BAC Information

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BAC

Clone NameB6Ng01-086L19
Chromosome1 (Build37)
Map Location 143,319,365 - 143,523,346
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnt2, EG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086L19.bB6Ng01-086L19.g
ACCDH900055DH900056
length1,165958
definitionDH900055|Mus musculus domesticus DNA, BAC clone: B6Ng01-086L19, 5' end.DH900056|Mus musculus domesticus DNA, BAC clone: B6Ng01-086L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,319,365 - 143,320,546)(143,522,368 - 143,523,346)
sequence
gaattccataagagcaaggtacctcaatgtttctagcataaatggatgag
ctataaatgaaaatttagatgttcagaaaaagaattaggcagagccaatg
actcaaatagtaaaatgttctcagagtaagttagaatattctacgacata
actttaaactctttccataaattcaagcagtaagttgaaacaaaccataa
ttattttagaaataatcagtgattaacttgatcactgattaaacttgatg
actagattcattctcaaagcaatatttataccagaaaatatttatatttt
tcttttagcacttaccatgttaaataattttctgatctattttaatatca
aaatttaacattatgaaattttgttacaataaccttttaatttaatttcc
aatttcatttttgaggatataatattactacagcatttctctcattcatt
tcatccctctaaatcatcccatttatcagtctaattctccttcaaattca
tggactctttttgtttcaactaatttttattgcacaaatatatgtatatt
agtaaacataacctgtttagtttgcatactgttacttgtatatacgtttt
catggatgaatgaaactgaaaaagaaattgttgtgtgattttttttttta
atcattgtccaggagaggtttaactaaatggaaaatggagctcacagata
tttctatatgttattcagggtgtggtacagaattaagaaactatagaagc
tgggcagtggtggtgaacacctttaatcccagcacttgggagccagagac
aggcagatttctgagttcgaggccagcctggtctacaaaatgagttccag
gacagccaggtacaggctatacagagaaaccctgacttgaaaaaaattat
agaaatattaatgcagaaatttgaaagaaaagtaaaagaagtaagctatt
tttatttactaatttatttttcattggttatttaatttatttacattcaa
ttatcctcattcccagttctcctctgcaagtccttaccttacctcttcac
tgcttctctggagggtgctctcaccaacctctccaaccactcccacctca
ctgccctagattcccatgctgaggcatgagccttccccaagagccagcat
cttcttgcctgatgc
gaattctttatctcagcaggaagtacaaactcatttccaaagaatatgtc
agtagaacatgggttttcgtttatacattaaatgccatgtcctgtcttta
gcaggcattgattttctgagtatccataagtaacttttcattatgttttg
aagctctatctgtgatgtgatcagaaaaatagtctttataatttattttg
accattttccctgttaaaacaatcttactctatatatttcaggccttttt
tttttttttttttttttttttttttgtaaatccatgtataaacatagtac
atttccagaagcatatagattttaatatgggagtgaatacatatctctca
aagcatcagaacaaaagaagtgataaatgcaattttatctttcaaataag
tagtaagggggtgtttgggaagtattaaggcattttgccactatgtggac
tggacatgtgtattcagtttcttagtgaaatgccttcccattattcccat
taaaaattaatacttatgtggtatattgcattgaagaaaacaaatactta
gaattgtatataattggcaaatagggacttatgtttattaaaaggaaaaa
ttttatataaagttcagtaaagaattaattgccttaacatttgcacatta
agtaatttgtttagcctggaggtggtggcacatgcctttaatcccagcac
ttgggaggcagaggcaggcagatttctgaggccagcctggtctacaaagt
gagttccaggacagccagggctacacagagaaaccctatctcgaaaacca
cataaataaataaataataaataataaatagtgtaaagtcaaattttgtc
atattcactcactttcatttgagaaatcctgccttattctaataaactat
acgtttcattatatgcatgcattcatagtgtcatcgtaaatgtatctgaa
agtctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143319365_143320546
seq2: B6Ng01-086L19.b_44_1208

seq1  GAATTCCATAAGAGCAAGGTACCTCAATGTTTCTAGCATAAATGGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGAGCAAGGTACCTCAATGTTTCTAGCATAAATGGATGAG  50

seq1  CTATAAATGAAAATTTAGATGTTCAGAAAAAGAATTAGGCAGAGCCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATGAAAATTTAGATGTTCAGAAAAAGAATTAGGCAGAGCCAATG  100

seq1  ACTCAAATAGTAAAATGTTCTCAGAGTAAGTTAGAATATTCTACGACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATAGTAAAATGTTCTCAGAGTAAGTTAGAATATTCTACGACATA  150

