BAC Information

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BAC

Clone NameB6Ng01-086O10
Chromosome1 (Build37)
Map Location 171,945,146 - 172,092,653
singlet/doubletdoublet
Overlap geneDdr2, LOC100040571, Uap1
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7
Downstream geneUhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086O10.bB6Ng01-086O10.g
ACCDH900176DH900177
length1,1671,218
definitionDH900176|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O10, 5' end.DH900177|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,091,483 - 172,092,653)(171,945,146 - 171,946,367)
sequence
gaattcacagtaagtagtgcactagtttataaagtgagttcagacagagc
agcccttgagtagtctgctctttgtgtttaacattttgggaagcagtttc
agttgtaacatgtgattgcaacgtcaagacttaggatgggcatggcagta
cctgctgtagtcagaacgcacgggtgtggaagcagggggtcactagttca
agtccatgtttggctgcatggaaagtttgaggctagaagtatgtgagact
ttatctaaaacacaaaacaaaacgacaacaaaaggccagacaaagctttt
gtgcttcagtatttgttctgactggctttcttggatagctttcattcttg
tgtcctagctgaagcgcctgctgatgccccttgacttgtcctgaggtgtc
tacagtttacatggaagttcttgtgctctgctttagcagcgcccatgaaa
ccgcccgtgtttcaggcacccgtccaagttaaagctcagggaggaagcag
tccaaccaggaagttacccaggaagggtttgacctttcacaggccactgg
aaactaacagccttgtttcttgtaatgttatcaaggaagagtgctcagaa
ccttctgggctcacagtgcctgggtctccaaagagagaagttctctagag
ctacaattctctctctctggcttaatttttgttgttgttttattttattt
ttttctttgtgtcttaaaatccatcctgtaagaaagtcttaactcagttg
gagttggtgctacagggcagttgtgaaccagctggtaactgaacttggtc
cctcttgaagagcagctcttaacagctgaggcctagaaagatattttaat
gtgttcattgaagtctctcactggtttttggtgggttgcctaaacttaag
tttgtatgttgaattttggaggttttgtgatacaagtgtttttcttttct
aggacttctcagatttctcagaacaaagtagcagttcttcttctagctgg
tgggcagggacaaggacttggagtctcatatcccaagggcatgtatgatg
ttggcttgcaatcccacaagacgctttttcagaattcagcagacgtattc
tgaaacctcagcagtagctgaaaacaccatggccacaagtgcccattcca
atgttagctgcggctcg
tataccctaccaactgtgcagacagaatatgtgtcgctctgccaaatacc
agaagatccaactgctccgccaatagccaatctggatttgagttcacagc
ctcttacagaagccaaagatacaagagcatgcttcaagagctagccagcc
cagctctacaaggaagcaggccataccagttctactactactacaccaca
ggtttctcaataactagtcataatgaataaggggcagaaatgtacccaaa
tcctttactcttgtgtttaaatccttactcttggcttgccaagggaaagg
ttccagtccactcttttgggtactgtaacctgttaagatgtaaagtctaa
ggaactgtgttttctgtgttcaagcattactaactaccaaaaagctactg
tcttgcagaagttaagcatttcttttatttaatcaagaaacaaaacagag
gcaggcacctcggtatacatccataaccccaggggagggtgaagataggg
gaaggaagagccggagctcaagggcagccatagctccagggaaagttcaa
tcccagtccaggcaataggagagcctgtagcaaaacagtcaaaaagaaag
aaatgcagggaggagagagtcaaaagaggtgggggagtggcatacatata
tacagacagacagacttatttggtggcatatacctacactctaagcactt
tggaggccaagacatgatgatgattcataatatgaggccagcctgagtta
cacagcaaattccaagatagtcttagctatatagtttgatcttgagtctg
aaaggaaattaaacaaaataaaaggtttaaactaaaaatgcctgggactg
agactgcaaagaaaaaaagcccgggcatgcccgagtccgtcttgaagcta
ggtcacctggtcgtaagataagggaaggaatgcagaactggttctgacta
tcttggctgactcattgaccatctggtagcccagcgcctcctgctcaccc
ccctttttatagagagcatagttaaaagctgaaacattaaccagaataca
atgtcgactcagatagcctccagcttcagattcctttatacgccccggcc
tgcacgtactactctgctgacctcataatcatggttgctgatgttgaatg
ggccaatcgaatgtaccgcgacgaatcttcctagccctatcctatcccta
taaactctcgagattttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172091483_172092653
seq2: B6Ng01-086O10.b_49_1215 (reverse)

