BAC Information

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BAC

Clone NameB6Ng01-086E17
Chromosome5 (Build37)1 (Build37)
Map Location 98,621,041 - 98,622,08958,523,291 - 58,523,357
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8
Downstream geneFgf5, 1700007G11Rik, Bmp3, Prkg2, LOC100041680
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086E17.bB6Ng01-086E17.g
ACCDH899731DH899732
length1,0461,004
definitionDH899731|Mus musculus domesticus DNA, BAC clone: B6Ng01-086E17, 5' end.DH899732|Mus musculus domesticus DNA, BAC clone: B6Ng01-086E17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,621,041 - 98,622,089)(58,523,291 - 58,523,357)
sequence
gaattcagttagcagattaaacatccctggagatcagctttcacacactc
agtatttatcccggcctggtctcctttctaaagccagcagttaacttgca
ctctccttgagagcactgagtggaaacattaattgccctcctggaatgga
atgctacctttaatcttcctgggccggctctggagtcatactccccttat
gttctttctgcgacccactttggagccaggaggagaagcaaactaagact
tttccttctgtgacttccctggatttccaggctgggtgtcgctgtttgac
cacattttgtctttcttaaagatccaggggggatatcttgccagagagga
aatcagatcttaatttactttatttgagagaaaagaagtcatcaagtgct
tttgcaaaatagtaataatttaaaacttcactagcggaaaaaaaaaaaaa
aaaaacagaaaagattacttgagttgcacaagcaatttccaattttgtaa
tactggcacagctgcccagagatgacctcagagaaaaggtgtagctctgg
ggcaatagcccagattttaaccctggaaacaatccacactgagcacccca
ccattccccctcccccaaggacagaagtgatgtgtgcattcctcttctga
aacctgggaaatgggcacagggatgacatttagagctggtgactgagcat
tttggagagaagtggagagataaagaactgacagttactttaagttatta
ttattatttacaaactttgtatgcctatgtctcttattttacaaaaaaaa
aaacccaaaacctaaaaatcttaactatctcaattaagtatctgttcccc
caaagaacacacagaaaagggggctatgatagtgttttcaactctccatt
tttaaaggtaattatgataaatacagagtcctgtagctcacagcacacct
ttaaatactgaaaagctgaagccaaagccaggggttcctttgcatgatat
aacagacacatcagctcagaggcctcatgatggggggggggggggg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctaagat
tccacctcacaccagtgagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagttacaatttcctaaagacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaatcacccttggaaggagttacagagacaaagtttggagctgagacta
aagggtggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtactcaaggagctaaagggatctgcaaccctt
atag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_98621041_98622089
seq2: B6Ng01-086E17.b_43_1088 (reverse)

seq1  CTCCCCCCCCCCCCCATCATGAGGCCTCCTGAGCTGATGTGTCTGTTAAT  50
      | ||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  CCCCCCCCCCCCCCCATCATGAGGCCT-CTGAGCTGATGTGTCTGTT-AT  48

seq1  ATCATGCAAAGGAACCCCTGGCTTTGGCTTCAGCTTTTCAGTATTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCAAAGGAACCCCTGGCTTTGGCTTCAGCTTTTCAGTATTTAAAG  98

seq1  GTGTGCTGTGAGCTACAGGACTCTGTATTTATCATAATTACCTTTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGTGAGCTACAGGACTCTGTATTTATCATAATTACCTTTAAAAA  148

seq1  TGGAGAGTTGAAAACACCTATCATAGCCCCCTTTTCTGTGTGTTCTTTGG  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTGAAAACA-CTATCATAGCCCCCTTTTCTGTGTGTTCTTTGG  197

seq1  GGGAACAGATACTTAATTGAGATAGTTAAGATTTTTAGGTTTTGGGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGATACTTAATTGAGATAGTTAAGATTTTTAGGTTTTGGGTTTT  247

seq1  TTTTTTTGTAAAATAAGAGACATAGGCATACAAAGTTTGTAAATAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTAAAATAAGAGACATAGGCATACAAAGTTTGTAAATAATAAT  297