seq1  ACTTTAAACTCTTTCCATAAATTCAAGCAGTAAGTTGAAACAAACCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAACTCTTTCCATAAATTCAAGCAGTAAGTTGAAACAAACCATAA  200

seq1  TTATTTTAGAAATAATCAGTGATTAACTTGATCACTGATTAAACTTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGAAATAATCAGTGATTAACTTGATCACTGATTAAACTTGATG  250

seq1  ACTAGATTCATTCTCAAAGCAATATTTATACCAGAAAATATTTATATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTCATTCTCAAAGCAATATTTATACCAGAAAATATTTATATTTT  300

seq1  TCTTTTAGCACTTACCATGTTAAATAATTTTCTGATCTATTTTAATATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGCACTTACCATGTTAAATAATTTTCTGATCTATTTTAATATCA  350

seq1  AAATTTAACATTATGAAATTTTGTTACAATAACCTTTTAATTTAATTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAACATTATGAAATTTTGTTACAATAACCTTTTAATTTAATTTCC  400

seq1  AATTTCATTTTTGAGGATATAATATTACTACAGCATTTCTCTCATTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTTTTGAGGATATAATATTACTACAGCATTTCTCTCATTCATT  450

seq1  TCATCCCTCTAAATCATCCCATTTATCAGTCTAATTCTCCTTCAAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTCTAAATCATCCCATTTATCAGTCTAATTCTCCTTCAAATTCA  500

seq1  TGGACTCTTTTTGTTTCAACTAATTTTTATTGCACAAATATATGTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTTTTTGTTTCAACTAATTTTTATTGCACAAATATATGTATATT  550

seq1  AGTAAACATAACCTGTTTAGTTTGCATACTGTTACTTGTATATACGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACATAACCTGTTTAGTTTGCATACTGTTACTTGTATATACGTTTT  600

seq1  CATGGATGAATGAAACTGAAAAAGAAATTGTTGTGTGATTTTTTTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATGAATGAAACTGAAAAAGAAATTGTTGTGTGATTTTTTTTTTTA  650

seq1  ATCATTGTCCAGGAGAGGTTTAACTAAATGGAAAATGGAGCTCACAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTCCAGGAGAGGTTTAACTAAATGGAAAATGGAGCTCACAGATA  700

seq1  TTTCTATATGTTATTCAGGGTGTGGTACAGAATTAAGAAACTATAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATGTTATTCAGGGTGTGGTACAGAATTAAGAAACTATAGAAGC  750

seq1  TGGGCAGTGGTGGTGAACACCTTTAATCCCAGCACTTGGGAGCCAGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTGGTGGTGAACACCTTTAATCCCAGCACTTGGGAGCCAGAGAC  800

seq1  AGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAATGAGTTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAATGAGTTCCAG  850

seq1  GACAGCCAGGTACAGGCTATACAGAGAAACCCTGACTTGAAAAAAAATTA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GACAGCCAGGTACAGGCTATACAGAGAAACCCTGACTTG-AAAAAAATTA  899

seq1  TAGAAATATTAATGCAGAAATTTGAAAGAAAAGTAAAAGAAGTAAGCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATATTAATGCAGAAATTTGAAAGAAAAGTAAAAGAAGTAAGCTAT  949

seq1  TTTTTATTTTACTAATTTATTTTTTCATTGGTTATTTTATTTATTTACAT  1000
      ||||   |||||||||||| ||||||||||||||||| ||||||||||| 
seq2  TTTT--ATTTACTAATTTA-TTTTTCATTGGTTATTTAATTTATTTACA-  995

seq1  TTCAAATTTATCCTCATTCCCAGTTTCTCCTCTGCAAAGTCCTTACCCTT  1050
      |||||  |||||||||||||||| ||||||||||| ||||||||| ||||
seq2  TTCAA--TTATCCTCATTCCCAG-TTCTCCTCTGC-AAGTCCTTA-CCTT  1040

seq1  ACCTCTTCACCTGCTTCTCT-GAGGGTGCTCTCCACCCACCTCTCCAACC  1099
      ||||||||| |||||||||| ||||||||||| |||| ||||||||||||
seq2  ACCTCTTCA-CTGCTTCTCTGGAGGGTGCTCT-CACCAACCTCTCCAACC  1088

seq1  ACTCCCACCTCACTGCCCTAGGATTCCCCCATGCTGAGGCATTGAGCC-T  1148
      |||||||||||||||||||| ||||  |||||||||||||| |||||| |
seq2  ACTCCCACCTCACTGCCCTA-GATT--CCCATGCTGAGGCA-TGAGCCTT  1134