seq1  CGAGCCGCAGCTTACCATGGGATGGTGCACTTGTTGCCATGGTGTTTTTC  50
      |||||||||||| ||  ||| |||| |||||||| ||||||||| |||||
seq2  CGAGCCGCAGCTAACATTGGAATGG-GCACTTGTGGCCATGGTG-TTTTC  48

seq1  AGCTAACTGCTGGAGTTTCAGAATACGTTCTGCTTGAATCTGAAAAAGCG  100
      |||| |||||||  ||||||||||||| ||||||  | ||||||||||||
seq2  AGCT-ACTGCTGAGGTTTCAGAATACG-TCTGCTGAATTCTGAAAAAGCG  96

seq1  TCTTGTGGGATGGCAAGCCAACATCATACATGCCCTTGGGATATGAGACT  150
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGGGATTGCAAGCCAACATCATACATGCCCTTGGGATATGAGACT  146

seq1  CCAAGT-CTTGTCCCCTGCCCACCAGCTAGAAGAAGAACTGCTACTTTGT  199
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCTTGT-CCCTGCCCACCAGCTAGAAGAAGAACTGCTACTTTGT  195

seq1  TCTGAGAAATCTGAGAAAGTCCTAGAAAAG-AAAACACTTGTATCACAAA  248
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TCTGAGAAATCTGAG-AAGTCCTAGAAAAGAAAAACACTTGTATCACAAA  244

seq1  ACCTCCAAAATTCAACATACAAACTTAAGTTTAGGCAACCCACCAAAAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAAAATTCAACATACAAACTTAAGTTTAGGCAACCCACCAAAAAC  294

seq1  CAGTGAGAGACTTCAATGAACACATTAAAATATCTTTCTAGGCCTCAGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGACTTCAATGAACACATTAAAATATCTTTCTAGGCCTCAGCT  344

seq1  GTTAAGAGCTGCTCTTCAAGAGGGACCAAGTTCAGTTACCAGCTGGTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGCTGCTCTTCAAGAGGGACCAAGTTCAGTTACCAGCTGGTTCA  394

seq1  CAACTGCCCTGTAGCACCAACTCCAACTGAGTTAAGACTTTCTTACAGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCCTGTAGCACCAACTCCAACTGAGTTAAGACTTTCTTACAGGA  444

seq1  TGGATTTTAAGACACAAAGAAAAAAATAAAATAAAACAACAACAAAAATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTAAGACACAAAGAAAAAAATAAAATAAAACAACAACAAAAATT  494

seq1  AAGCCAGAGAGAGAGAATTGTAGCTCTAGAGAACTTCTCTCTTTGGAGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGAGAGAGAATTGTAGCTCTAGAGAACTTCTCTCTTTGGAGAC  544

seq1  CCAGGCACTGTGAGCCCAGAAGGTTCTGAGCACTCTTCCTTGATAACATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACTGTGAGCCCAGAAGGTTCTGAGCACTCTTCCTTGATAACATT  594

seq1  ACAAGAAACAAGGCTGTTAGTTTCCAGTGGCCTGTGAAAGGTCAAACCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAACAAGGCTGTTAGTTTCCAGTGGCCTGTGAAAGGTCAAACCCT  644

seq1  TCCTGGGTAACTTCCTGGTTGGACTGCTTCCTCCCTGAGCTTTAACTTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTAACTTCCTGGTTGGACTGCTTCCTCCCTGAGCTTTAACTTGG  694

