GAGCATTCGCTCAGGCTCAGACTT  98
      ||         |||||||| ||||| |||||||||||||||||||||| |
seq2  AT--------AACTCCCACCTTAATGGAGCATTCGCTCAGGCTCAGAC-T  82

seq1  TAGACATTTACCAGATTCATCTGTTTTTAGAGGGAAACGACCACTAAACA  148
      |||||| |||||||| ||||||| |||||||||  |||||||  ||||||
seq2  TAGACA-TTACCAGAATCATCTG-TTTTAGAGG--AACGACCCATAAACA  128

seq1  TAGATGCCAGCATAGAATCCTTAAAGCGGCACAAAGACTCTCGCCGGGCT  198
       ||||||||||||||||| |||||||||||||||||| ||||| ||||||
seq2  -AGATGCCAGCATAGAAT-CTTAAAGCGGCACAAAGATTCTCG-CGGGCT  175

seq1  GTGTAGATGCAGCCACCCACATTCAGCCGAAGGATATCTAGCACGTCTTC  248
      ||||||||||||||||||||| |||| |||| ||||||||||||||||||
seq2  GTGTAGATGCAGCCACCCACA-TCAG-CGAAAGATATCTAGCACGTCTTC  223

seq1  TGCTTCATGGCCTGCCATTGCTCCCTTCGATGCCTGAAGTTCTGCCTTAA  298
      |||||||| | ||||||||||| ||||||||| ||||||||||| |||||
seq2  TGCTTCAT-GACTGCCATTGCT-CCTTCGATG-CTGAAGTTCTG-CTTAA  269

seq1  GCATTCAGAAACTTTGAAACAGTAGCAGTCCCAGACCTCTGTAAAAACAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGAAACTTTGAAACAGTAGCAGTCCCAGACCTCTGTAAAAACAA  319

seq1  AGGACAAATACCTTGTTGAAAACAAATGGACAGGCTAATATATTTCAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAATACCTTGTTGAAAACAAATGGACAGGCTAATATATTTCAATA  369

seq1  CAATCACACAGACTCTATTTCACGTGGTATGAAAGGCGTCTGAGATATGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACACAGACTCTATTTCACGTGGTATGAAAGGCGTCTGAGATATGC  419

seq1  TGAGTTGGGAAAATCTGTGCCTGGGGTTTTATAAATAGACAGTAATATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGGAAAATCTGTGCCTGGGGTTTTATAAATAGACAGTAATATAA  469

seq1  ATCACAGCTGATAAAGTGACTGTTTAAAGAATTATACAAGATAATGCACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCTGATAAAGTGACTGTTTAAAGAATTATACAAGATAATGCACA  519

seq1  GGCAGGCACAGGTAAAGCAAAGGCAAGACAAGCTTATGATTTTTTGGCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCACAGGTAAAGCAAAGGCAAGACAAGCTTATGATTTTTTGGCAC  569

seq1  TCACGTGTTTTTAACAAGTCTGAAGGAACCATCTAGACTGCAGAAATCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGTTTTTAACAAGTCTGAAGGAACCATCTAGACTGCAGAAATCAG  619

seq1  TGTGTAACACAGACAAAAGGTTTTACCACTTATAATCTTTGGCTTCTTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACACAGACAAAAGGTTTTACCACTTATAATCTTTGGCTTCTTGG  669

seq1  ATACATCGTTTATAATCACTTTCTTGTTTCCTTATCCATAAGATGGAGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCGTTTATAATCACTTTCTTGTTTCCTTATCCATAAGATGGAGGC  719

seq1  AGCAATGATCCAAAGAGCTCCAGAGGAGTAATTAAGGTAACACACACAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGATCCAAAGAGCTCCAGAGGAGTAATTAAGGTAACACACACAAA  769

seq1  TCATGTGGCACAATAAATGACAGGCCATGTATGATCCTACAAAATTTCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGCACAATAAATGACAGGCCATGTATGATCCTACAAAATTTCCC  819

seq1  TTAAGGTATACACTGAGGAACTTGAAATAAAACTTTGGAGATTAAAGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTATACACTGAGGAACTTGAAATAAAACTTTGGAGATTAAAGAAA  869

seq1  CAAAGAGCAGAAATTAAGGATAACTGGAATCATTACATTGTAGTTAACTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCAGAAATTAAGGATAACTGGAATCATTACATTGTAGTTAACTA  919

