BAC Information

Click to search

BAC

Clone NameB6Ng01-086D11
Chromosome1 (Build37)6 (Build37)
Map Location 50,832,191 - 50,832,71982,690,656 - 82,691,198
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086D11.bB6Ng01-086D11.g
ACCDH899673DH899674
length1,000973
definitionDH899673|Mus musculus domesticus DNA, BAC clone: B6Ng01-086D11, 5' end.DH899674|Mus musculus domesticus DNA, BAC clone: B6Ng01-086D11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,832,191 - 50,832,719)(82,690,656 - 82,691,198)
sequence
gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatccgatttgggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgctttgcagaagctttgcaattttat
gaggtcccatttatcgattcttgatcttacagcacaagccattgctgttc
tattcaggaattttttccctgtacccatatcttcgaggcttttccctact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttaat
ccacttaaatttgaccttagtacaaggagatagaaatggatcaattcaca
ttcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatctctgggtcttcaattctgttccattgat
ctacttgtctgtcactataccagtaccatgcagttttgatcacaattgct
ctgtagtacagttttaggcccggcatggtgattccaccagaggttctttt
atccttgagaagagtctaaggctgatcttcaataacaaaataaataatag
aaagccaacattcacgtggaaactgaacaacactcttctcaatgatacct
tggtcaaggaaggaataaagaaagaaattaaggactttttggagtttaat
gaaaatgaagccacaacatactcaaacttatgggacacaatgaaagcatt
cctaagaggaaaactcatagctctgagtgcctccaaaagaaactagagag
agcacacattaacagcttgacaacacacctaaaaggtctagagaaaagga
gcaaattcacccagaggagtagaggcaggaaatatcaaactcagggtgaa

gaattctgcagtgctgaagcctgaagccgggttgctacttatcagaaata
gttgctgtgttggaactttgggtttttgctttttgagacagcttctcctg
tgaccctagctgattttggactcactttctgagatgaccttgactttttt
tttttttccttctgagacagggtttctctgtgtagccctggctgtgctgg
aactcaatttgtagaccaggctggcctcaattcccagagatctgcctgcc
tttgcctccttagtgctgggattaaaggcatgcgtcccctgtctcccatt
tatctattcacgttatgagcatcagtgacttttttgcatgtctttaagtg
cgctgtatgcatgttggggaggccagaagagggcccctgaaactagaatt
acacatagtcctgagtgctgggaatcaaattttgttctgccagagtggtc
ctcactctgaaccgtagaaccatttctctaatgtttgagatagggtctca
ccgtgtagcctaggctagcctgaaacttgatcctcttgcctcaacctcct
aaatgttggcatagctggtgtctggaaccacgttgccagtgctcctttac
tatgagcaagtcccatcttgctgattgagggcccggttttcagtttctgt
taggtgttctgtgccacacccctgctgggcctcctgggtggtgtggccca
tcctagttagtacacagcccattatgcttcctgtctgttagactctgatc
ctttatgagacatcaaggggttttctttacccagaagatattccgaaagg
gcttggttttttctgtcacgtgggcccaggcaaaaagagcaatcgctaaa
gaagagtgccacctagtggtggaaattaaatactggacttccttaagtgc
tgggcctgatttcttcctttggcttcaacccgttcaccactagattcttt
ttgtttttgttgtttttgagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50832191_50832719
seq2: B6Ng01-086D11.b_45_573 (reverse)

seq1  ACCCAGAAATGAACCCACACATCTATGGTCACTTAATTTTTGACAGGGGA  50
      ||||||| ||||||||||||| |||||||||||| || ||||||| ||||
seq2  ACCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGA  50

seq1  GCTAAAGCCATTCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTG  100
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTG  100

seq1  GCACAACTGGCGGTTATCATGCAGAAGAATGTGAAATGATTCATTCCTAT  150
      ||||||||||||||||||||| ||||||||||||| |||| |||| ||||
seq2  GCACAACTGGCGGTTATCATGTAGAAGAATGTGAATTGATCCATTTCTAT  150