seq1  ACGGGTGCCTGAAACACGGGCGGTTTCATGGGCGCTGCTAAAGCAGAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTGCCTGAAACACGGGCGGTTTCATGGGCGCTGCTAAAGCAGAGCA  744

seq1  CAAGAACTTCCATGTAAACTGTAGACACCTCAGGACAAGTCAAGGGGCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTTCCATGTAAACTGTAGACACCTCAGGACAAGTCAAGGGGCAT  794

seq1  CAGCAGGCGCTTCAGCTAGGACACAAGAATGAAAGCTATCCAAGAAAGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCGCTTCAGCTAGGACACAAGAATGAAAGCTATCCAAGAAAGCC  844

seq1  AGTCAGAACAAATACTGAAGCACAAAAGCTTTGTCTGGCCTTTTGTTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAACAAATACTGAAGCACAAAAGCTTTGTCTGGCCTTTTGTTGTC  894

seq1  GTTTTGTTTTGTGTTTTAGATAAAGTCTCACATACTTCTAGCCTCAAACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTGTTTTAGATAAAGTCTCACATACTTCTAGCCTCAAACT  944

seq1  TTCCATGCAGCCAAACATGGACTTGAACTAGTGACCCCCTGCTTCCACAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGCAGCCAAACATGGACTTGAACTAGTGACCCCCTGCTTCCACAC  994

seq1  CCGTGCGTTCTGACTACAGCAGGTACTGCCATGCCCATCCTAAGTCTTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCGTTCTGACTACAGCAGGTACTGCCATGCCCATCCTAAGTCTTGA  1044

seq1  CGTTGCAATCACATGTTACAACTGAAACTGCTTCCCAAAATGTTAAACAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCAATCACATGTTACAACTGAAACTGCTTCCCAAAATGTTAAACAC  1094

seq1  AAAGAGCAGACTACTCAAGGGCTGCTCTGTCTGAACTCACTTTATAAACT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAGACTACTCAAGGGCTGCTCTGTCTGAACTCACTTTATAAACT  1144

seq1  AGTGCACTACTTACTGTGAATTC  1171
      |||||||||||||||||||||||
seq2  AGTGCACTACTTACTGTGAATTC  1167

seq1: chr1_171945146_171946367
seq2: B6Ng01-086O10.g_79_1296

seq1  TATACCCTACCAACTGTGCAGACAGAATATGTGTCGCTCTGCCAAATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCTACCAACTGTGCAGACAGAATATGTGTCGCTCTGCCAAATACC  50

seq1  AGAAGATCCAACTGCTCCGCCAATAGCCAATCTGGATTTGAGTTCACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCCAACTGCTCCGCCAATAGCCAATCTGGATTTGAGTTCACAGC  100

seq1  CTCTTACAGAAGCCAAAGATACAAGAGCATGCTTCAAGAGCTAGCCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACAGAAGCCAAAGATACAAGAGCATGCTTCAAGAGCTAGCCAGCC  150

seq1  CAGCTCTACAAGGAAGCAGGCCATACCAGTTCTACTACTACTACACCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTACAAGGAAGCAGGCCATACCAGTTCTACTACTACTACACCACA  200

seq1  GGTTTCTCAATAACTAGTCATAATGAATAAGGGGCAGAAATGTACCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCAATAACTAGTCATAATGAATAAGGGGCAGAAATGTACCCAAA  250

seq1  TCCTTTACTCTTGTGTTTAAATCCTTACTCTTGGCTTGCCAAGGGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACTCTTGTGTTTAAATCCTTACTCTTGGCTTGCCAAGGGAAAGG  300

seq1  TTCCAGTCCACTCTTTTGGGTACTGTAACCTGTTAAGATGTAAAGTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCCACTCTTTTGGGTACTGTAACCTGTTAAGATGTAAAGTCTAA  350

seq1  GGAACTGTGTTTTCTGTGTTCAAGCATTACTAACTACCAAAAAGCTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGTGTTTTCTGTGTTCAAGCATTACTAACTACCAAAAAGCTACTG  400

