BAC Information

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BAC

Clone NameB6Ng01-086H23
Chromosome1 (Build37)
Map Location 58,864,148 - 59,051,229
singlet/doubletdoublet
Overlap geneCasp8, EG667419, Trak2, Als2cr2
Upstream gene2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431
Downstream gene4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086H23.bB6Ng01-086H23.g
ACCDH899878DH899879
length9141,200
definitionDH899878|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H23, 5' end.DH899879|Mus musculus domesticus DNA, BAC clone: B6Ng01-086H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,050,318 - 59,051,229)(58,864,148 - 58,865,308)
sequence
gctccacggcgacactggctgcagtgacgctgatggcctgttataagcag
gtggcaacaggggaagtatggaatcctggctttcttctttcatctgttaa
agaaacttaaaatagtgacatgggcacagagactcaacacaaattttata
agcaataaataacttttaaagaaattttaaaactttaaaattatttttag
gtcttttccttttaaatgcttctagttctgacaatcagagaaaaccaaag
acttaaaagctaaataaactaattttaagcagaattattctgccctgcca
ttatttctaggtaagacagacaccagttttaagttaatgaaaatatagtg
tgtgtaacatatgttatttttactgctttgtttttgaagaataaaaatct
tttaaatattctatatataattaaggccactagatggctcaccaggcaaa
ggtgccaagggtgttttacaccggtacttgaaaatctaagctctatcctg
gggtccacacaatggagtgagagggtgacttccacaagtgtccttatgac
acattcatgaacatacaccatgtacacacacacacacacacacacacaca
cacacacacacacacaaataagcctaaaattaactactaaaaatgttctt
attttaattctattttatagggaagttattattaaattttttgtaaccca
agtgtcctatgaagccaactaataaaggcctttaaaaataatattttaaa
atatttaaaacaatggataatggaccagctcacctgcttgaagaatacat
gggacaacaaactgcttgctgatggcctgaaatttttggaaaagttatta
gaaaatctaacatcagaaaatgtgtgtatgtgtacattattgtggtttgt
gtgtgtgtgtatgt
gaattccagaacttttttccttttttccttttttccttttccttttcctc
ccctcctctcctctccctcccctttttccttttctccttttcttttcttt
ttcttctcttttctttcttttctttctcgtcgtactgagtcctgcctctc
tggggtacccaggaacctgggaggggtcagggcaaagtccgaatcaggga
gtccacaatgattcctggtcttctctctggcgtaccatcccagggagtca
ggaactggtctgcggtctttgcttctcctcagggcatctttgtgacaagc
aggagaggggagatggagccccacatgagcagaattcagtctgattagga
gtgaggggctggagaggaggcagccttcttctggagtcttaggcatggct
ccttagtcaaaggccttcttcttgggtgatccttaatggagcagctttct
gagacaatccttgcttgttttttattgctttatttgatggtggatgtaaa
tgcgtacactttattcgggatgaccaaggggttatataccttttgggggc
aggatatccaggaagggaagctcattggctgaaggctcaaggctatctag
acacctcattaacatgaagaagaattccaagtgttatgctatgtgactga
ctgtctggtcttctcagtggggtgtagtggttacatgttgtagagcaggt
acagagacaggtagggaaatggctccattcctgccaccaaatctctgaga
ttcctggtttgagctcattcagccttaaattcttatgcctgtctggtagt
gcattcccacatgttcctacattctaacgtttttcctcctttcttgtggt
tcttctatttctctccctacctgggacccctggcttgggatcagaagtcc
agcctttcctgtcttcccttgcccagtcataggcttgatcatcattttta
ttaaccttatcagagaataattggagggatattcttttacataacattga
cacaggagaatagttcaacaattcataacaaaaggctaggtgttcatact
gttaaaccagaattttcctgggtcataagaaattcagccatcacactagt
aagcccaccacaccattttggttggggaaggttttcctttcatttttttt
tttttttttccaattgtatttttttctggcctctcttttatcaacccagg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59050318_59051229
seq2: B6Ng01-086H23.b_57_970 (reverse)

seq1  ACATACACACACACACAAA-CACAATAATGTACACATACACACATTTTCT  49
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACATACACACACACACAAACCACAATAATGTACACATACACACATTTTCT  50

seq1  GATGTTAGATTTTCTAATAACTTTTCCAAAAATTTCAGGCCATCAGCAAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGATTTTCTAATAACTTTTCCAAAAATTTCAGGCCATCAGCAAG  100

seq1  CAGTTTGTTGTCCCATGTATTCTTCAAGCAGGTGAGCTGGTCCATTATCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTTGTCCCATGTATTCTTCAAGCAGGTGAGCTGGTCCATTATCC  150

seq1  ATTGTTTTAAATATTTTAAAATATTATTTTTAAAGGCCTTTATTAGTTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTAAATATTTTAAAATATTATTTTTAAAGGCCTTTATTAGTTGG  200

seq1  CTTCATAGGACACTTGGGTTACAAAAAATTTAATAATAACTTCCCTATAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGGACACTTGGGTTACAAAAAATTTAATAATAACTTCCCTATAA  250

seq1  AATAGAATTAAAATAAGAACATTTTTAGTAGTTAATTTTAGGCTTATTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATTAAAATAAGAACATTTTTAGTAGTTAATTTTAGGCTTATTTG  300

