BAC Information

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BAC

Clone NameB6Ng01-086L08
Chromosome1 (Build37)
Map Location 38,798,551 - 38,996,595
singlet/doubletdoublet
Overlap geneLonrf2, Chst10, EG625775, Nms
Upstream geneTsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
Downstream genePdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086L08.bB6Ng01-086L08.g
ACCDH900035DH900036
length1,1581,134
definitionDH900035|Mus musculus domesticus DNA, BAC clone: B6Ng01-086L08, 5' end.DH900036|Mus musculus domesticus DNA, BAC clone: B6Ng01-086L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,798,551 - 38,799,723)(38,995,451 - 38,996,595)
sequence
gaattctgcccatacaggtagaggagttgaggaacacaaggtgaagttca
ttgattgcgcatggccttggataattacgccctgtactttcccctcagaa
ttgggaccagaattctgttggtttcattgtcctattttgcttcctattgt
tgtgacaaaacaccatgaccaaaggcaacttgggagggaaaggtttacat
atcccaatcccagtccatcctgcggggaagtcaggggaagaacttgaggc
aggaacctggaggtaggaactgaagtagaggccatggaggaatgttgctt
attggcttgttcctcattgtttgccaagcctacttttatatcccaggacc
acttaccaagggatgacatagcccacagtgggcaccagtcaagaaaatgc
cccagagacttgcctcctacagtcagtctgatggaggcattgttttcaat
taaggttccctctttccagatatcctgaacttcttctgttaggctgacaa
accagcatattcaccatccagaaggaccaaataaatccatattcactctc
tattaactacaaattcaatccaagggtgagggagtctccttacagtttcc
actcactatttcagggattgaagtcaacattgagatccaaggaaacctcc
cactcacccattgccctttgcttcccagtttacagggaagttttaaaaag
atacccaatttctttctgcttttgtttgtgcagtcatatgttgaatatga
actgtccccccacaggctcttgttttaaaccttcagcccagccgaggcac
tattttgaaggctgtgaagcttttgggatgtgactacagatgacagaaat
aggtcactagggatggaactctgaaggtagtgccatgcatggtccctgcc
tgatttctatggcttttcgtggttacacgtgagtagcccctcttaccctg
aactccaagagagaaattgatctctcaatcatgccttctaaccacaatga
gtggaaatcttttctgaaaccctggacgaaaataatgtcctcctgtttct
gtcagaaagtcatcaccagggatggaaaactgcgaagtaagcgtggagta
aactgatgtccacaaaccaatggtatatgttcctctcaatggacgttctt
gtatgggc
gaattctttctgtctgcacagttgctctcctctctcttcagctgcccatc
acctttcagtttgggggactttaaacccagtttccctccctgtgttatct
ctgaaacagaccactaagaagggtcttcccccaactcacatagagaccat
accctcttcagtttcagcaaccacaaaatcaggacactcctggggcaaga
attgtttgatctgagtatctctggataaggggctgtggcttctcaccgtg
tccatcactccggttagacacaagtgccgctcctctaaacaggaggacag
atgtgaaggtaggtaaaggaaggaagcttgagaactaccctgacgggtaa
agatctgcgccagtcttccacagaactcagtccccttacctgaggaggga
atctgtagcatacagaagcagtagatgaacaggattggagaatagtgggg
gagcgggtgtttcatcttcaagctctggattctctttgcagaccacagat
acgttctgttcagagaggtgatgagcatttcccgagggtccagaggcaga
gatgaccctctgccctgcatctatccagcccagggcagtaggagccttta
ttggcagaatcctagagcccattggctgagcaccaatcagcgttgcgcag
gaggaccctggctttctcataaatgtcatgctgagcccttatttgtagaa
taatatccgccgagtgtaagcattgtagagtcatctttttcgagccagca
atacaaataagaagtggagagtcataattgttattctataatggtttgag
aaaaacttctgactcaggaaggcctgttctcctttctttctaaaccataa
ggctggacataaatccataaactcttgcatgtgttcctaaaaagctgttt
attttctcatagtgacgaatggcatctgtgtctttggtgcatctaagaag
aatcctggatatacatgacagattataataaagttcataagaatatccca
tgtctaactcactggaagttctttatagaaaaaagtagttcatcgacatg
actgcctagatgagcggaacagggtgatagccacagacatgtctaatggt
ggcgggaagttcagggatccctcaccctgcacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_38798551_38799723
seq2: B6Ng01-086L08.b_49_1206