seq1  TCTTGCAGAAGTTAAGCATTTCTTTTATTTAATCAAGAAACAAAACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGAAGTTAAGCATTTCTTTTATTTAATCAAGAAACAAAACAGAG  450

seq1  GCAGGCACCTCGGTATACATCCATAACCCCAGGGGAGGGTGAAGATAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCACCTCGGTATACATCCATAACCCCAGGGGAGGGTGAAGATAGGG  500

seq1  GAAGGAAGAGCCGGAGCTCAAGGGCAGCCATAGCTCCAGGGAAAGTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAGCCGGAGCTCAAGGGCAGCCATAGCTCCAGGGAAAGTTCAA  550

seq1  TCCCAGTCCAGGCAATAGGAGAGCCTGTAGCAAAACAGTCAAAAAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCCAGGCAATAGGAGAGCCTGTAGCAAAACAGTCAAAAAGAAAG  600

seq1  AAATGCAGGGAGGAGAGAGTCAAAAGAGGTGGGGGAGTGGCATACATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGGGAGGAGAGAGTCAAAAGAGGTGGGGGAGTGGCATACATATA  650

seq1  TACAGACAGACAGACTTATTTGGTGGCATATACCTACACTCTAAGCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACAGACAGACTTATTTGGTGGCATATACCTACACTCTAAGCACTT  700

seq1  TGGAGGCCAAGACATGATGATGATTCATAATATGAGGCCAGCCTGAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCAAGACATGATGATGATTCATAATATGAGGCCAGCCTGAGTTA  750

seq1  CACAGCAAATTCCAAGATAGTCTTAGCTATATAGTTTGATCTTGAGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAAATTCCAAGATAGTCTTAGCTATATAGTTTGATCTTGAGTCTG  800

seq1  AAAGGAAATTAAACAAAATAAAAGGTTTAAACTAAAAATGCCTGGGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATTAAACAAAATAAAAGGTTTAAACTAAAAATGCCTGGGACTG  850

seq1  AGACTGCAAAGAAAAAAAGCCCGGGCATGCCCGAGTCCGTCTTGAAGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCAAAGAAAAAAAGCCCGGGCATGCCCGAGTCCGTCTTGAAGCTA  900

seq1  GGTCACCTGGTCGTAAGGATAAGGGAAGGAATGCAGGAACTGGTTCTGAC  950
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  GGTCACCTGGTCGTAA-GATAAGGGAAGGAATGCA-GAACTGGTTCTGAC  948

seq1  TATCTTGGCTGACTCATTGACCATCTGGTAGCCCAGCGCCTCCTGCTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGCTGACTCATTGACCATCTGGTAGCCCAGCGCCTCCTGCTCAC  998

seq1  CCCCCTTTTTATAGAGAGCATAGTTAAAAGCTGAAACATTAACCAG-ATA  1049
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCCCTTTTTATAGAGAGCATAGTTAAAAGCTGAAACATTAACCAGAATA  1048

seq1  CAATGTCGACTCAGATAAGCCCCCAGCTTCAGAATCC-TTATACGCCCCG  1098
      |||||||||||||||| |||| ||||||||||| ||| ||||||||||||
seq2  CAATGTCGACTCAGAT-AGCCTCCAGCTTCAGATTCCTTTATACGCCCCG  1097

seq1  GCCTGCACGTACTACTCTGCTGA-CTCATAATCAT-GTTGCTGATGTTTG  1146
      ||||||||||||||||||||||| ||||||||||| |||||||||| |||
seq2  GCCTGCACGTACTACTCTGCTGACCTCATAATCATGGTTGCTGATG-TTG  1146

seq1  AATGGGCCAATCGTATGTAACCGCGCCAATTCTTCCTAGCCCCTAAACCC  1196
      ||||||||||||| |||| |||||| | | ||||||||||||    | ||
seq2  AATGGGCCAATCGAATGT-ACCGCGACGAATCTTCCTAGCCC---TATCC  1192

seq1  TA-CCCTATAAAAACCTCGAGTTTTTG  1222
      || |||||| |||  |||||| |||||
seq2  TATCCCTAT-AAACTCTCGAGATTTTG  1218