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGGTGT  350

seq1  ATGTTCATGAATGTGTCATAAGGACACTTGTGGAAGTCACCCTCTCACTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGAATGTGTCATAAGGACACTTGTGGAAGTCACCCTCTCACTC  400

seq1  CATTGTGTGGACCCCAGGATAGAGCTTAGATTTTCAAGTACCGGTGTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTGGACCCCAGGATAGAGCTTAGATTTTCAAGTACCGGTGTAAA  450

seq1  ACACCCTTGGCACCTTTGCCTGGTGAGCCATCTAGTGGCCTTAATTATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTGGCACCTTTGCCTGGTGAGCCATCTAGTGGCCTTAATTATAT  500

seq1  ATAGAATATTTAAAAGATTTTTATTCTTCAAAAACAAAGCAGTAAAAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATATTTAAAAGATTTTTATTCTTCAAAAACAAAGCAGTAAAAATA  550

seq1  ACATATGTTACACACACTATATTTTCATTAACTTAAAACTGGTGTCTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTTACACACACTATATTTTCATTAACTTAAAACTGGTGTCTGTC  600

seq1  TTACCTAGAAATAATGGCAGGGCAGAATAATTCTGCTTAAAATTAGTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAGAAATAATGGCAGGGCAGAATAATTCTGCTTAAAATTAGTTTA  650

seq1  TTTAGCTTTTAAGTCTTTGGTTTTCTC-GATTGTCAGAACTAGAAGCATT  698
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTAGCTTTTAAGTCTTTGGTTTTCTCTGATTGTCAGAACTAGAAGCATT  700

seq1  TAAAAGGAAAAGACCTAAAAATAATTTTAAAGTTTTAAAATTTCTTTAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAAAAGACCTAAAAATAATTTTAAAGTTTTAAAATTTCTTTAAA  750

seq1  AGTTATTTATTGCTTATAAAATTTGTGTTGAGTCTCTGTGCCCATGTCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTATTGCTTATAAAATTTGTGTTGAGTCTCTGTGCCCATGTCAC  800

seq1  TATTTTAAGTTTCTTTAACAGATGAAAGAAGAAAGCCAGGATTCCATACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGTTTCTTTAACAGATGAAAGAAGAAAGCCAGGATTCCATACT  850

seq1  TCCCCTGTTGCCACCTGCTTATAACAGGCCATCAGCGTCACTGCAGCCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTTGCCACCTGCTTATAACAGGCCATCAGCGTCACTGCAGCCAG  900

seq1  TGTCGCCGTGGAGC  912
      ||||||||||||||
seq2  TGTCGCCGTGGAGC  914

seq1: chr1_58864148_58865308
seq2: B6Ng01-086H23.g_68_1267

seq1  GAATTCCAGAACTTTTTTCCTTTTTTCCTTTTTTCCTTTTCCTTTTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACTTTTTTCCTTTTTTCCTTTTTTCCTTTTCCTTTTCCTC  50

seq1  CCCTCCTCTCCTCTCCCTCCCCTTTTTCCTTTTCTCCTTTTCTTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCTCCTCTCCCTCCCCTTTTTCCTTTTCTCCTTTTCTTTTCTTT  100

seq1  TTCTTCTCTTTTCTTTCTTTTCTTTCTCGTCGTACTGAGTCCTGCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTTTTCTTTCTTTTCTTTCTCGTCGTACTGAGTCCTGCCTCTC  150

seq1  TGGGGTACCCAGGAACCTGGGAGGGGTCAGGGCAAAGTCCGAATCAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTACCCAGGAACCTGGGAGGGGTCAGGGCAAAGTCCGAATCAGGGA  200

seq1  GTCCACAATGATTCCTGGTCTTCTCTCTGGCGTACCATCCCAGGGAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAATGATTCCTGGTCTTCTCTCTGGCGTACCATCCCAGGGAGTCA  250

seq1  GGAACTGGTCTGCGGTCTTTGCTTCTCCTCAGGGCATCTTTGTGACAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGTCTGCGGTCTTTGCTTCTCCTCAGGGCATCTTTGTGACAAGC  300