seq1  GAATTCTGCCCATACAGGTAGAGGAGTTGAGGAACACAAGGTGAAGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCATACAGGTAGAGGAGTTGAGGAACACAAGGTGAAGTTCA  50

seq1  TTGATTGCGCATGGCCTTGGATAATTACGCCCTGTACTTTCCCCTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCGCATGGCCTTGGATAATTACGCCCTGTACTTTCCCCTCAGAA  100

seq1  TTGGGACCAGAATTCTGTTGGTTTCATTGTCCTATTTTGCTTCCTATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACCAGAATTCTGTTGGTTTCATTGTCCTATTTTGCTTCCTATTGT  150

seq1  TGTGACAAAACACCATGACCAAAGGCAACTTGGGAGGGAAAGGTTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAAACACCATGACCAAAGGCAACTTGGGAGGGAAAGGTTTACAT  200

seq1  ATCCCAATCCCAGTCCATCCTGCGGGGAAGTCAGGGGAAGAACTTGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAATCCCAGTCCATCCTGCGGGGAAGTCAGGGGAAGAACTTGAGGC  250

seq1  AGGAACCTGGAGGTAGGAACTGAAGTAGAGGCCATGGAGGAATGTTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTGGAGGTAGGAACTGAAGTAGAGGCCATGGAGGAATGTTGCTT  300

seq1  ATTGGCTTGTTCCTCATTGTTTGCCAAGCCTACTTTTATATCCCAGGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTGTTCCTCATTGTTTGCCAAGCCTACTTTTATATCCCAGGACC  350

seq1  ACTTACCAAGGGATGACATAGCCCACAGTGGGCACCAGTCAAGAAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCAAGGGATGACATAGCCCACAGTGGGCACCAGTCAAGAAAATGC  400

seq1  CCCAGAGACTTGCCTCCTACAGTCAGTCTGATGGAGGCATTGTTTTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGACTTGCCTCCTACAGTCAGTCTGATGGAGGCATTGTTTTCAAT  450

seq1  TAAGGTTCCCTCTTTCCAGATATCCTGAACTTCTTCTGTTAGGCTGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTCCCTCTTTCCAGATATCCTGAACTTCTTCTGTTAGGCTGACAA  500

seq1  ACCAGCATATTCACCATCCAGAAGGACCAAATAAATCCATATTCACTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCATATTCACCATCCAGAAGGACCAAATAAATCCATATTCACTCTC  550

seq1  TATTAACTACAAATTCAATCCAAGGGTGAGGGAGTCTCCTTACAGTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTACAAATTCAATCCAAGGGTGAGGGAGTCTCCTTACAGTTTCC  600

seq1  ACTCACTATTTCAGGGATTGAAGTCAACATTGAGATCCAAGGAAACCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTATTTCAGGGATTGAAGTCAACATTGAGATCCAAGGAAACCTCC  650

seq1  CACTCACCCATTGCCCTTTGCTTCCCAGTTTACAGGGAAGTTTTAAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCCATTGCCCTTTGCTTCCCAGTTTACAGGGAAGTTTTAAAAAG  700

seq1  ATACCCAATTTCTTTCTGCTTTTGTTTGTGCAGTCATATGTTGAATATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAATTTCTTTCTGCTTTTGTTTGTGCAGTCATATGTTGAATATGA  750

seq1  ACTGTCCCCCCACAGGCTCTTGTTTTAAACCTTCAGCCCAGCCGAGGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCCCCACAGGCTCTTGTTTTAAACCTTCAGCCCAGCCGAGGCAC  800

