BAC Information

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BAC

Clone NameB6Ng01-086L21
Chromosome1 (Build37)
Map Location 17,136,066 - 17,137,191
singlet/doubletsinglet
Overlap geneGdap1
Upstream geneEG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1
Downstream geneLOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086L21.bB6Ng01-086L21.g
ACCDH900059DH900060
length1,1751,104
definitionDH900059|Mus musculus domesticus DNA, BAC clone: B6Ng01-086L21, 5' end.DH900060|Mus musculus domesticus DNA, BAC clone: B6Ng01-086L21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctaggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaagtcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtggtaaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaaagaaagacagcattttcaacaaatggtgctg
gcacaactggtgtatcatgtagaagaatgtgatcgatccatactatctct
gtactaaggtcaatctaaatggatcaagaacttcacataaacagagacac
tgaaactataagagaagtggggaaagctgagattggcacaggtaaaatcc
tgaacgaacagcatgcctttcttagatcggaattgcaatgtactatggat
ctcaagttctgcaaggcaaagaaat
gaattcatgggaacctttttatctccactcctctacttttgggattgcag
tcttggttcaccatgacaggctcttccttaaaaatagatagatagataga
tagatagatagatagatagatagataaggaaagaaagaagttaggtgttt
aaactcagagacagagtccttgtctagcaggcccaaggtttggtaatgcc
tagcatttaaggggtatgcggtgtgggggcaagacaaattcatataaagg
caccacctctcaccaagggaatgaaaatgcttttatattcccaaatttgc
attctttatcaaaggtgcaaacatatatttgtacttaaggtggttctctt
ttggattccctagagctggagttacacgccctgtgaatcacccagggtgg
atgcagggggtcaagagcagtacattttttcaaaccagtggttcccagtc
ttcctagtgcttcaaccctttaatatacttcctcatgttgtgggggaaca
caaccataaaattattttcattgctatgcataactgtaaatttgctgctg
ttatgaattgtaatgtaaatatctaatatgtaggacatttgatatgtgct
tcctgtgaaaggttcgattgaccctcaggttgagaaccactgccttaact
gctatgccagctcttcagtcctgtacatccggggagaacacatagtttgg
tttaaggcacaaagatcacagtggtgatgaggaaagaacaactgtaatga
agacaaaataattttcatccctgttattttcttctgtaatgctgtcagta
agctgccagaatacttatttattccttctaggaacagacttcgtgcagtg
aacttgtaaagtacttctggctcagaaggcagctagggttgtttagctgt
atccagggaagtgagaacagcagtaacccctgtgcactcttgcaggtgcg
cttggtattgctgaaagcactgagtgcgagaacacgatgtaagtctgccc
ttgagtgagcacatgagccttggatatgcgctgactcagctgagaagtac
cggtctgtccacgggagaacattatctgggaggcactcgatcatgaatat
cttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_17136066_17137191
seq2: B6Ng01-086L21.g_69_1172

seq1  GAATTCATGGGAACCTTTTTATCTCCACTCCTCTACTTTTGGGATTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGAACCTTTTTATCTCCACTCCTCTACTTTTGGGATTGCAG  50

seq1  TCTTGGTTCACCATGACAGGCTCTTCCTTAAAAATAGATAGATAGATAGA  100
      |||||||||||||||||||||||||||||||||    |||||||||||||
seq2  TCTTGGTTCACCATGACAGGCTCTTCCTTAAAA----ATAGATAGATAGA  96

seq1  TAGATAGATAGATAGATAGATAGATAGATAAGGAAAGAAAGAAGTTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATAGATAGATAAGGAAAGAAAGAAGTTAGGT  146

seq1  GTTTAAACTCAGAGACAGAGTCCTTGTCTAGCAGGCCCAAGGTTTGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAACTCAGAGACAGAGTCCTTGTCTAGCAGGCCCAAGGTTTGGTAA  196

seq1  TGCCTAGCATTTAAGGGGTATGCGGTGTGGGGGCAAGACAAATTCATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGCATTTAAGGGGTATGCGGTGTGGGGGCAAGACAAATTCATATA  246

seq1  AAGGCACCACCTCTCACCAAGGGAATGAAAATGCTTTTATATTCCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACCACCTCTCACCAAGGGAATGAAAATGCTTTTATATTCCCAAAT  296