seq1  AATAACTTAAAGTAACTGTCAGTTCTTTATCTCTCCACTTCTCTCCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTAAAGTAACTGTCAGTTCTTTATCTCTCCACTTCTCTCCAAAA  347

seq1  TGCTCAGTCACCAGCTCTAAATGTCATCCCTGTGCCCATTTCCCAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTCACCAGCTCTAAATGTCATCCCTGTGCCCATTTCCCAGGTTT  397

seq1  CAGAAGAGGAATGCACACATCACTTCTGTCCTTGGGGGAGGGGGAATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGAATGCACACATCACTTCTGTCCTTGGGGGAGGGGGAATGGT  447

seq1  GGGGTGCTCAGTGTGGATTGTTTCCAGGGTTAAAATCTGGGCTATTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCTCAGTGTGGATTGTTTCCAGGGTTAAAATCTGGGCTATTGCCC  497

seq1  CAGAGCTACACCTTTTCTCTGAGGTCATCTCTGGGCAGCTGTGCCAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTACACCTTTTCTCTGAGGTCATCTCTGGGCAGCTGTGCCAGTAT  547

seq1  TACAAAATTGGAAATTGCTTGTGCAACTCAAGTAATCTTTTCTGTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATTGGAAATTGCTTGTGCAACTCAAGTAATCTTTTCTGTTTTTT  597

seq1  TTTTTTTTTTTTCCGCTAGTGAAGTTTTAAATTATTACTATTTTGCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTCCGCTAGTGAAGTTTTAAATTATTACTATTTTGCAAAA  647

seq1  GCACTTGATGACTTCTTTTCTCTCAAATAAAGTAAATTAAGATCTGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGATGACTTCTTTTCTCTCAAATAAAGTAAATTAAGATCTGATTT  697

seq1  CCTCTCTGGCAAGATATCCCCCCTGGATCTTTAAGAAAGACAAAATGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGGCAAGATATCCCCCCTGGATCTTTAAGAAAGACAAAATGTGG  747

seq1  TCAAACAGCGACACCCAGCCTGGAAATCCAGGGAAGTCACAGAAGGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGCGACACCCAGCCTGGAAATCCAGGGAAGTCACAGAAGGAAAA  797

seq1  GTCTTAGTTTGCTTCTCCTCCTGGCTCCAAAGTGGGTCGCAGAAAGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTTTGCTTCTCCTCCTGGCTCCAAAGTGGGTCGCAGAAAGAACA  847

seq1  TAAGGGGAGTATGACTCCAGAGCCGGCCCAGGAAGATTAAAGGTAGCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGAGTATGACTCCAGAGCCGGCCCAGGAAGATTAAAGGTAGCATT  897

seq1  CCATTCCAGGAGGGCAATTAATGTTTCCACTCAGTGCTCTCAAGGAGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCAGGAGGGCAATTAATGTTTCCACTCAGTGCTCTCAAGGAGAGT  947

seq1  GCAAGTTAACTGCTGGCTTTAGAAAGGAGACCAGGCCGGGATAAATACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTAACTGCTGGCTTTAGAAAGGAGACCAGGCCGGGATAAATACTG  997

seq1  AGTGTGTGAAAGCTGATCTCCAGGGATGTTTAATCTGCTAACTGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGAAAGCTGATCTCCAGGGATGTTTAATCTGCTAACTGAATTC  1046

seq1: chr1_58523291_58523357
seq2: B6Ng01-086E17.g_1004_1070 (reverse)

seq1  CTAT-AGGGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCC  49
      |||| ||||||||||| ||||| ||||||||| |||||||||||||||||
seq2  CTATAAGGGTTGCAGATCCCTTTAGCTCCTTGAGTACTTTCTCTAGCTCC  50

seq1  TCCATTGGGGGCCCTGTG  67
      ||||||||| | ||||||
seq2  TCCATTGGGAG-CCTGTG  67