seq1  TATTTTGAAGGCTGTGAAGCTTTTGGGATGTGACTACAGATGACAGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAAGGCTGTGAAGCTTTTGGGATGTGACTACAGATGACAGAAAT  850

seq1  AGGTCACTAGGGATGGAACTCTGAAGGTTAGTGCCATGCATGGTCCCTGC  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGTCACTAGGGATGGAACTCTGAAGG-TAGTGCCATGCATGGTCCCTGC  899

seq1  CTGATTTCTATGGCTTTTCGTGGTTACACGTGAGTAGCCCCCTCTTACCC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGATTTCTATGGCTTTTCGTGGTTACACGTGAGTAG-CCCCTCTTACCC  948

seq1  TGAACTCCAAGAGAGAAATTGATCTCTCAATCATGCCTTCTTAACCACAA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAACTCCAAGAGAGAAATTGATCTCTCAATCATGCCTTC-TAACCACAA  997

seq1  TGAGTGGAAATCTTTTCTGAAACCCTGGACGAAAATAAATGTTCCTCCCT  1050
      |||||||||||||||||||||||||||||||||||| |||| ||||||  
seq2  TGAGTGGAAATCTTTTCTGAAACCCTGGACGAAAAT-AATG-TCCTCC--  1043

seq1  TGTTTCTGTCAGAAAGTTCATCA-CAGGGATGGAAAAACTGCCAGAAGTA  1099
      |||||||||||||||| |||||| ||||||||| ||||||||  ||||||
seq2  TGTTTCTGTCAGAAAG-TCATCACCAGGGATGG-AAAACTGC--GAAGTA  1089

seq1  AGCGTGGAGTAAACTTGATGTCAACCATACCAATGGGTATATGT--CTCT  1147
      |||||||||||||| ||||||| | || |||||| |||||||||  ||||
seq2  AGCGTGGAGTAAAC-TGATGTCCA-CAAACCAAT-GGTATATGTTCCTCT  1136

seq1  CAAATGGACATTTTCTTGTTATGGGC  1173
      | |||||||   |||||| |||||||
seq2  C-AATGGAC--GTTCTTG-TATGGGC  1158

seq1: chr1_38995451_38996595
seq2: B6Ng01-086L08.g_67_1200 (reverse)

seq1  TTGTGCAGGGTTGAGGGCTCCCTGGACTTCCCCGCCCACATTAG-CATGT  49
      |||||||||| |||||| |||||| |||| ||||||  |||||| |||||
seq2  TTGTGCAGGG-TGAGGGATCCCTGAACTT-CCCGCCACCATTAGACATGT  48

seq1  CTGTTGCTATCACCCTTGTTCCGCTCATCCTTAGGCAGTCATGTCGATGA  99
      |||| |||||||||| |||||||||||||  |||||||||||||||||||
seq2  CTGTGGCTATCACCC-TGTTCCGCTCATC--TAGGCAGTCATGTCGATGA  95

seq1  ACTACTTTTTTCTATAAAGGAACTTCCAGTGAGTTAGACATGGGATAATT  149
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  ACTACTTTTTTCTATAAA-GAACTTCCAGTGAGTTAGACATGGGAT-ATT  143

seq1  CTTATTGAACTTTA-TATAATCTGTCATGTTATATCCAGGATTCCTTCTT  198
      |||| ||||||||| |||||||||||||| ||||||||||||| ||||||
seq2  CTTA-TGAACTTTATTATAATCTGTCATG-TATATCCAGGATT-CTTCTT  190

seq1  AGATGCACCAAAGACCACAAGATGCCATTCGTCACTATGAGAAAATAAAC  248
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  AGATGCACCAAAGA-CAC-AGATGCCATTCGTCACTATGAGAAAATAAAC  238

seq1  AGCTTTTTAGGAACACATGCAAGAGTTTATGGATTTATGTCCAGCCTTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTAGGAACACATGCAAGAGTTTATGGATTTATGTCCAGCCTTAT  288