seq1  TTGCATTCTTTATCAAAGGTGCAAACATATATTTGTACTTAAGGTGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCTTTATCAAAGGTGCAAACATATATTTGTACTTAAGGTGGTTC  346

seq1  TCTTTTGGATTCCCTAGAGCTGGAGTTACACGCCCTGTGAATCACCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGATTCCCTAGAGCTGGAGTTACACGCCCTGTGAATCACCCAGG  396

seq1  GTGGATGCAGGGGGTCAAGAGCAGTACATTTTTTCAAACCAGTGGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCAGGGGGTCAAGAGCAGTACATTTTTTCAAACCAGTGGTTCCC  446

seq1  AGTCTTCCTAGTGCTTCAACCCTTTAATATACTTCCTCATGTTGTGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCTAGTGCTTCAACCCTTTAATATACTTCCTCATGTTGTGGGGG  496

seq1  AACACAACCATAAAATTATTTTCATTGCTATGCATAACTGTAAATTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAACCATAAAATTATTTTCATTGCTATGCATAACTGTAAATTTGCT  546

seq1  GCTGTTATGAATTGTAATGTAAATATCTAATATGTAGGACATTTGATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTATGAATTGTAATGTAAATATCTAATATGTAGGACATTTGATATG  596

seq1  TGCTTCCTGTGAAAGGTTCGATTGACCCTCAGGTTGAGAACCACTGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGTGAAAGGTTCGATTGACCCTCAGGTTGAGAACCACTGCCTT  646

seq1  AACTGCTATGCCAGCTCTTCAGTCCTGTACATCCGGGGAGAACACATAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTATGCCAGCTCTTCAGTCCTGTACATCCGGGGAGAACACATAGT  696

seq1  TTGGTTTAAGGCACAAAGATCACAGTGGTGATGAGGAAAGAACAACTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTAAGGCACAAAGATCACAGTGGTGATGAGGAAAGAACAACTGTA  746

seq1  ATGAAGACAAAATAATTTTCATCCCTGTTATTTTCTTCTGTAATGCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACAAAATAATTTTCATCCCTGTTATTTTCTTCTGTAATGCTGTC  796

seq1  AGTAAGCTGCCAGAATACTTATTTATTCCTTCTAGGAACAGACTTCGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCTGCCAGAATACTTATTTATTCCTTCTAGGAACAGACTTCGTGC  846

seq1  AGTGAACTTGTAAAGTACTTCTGGCTCAGGAAGGCAGCTAGGGTTGTTTA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTGAACTTGTAAAGTACTTCTGGCTCA-GAAGGCAGCTAGGGTTGTTTA  895

seq1  GCTGTATCCAGGGAAGGTGAGAACAGCAGTAACCCCTGTGCACTCTTGCA  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTGTATCCAGGGAA-GTGAGAACAGCAGTAACCCCTGTGCACTCTTGCA  944

seq1  GGTGCGCTTGGTAATTGCTGAAAAGGCACTGAAGTGCGAGGAACACGATG  1000
      |||||||||||| ||||||||||  |||||| ||||||| ||||||||||
seq2  GGTGCGCTTGGT-ATTGCTGAAA--GCACTG-AGTGCGA-GAACACGATG  989

seq1  TAAGTCTGCCCCTGAGTGAGCACAATGAGCCTTGGTTTATGCGCTTGAAC  1050
      ||||||||||| ||||||||||| |||||||||||  ||||||||   ||
seq2  TAAGTCTGCCCTTGAGTGAGCAC-ATGAGCCTTGG-ATATGCGCT--GAC  1035

seq1  TCAGCTGGAGAAGTACCGGTCCTTGTCCACGGGGAGAACATAATCTGTGA  1100
      |||||| ||||||||||||||  ||||||| |||||||||| ||||| ||
seq2  TCAGCT-GAGAAGTACCGGTC--TGTCCAC-GGGAGAACATTATCTGGGA  1081

seq1  GGCCACTCAGATCATTGATTATCTTG  1126
      || ||||| ||||| ||| |||||||
seq2  GG-CACTC-GATCA-TGAATATCTTG  1104