seq1  CTCCTTGTAGTAATGCCAAATCTAAGTGGATTAAGGAACTCCACTTAAAA  200
      ||||||||| ||| | ||||| |||||||||||||||||||||| |||||
seq2  CTCCTTGTACTAAGGTCAAATTTAAGTGGATTAAGGAACTCCACATAAAA  200

seq1  CCAGAGACACTGAAACTTATAGAGGAGAAGGTGGGGAAAAGCCTCCAAGA  250
      ||||||||||||||||||||||||||||| || |||||||||||| ||||
seq2  CCAGAGACACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGA  250

seq1  TATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTG  300
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  TATGGGTACAGGGAAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTG  300

seq1  TAAGATTGAGAATGGACAAATGGGAACTCATAAAGTTGCAAACCTTCTGT  350
      ||||||  ||||| || |||||||| |||||||| ||||||| |||||| 
seq2  TAAGATCAAGAATCGATAAATGGGACCTCATAAAATTGCAAAGCTTCTGC  350

seq1  AAGGCAAAAGACACCTTCAATAAGACAAAAAGGCCACCAACAGATTGGGA  400
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGA  400

seq1  GAGGATCTTTACCTATCCTAAATCAAATAGGGGACTAAGATCCAATATAT  450
       ||||||||||||||||| |||||  |||||||||||| |||||||||||
seq2  AAGGATCTTTACCTATCCCAAATCGGATAGGGGACTAATATCCAATATAT  450

seq1  ATAAAGAACTTAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAA  500
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  ATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAA  500

seq1  AATGGGGCTCAGAGCTGAACAATGAATTC  529
      |||||||||||||||||||||| ||||||
seq2  AATGGGGCTCAGAGCTGAACAAAGAATTC  529

seq1: chr6_82690656_82691198
seq2: B6Ng01-086D11.g_68_610 (reverse)

seq1  TGAGGCAAGAGGATCAAGTTTCAGGCTAGCCTAGGCTACACGGTGAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAAGAGGATCAAGTTTCAGGCTAGCCTAGGCTACACGGTGAGACC  50

seq1  CTATCTCAAACATTAGAGAAATGGTTCTACGGTTCAGAGTGAGGACCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCAAACATTAGAGAAATGGTTCTACGGTTCAGAGTGAGGACCACT  100

seq1  CTGGCAGAACAAAATTTGATTCCCAGCACTCAGGACTATGTGTAATTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAACAAAATTTGATTCCCAGCACTCAGGACTATGTGTAATTCTA  150

seq1  GTTTCAGGGGCCCTCTTCTGGCCTCCCCAACATGCATACAGCGCACTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGGGCCCTCTTCTGGCCTCCCCAACATGCATACAGCGCACTTAA  200

seq1  AGACATGCAAAAAAGTCACTGATGCTCATAACGTGAATAGATAAATGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCAAAAAAGTCACTGATGCTCATAACGTGAATAGATAAATGGGA  250

seq1  GACAGGGGACGCATGCCTTTAATCCCAGCACTAAGGAGGCAAAGGCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGGACGCATGCCTTTAATCCCAGCACTAAGGAGGCAAAGGCAGGC  300

seq1  AGATCTCTGGGAATTGAGGCCAGCCTGGTCTACAAATTGAGTTCCAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTGGGAATTGAGGCCAGCCTGGTCTACAAATTGAGTTCCAGCAC  350

seq1  AGCCAGGGCTACACAGAGAAACCCTGTCTCAGAAGGAAAAAAAAAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTACACAGAGAAACCCTGTCTCAGAAGGAAAAAAAAAAAAAG  400

seq1  TCAAGGTCATCTCAGAAAGTGAGTCCAAAATCAGCTAGGGTCACAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTCATCTCAGAAAGTGAGTCCAAAATCAGCTAGGGTCACAGGAGA  450

seq1  AGCTGTCTCAAAAAGCAAAAACCCAAAGTTCCAACACAGCAACTATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTCAAAAAGCAAAAACCCAAAGTTCCAACACAGCAACTATTTCT  500

seq1  GATAAGTAGCAACCCGGCTTCAGGCTTCAGCACTGCAGAATTC  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTAGCAACCCGGCTTCAGGCTTCAGCACTGCAGAATTC  543