seq1  GGTTTAGAAAGAAAGGAGAACAGGCCTTCCCTGAGTCAGAAGTTTTTCTC  348
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTTTAGAAAGAAAGGAGAACAGGCCTT-CCTGAGTCAGAAGTTTTTCTC  337

seq1  AAACCATTATAGAATAACAATTATGACTCTCCACTTCTTATTTGTATTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTATAGAATAACAATTATGACTCTCCACTTCTTATTTGTATTGC  387

seq1  TGGCTCGAAAAAGATGACTCTACAATGCTTACACTCGGCGGATATTATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCGAAAAAGATGACTCTACAATGCTTACACTCGGCGGATATTATTC  437

seq1  TACAAATAAGGGCTCAGCATGACATTTATGAGAAAGCCAGGGTCCTCCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAAGGGCTCAGCATGACATTTATGAGAAAGCCAGGGTCCTCCTG  487

seq1  CGCAACGCTGATTGGTGCTCAGCCAATGGGCTCTAGGATTCTGCCAATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACGCTGATTGGTGCTCAGCCAATGGGCTCTAGGATTCTGCCAATAA  537

seq1  AGGCTCCTACTGCCCTGGGCTGGATAGATGCAGGGCAGAGGGTCATCTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTACTGCCCTGGGCTGGATAGATGCAGGGCAGAGGGTCATCTCT  587

seq1  GCCTCTGGACCCTCGGGAAATGCTCATCACCTCTCTGAACAGAACGTATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGACCCTCGGGAAATGCTCATCACCTCTCTGAACAGAACGTATC  637

seq1  TGTGGTCTGCAAAGAGAATCCAGAGCTTGAAGATGAAACACCCGCTCCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTGCAAAGAGAATCCAGAGCTTGAAGATGAAACACCCGCTCCCC  687

seq1  CACTATTCTCCAATCCTGTTCATCTACTGCTTCTGTATGCTACAGATTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTCTCCAATCCTGTTCATCTACTGCTTCTGTATGCTACAGATTCC  737

seq1  CTCCTCAGGTAAGGGGACTGAGTTCTGTGGAAGACTGGCGCAGATCTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGTAAGGGGACTGAGTTCTGTGGAAGACTGGCGCAGATCTTTA  787

seq1  CCCGTCAGGGTAGTTCTCAAGCTTCCTTCCTTTACCTACCTTCACATCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCAGGGTAGTTCTCAAGCTTCCTTCCTTTACCTACCTTCACATCTG  837

seq1  TCCTCCTGTTTAGAGGAGCGGCACTTGTGTCTAACCGGAGTGATGGACAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGTTTAGAGGAGCGGCACTTGTGTCTAACCGGAGTGATGGACAC  887

seq1  GGTGAGAAGCCACAGCCCCTTATCCAGAGATACTCAGATCAAACAATTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAAGCCACAGCCCCTTATCCAGAGATACTCAGATCAAACAATTCT  937

seq1  TGCCCCAGGAGTGTCCTGATTTTGTGGTTGCTGAAACTGAAGAGGGTATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGGAGTGTCCTGATTTTGTGGTTGCTGAAACTGAAGAGGGTATG  987

seq1  GTCTCTATGTGAGTTGGGGGAAGACCCTTCTTAGTGGTCTGTTTCAGAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTATGTGAGTTGGGGGAAGACCCTTCTTAGTGGTCTGTTTCAGAGA  1037

seq1  TAACACAGGGAGGGAAACTGGGTTTAAAGTCCCCCAAACTGAAAGGTGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAGGGAGGGAAACTGGGTTTAAAGTCCCCCAAACTGAAAGGTGAT  1087

seq1  GGGCAGCTGAAGAGAGAGGAGAGCAACTGTGCAGACAGAAAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTGAAGAGAGAGGAGAGCAACTGTGCAGACAGAAAGAATTC  1134