seq1  TATAATTAAGTAATATATCATTAACTGAGATCAGAATTCTATTTATGCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAAGTAATATATCATTAACTGAGATCAGAATTCTATTTATGCCA  969

seq1  AGGGCTAGAGAGATGGCTAAGTGGTTAAGAAAACATGGCTATTTTTACAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAGAGAGATGGCTAAGTGGTTAAGAAAACATGGCTATTTTTACAA  1019

seq1  AAGACCCAGGTTTAATTCTCAGTACCATATGCCTTACAATGATAGTCTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAGGTTTAATTCTCAGTACCATATGCCTTACAATGATAGTCTGT  1069

seq1  GACTCCGGTGATCTGATAACCTCTTCCAGTCTCTAGGGGCACTGCCCATC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCGGTGATCTGATAACCTCTTCCAGTCTCTAGGGGCACTGCCCATC  1119

seq1  TACAGCACACAGAAACAAGGCAGGCAAAACACCCATGTACACAAAAACAA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACACAGAAACAAGGCAGGCAAAACACCCATGTACACAAAAACAA  1169

seq1  ATAAAATGTCCAAAACTGAATTC  1221
      |||||||||||||||||||||||
seq2  ATAAAATGTCCAAAACTGAATTC  1192

seq1: chr1_57842292_57842881
seq2: B6Ng01-086A03.g_67_657

seq1  GAATTCCTGGTTGGACATTTGGAAGTCTTGGTTTGATGCCTGGCTGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTTGGACATTTGGAAGTCTTGGTTTGATGCCTGGCTGTATG  50

seq1  GGCCAGATCAAGGCATTTAGCCTTCCTGAACTTTGATTCCGTCATGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATCAAGGCATTTAGCCTTCCTGAACTTTGATTCCGTCATGCACT  100

seq1  AAGCAAAATTAGCAATATCTACCTTTATGTTATAATTTCATTATGACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAATTAGCAATATCTACCTTTATGTTATAATTTCATTATGACTAT  150

seq1  GTAAGACAATAGAAAGTCCCAGGGCCTCAAACCTGCATGCTATGAAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACAATAGAAAGTCCCAGGGCCTCAAACCTGCATGCTATGAAAGTG  200

seq1  GTGACTAAGGCTTGCTTCTTGACTTGAACAGTTTTATAGCCCTTCCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAAGGCTTGCTTCTTGACTTGAACAGTTTTATAGCCCTTCCCAGA  250

seq1  GGCTGACAAAAAGAGAATAAGAACACAGACCAAGGAGCCCAAGTTCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACAAAAAGAGAATAAGAACACAGACCAAGGAGCCCAAGTTCTGCC  300

seq1  CTATTCGTTGGTCAAGAAAGGACCAGAAGGAAGCTGCCATCACATCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCGTTGGTCAAGAAAGGACCAGAAGGAAGCTGCCATCACATCTTAG  350

seq1  TTAAGTCCAATTCTGGATAATAGTTTACATTTGTGAAAATTCTCATCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCCAATTCTGGATAATAGTTTACATTTGTGAAAATTCTCATCTGG  400

seq1  AATTGTGGGTGCAGTGTGAAGCCATGGGGGGGGGGGGGTCTGTTTACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGGTGCAGTGTGAAGCCATGGGGGGGGGGGGGTCTGTTTACATC  450

seq1  CTCTGCCAGGATAACCTGACAGTAAGCAAAGCAGGCTTTTGAATCCTGGC  500
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  CTCTGCCAGGATAACCTGACAGTAAAAAAAGCAGGCTTTTGAATCCTGGC  500

seq1  ATAGTCAGGTGCACTGTCGTCAAAATAAACTGGAGGTTTTTCTTTGCTGA  550
      ||||||||| |||||||| |||||||||||||||||||| ||||||||||
seq2  ATAGTCAGGAGCACTGTCTTCAAAATAAACTGGAGGTTTATCTTTGCTGA  550

seq1  TAAATTACAAACAAAGGAAGTCA-CTAAAATACCCT-GAAAA  590
      ||||||| ||||||||| ||||| | |||||||||| |||||
seq2  TAAATTA-AAACAAAGGTAGTCACCAAAAATACCCTAGAAAA  591