seq1  CCACAAGAGCAAAGGCATCTTCTTGCTTTGATGC  1182
      || ||||||| |  ||||||||||||  ||||||
seq2  CCCCAAGAGCCA--GCATCTTCTTGC-CTGATGC  1165

seq1: chr1_143522368_143523346
seq2: B6Ng01-086L19.g_66_1023 (reverse)

seq1  AAGAGACTTTTCAAGATAACATATTACGGATGACACTTAATGAAATGCAT  50
      ||||||||||   |||| |||| |||| |||||||||  ||| |||||||
seq2  AAGAGACTTT--CAGAT-ACAT-TTAC-GATGACACT--ATG-AATGCAT  42

seq1  GCATATAATGAAACGTAATAGTTTATTTAGAAATAAAGGCAAGGATTTCT  100
      |||||||||||||||| |||||||| ||||||   ||||| |||||||||
seq2  GCATATAATGAAACGT-ATAGTTTA-TTAGAA--TAAGGC-AGGATTTCT  87

seq1  CAAATTGAAAGTGAGTGAAATAATGAACAAAATTTGACTTTTACACTATT  150
      |||| ||||||||||||||   ||| |||||||||||| |||||||||||
seq2  CAAA-TGAAAGTGAGTGAA--TATG-ACAAAATTTGAC-TTTACACTATT  132

seq1  TATTTATTTATTTATTTATTTATTTATGTGGTTTTTCGAGATAGGGTTTC  200
      || ||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  TA-TTATTTA-TTATTTATTTATTTATGTGG-TTTTCGAGATAGGGTTTC  179

seq1  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC  229

seq1  TCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGT  279

seq1  GCCACCACCTCCAGGCTAAACAAATTACTTAATGTGCAAATGTTAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACCTCCAGGCTAAACAAATTACTTAATGTGCAAATGTTAAGGCA  329

seq1  ATTAATTCTTTACTGAACTTTATATAAAATTTTTCCTTTTAATAAACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCTTTACTGAACTTTATATAAAATTTTTCCTTTTAATAAACATA  379

seq1  AGTCCCTATTTGCCAATTATATACAATTCTAAGTATTTGTTTTCTTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTATTTGCCAATTATATACAATTCTAAGTATTTGTTTTCTTCAAT  429

seq1  GCAATATACCACATAAGTATTAATTTTTAATGGGAATAATGGGAAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATACCACATAAGTATTAATTTTTAATGGGAATAATGGGAAGGCAT  479

seq1  TTCACTAAGAAACTGAATACACATGTCCAGTCCACATAGTGGCAAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAAGAAACTGAATACACATGTCCAGTCCACATAGTGGCAAAATGC  529

seq1  CTTAATACTTCCCAAACACCACCTTACTACTTATTTGAAAGATAAAATTG  600
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTAATACTTCCCAAACACCCCCTTACTACTTATTTGAAAGATAAAATTG  579

seq1  CATTTATCACTTCTTTTGTTCTGATGCTTTGAGAGATATGTATTCACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCACTTCTTTTGTTCTGATGCTTTGAGAGATATGTATTCACTCC  629

seq1  CATATTAAAATCTATATGCTTCTGGAAATGTACTATGTTTATACATGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAAAATCTATATGCTTCTGGAAATGTACTATGTTTATACATGGAT  679

seq1  TTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCTGAAATATATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCTGAAATATATAG  729

seq1  AGTAAGATTGTTTTAACAGGGAAAATGGTCAAAATAAATTATAAAGACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATTGTTTTAACAGGGAAAATGGTCAAAATAAATTATAAAGACTA  779

seq1  TTTTTCTGATCACATCACAGATAGAGCTTCAAAACATAATGAAAAGTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGATCACATCACAGATAGAGCTTCAAAACATAATGAAAAGTTAC  829

seq1  TTATGGATACTCAGAAAATCAATGCCTGCTAAAGACAGGACATGGCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATACTCAGAAAATCAATGCCTGCTAAAGACAGGACATGGCATTT  879

seq1  AATGTATAAACGAAAACCCATGTTCTACTGACATATTCTTTGGAAATGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATAAACGAAAACCCATGTTCTACTGACATATTCTTTGGAAATGAG  929

seq1  TTTGTACTTCCTGCTGAGATAAAGAATTC  979
      |||||||||||||||||||||||||||||
seq2  TTTGTACTTCCTGCTGAGATAAAGAATTC  958