seq1  AGGAGAGGGGAGATGGAGCCCCACATGAGCAGAATTCAGTCTGATTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGGGAGATGGAGCCCCACATGAGCAGAATTCAGTCTGATTAGGA  350

seq1  GTGAGGGGCTGGAGAGGAGGCAGCCTTCTTCTGGAGTCTTAGGCATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGCTGGAGAGGAGGCAGCCTTCTTCTGGAGTCTTAGGCATGGCT  400

seq1  CCTTAGTCAAAGGCCTTCTTCTTGGGTGATCCTTAATGGAGCAGCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTCAAAGGCCTTCTTCTTGGGTGATCCTTAATGGAGCAGCTTTCT  450

seq1  GAGACAATCCTTGCTTGTTTTTTATTGCTTTATTTGATGGTGGATGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATCCTTGCTTGTTTTTTATTGCTTTATTTGATGGTGGATGTAAA  500

seq1  TGCGTACACTTTATTCGGGATGACCAAGGGGTTATATACCTTTTGGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTACACTTTATTCGGGATGACCAAGGGGTTATATACCTTTTGGGGGC  550

seq1  AGGATATCCAGGAAGGGAAGCTCATTGGCTGAAGGCTCAAGGCTATCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATCCAGGAAGGGAAGCTCATTGGCTGAAGGCTCAAGGCTATCTAG  600

seq1  ACACCTCATTAACATGAAGAAGAATTCCAAGTGTTATGCTATGTGACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCATTAACATGAAGAAGAATTCCAAGTGTTATGCTATGTGACTGA  650

seq1  CTGTCTGGTCTTCTCAGTGGGGTGTAGTGGTTACATGTTGTAGAGCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGTCTTCTCAGTGGGGTGTAGTGGTTACATGTTGTAGAGCAGGT  700

seq1  ACAGAGACAGGTAGGG-AATGGCTCCATTCCTGCCACCAAATCTCTGAGA  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAGAGACAGGTAGGGAAATGGCTCCATTCCTGCCACCAAATCTCTGAGA  750

seq1  TTCCTGGTTTGAGCTCATTCAGCCTTAAATTCTTATGCCTGTCTGGTAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTTGAGCTCATTCAGCCTTAAATTCTTATGCCTGTCTGGTAGT  800

seq1  GCATTCCCACATG-TCCTACATTCTAACGTTTTTCCTCCTTTCTTGTGGT  848
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCACATGTTCCTACATTCTAACGTTTTTCCTCCTTTCTTGTGGT  850

seq1  TCTTCTATTTCTCTCCCTACCTGGGACCCCTGGC-TGGGATCAGAAGTCC  897
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTTCTATTTCTCTCCCTACCTGGGACCCCTGGCTTGGGATCAGAAGTCC  900

seq1  AGCC-TTCCTGTC-TCCCCTGCCCAGTCATAGGC-TGATCATCA-TTTTA  943
      |||| |||||||| |||| ||||||||||||||| ||||||||| |||||
seq2  AGCCTTTCCTGTCTTCCCTTGCCCAGTCATAGGCTTGATCATCATTTTTA  950

seq1  TTAACC-TATCAGAG-ATAATTGGA-GGATATTC-TTTACATAACATTGA  989
      |||||| |||||||| ||||||||| |||||||| |||||||||||||||
seq2  TTAACCTTATCAGAGAATAATTGGAGGGATATTCTTTTACATAACATTGA  1000

seq1  CACAGGAG-ATAGTTCAACAA-TCAATACAAA--GCTA-GTGTTCATACT  1034
      |||||||| |||||||||||| |||  |||||  |||| |||||||||||
seq2  CACAGGAGAATAGTTCAACAATTCATAACAAAAGGCTAGGTGTTCATACT  1050

seq1  GT--AACCAGA---TCTCTGGG-CA-CAGAAA-TCAGCCAACACAC-AAT  1075
      ||  |||||||   |  ||||| ||  ||||| ||||||| ||||| | |
seq2  GTTAAACCAGAATTTTCCTGGGTCATAAGAAATTCAGCCATCACACTAGT  1100

seq1  TAGCCCAC--CACCATTT--GTTGGAGATG--TTTTCTTTC----TTTTT  1115
       |||||||  ||||||||  ||||| || |  ||| |||||    |||||
seq2  AAGCCCACCACACCATTTTGGTTGGGGAAGGTTTTCCTTTCATTTTTTTT  1150

seq1  TTTTTTTTTTCAATTGTA--TTTTTCTGGCTTC---TTTATCAAAACCAG  1160
      ||||||||| ||||||||  |||||||||| ||   |||||| || ||||
seq2  TTTTTTTTTCCAATTGTATTTTTTTCTGGCCTCTCTTTTATC-AACCCAG  1199

seq1  G  1161
      |
seq2  G  1200