BAC Information

Click to search

BAC

Clone NameB6Ng01-087C05
Chromosome1 (Build37)
Map Location 27,833,868 - 27,973,949
singlet/doubletdoublet
Overlap geneEG433281
Upstream geneLOC677427, LOC100040952
Downstream geneEG665903, Gm597, LOC435614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087C05.bB6Ng01-087C05.g
ACCDH900349DH900350
length1,1071,177
definitionDH900349|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C05, 5' end.DH900350|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,972,837 - 27,973,949)(27,833,868 - 27,835,052)
sequence
gaattcacaagacgactgtgggcttccataaatgagatgtttctatttaa
gaatgacacaagggaaagcttaaaatggattgtgagttcctagtctaaga
agtaaggcagtttagtattccatatatgatgaaaaaggtttgcttttggg
tataaggaatttggctgaaatgaattgtcatagtctgataaaggtgataa
ataatgattttataattgactacccttctgtatatctgaatctttgccat
cactgttgaattaggtgagtcattttaaacctatacttgttccatgtcat
aaaaatgacccatgaagaacaatccataaattagaattccaatgtcctaa
tggattgtattatctccttgatttttacagtaaccgagtacagatataag
ttgagtaacaaacaaacttgcacagaattagaatggctgcatctgcacat
ataatagagttttataagaatctacagatatttattacaaaatatacacc
atgttctgtaaagtttaagttcaatactttatcttatcactttttattag
aataaccatatacttattaagctttctaagttgatctatcattatttatg
aaacatgtaaataaattataatgagattgtaagttcatacatttctcttt
ataaaaataaaacatgaaaatatctgtgtaacttgatcgagtcaaatgtg
cttttgtggcttgcaatgaagaagtgtcagaacaaaaagaaataactgta
gcccaaagagaaaatgagggaaaaccaaatgtagccaaagctcgtgataa
gctacctaaaaagtatagggaaatgtatggatgacatgctgcaaagacat
gagctatgctgaatataactccaattgctacttcagtgggagaagaggtc
ttcaaatgttggctatgtgatctctgcaatgaactaccggcagtcttact
ctcacgaaaaacccagagacaccattcatcttaagctcagttaggtgttt
tgatgagacagtgattctttcagcagatgtgtcatcctttcagaaggact
cctcctgtactgtgacaccacgaagcagtgccaggcccatttcagaggaa
atctctt
gaattctctaacagatgaagaaaaacctgagggacctatgatggaataaa
atatttcaatccaaggtgcttttggtcatgtgatttgatcacaggaatgg
aaatcctaacaagtatacacgaaaactttagacacaaatattctgctatt
tatgtttacctagatttctagagttatgtatttactagaagtaacaagct
cacttttgcatcataaataatttcttatagtacagtaagtgtatttttta
taatagaaccacattcattcactaatacaaaatctgtggggcaattatct
ctaattaggataactgaagtgggaagaaccattgatgtaggtgacatcat
ttactattaggggatgagactctaggctgtataaatataaaactgagtaa
atattattcatgtaattctgggaataatgaggtcattactcaagatttcc
ttagctgagatctttcctttataatgggttgtctcttcagttgtcagatg
tctggagacacatccagcataaagctgagaaggagagacaaagtccagat
accatttgatctcaaggattattcattacaatgataagcattagctcccg
ggctcattaggcacacaggcaaggctcaatatctttcagttgctcagtgt
gtctcagaagggctccttcctctggatcttcttatcttaaggcagccagg
gtagcagtcagtttcgtcaggtgggagagccaaagaacaagatggtcttc
acagtggcagaatcaaggtctctgcctgcctgatgtgagcctttgtttct
atcttctattaacaaagggaggtcattctctagcattacatatttgagta
gtatttcatttttatcatctacacacaaagctgacatgagctggagagct
ggtgtgaactggttgctcctccaaatcttacctactacagataactgaca
ttacttaacttctcctccctgtcacatttaattgagtcttgttctaattt
cttctttttcatacatttttgtacttcttttttctaaactccagaatttt
attccctcccactcttaccctccaaatgttgcacaatcctatacctcctc
cccacaccctgtcttcatgaatatgttcacaccacccaccaatctgactt
ctaaacccttggacctcagtcttgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_27972837_27973949
seq2: B6Ng01-087C05.b_46_1152 (reverse)

seq1  AAGAGATTTCCTCTGAAATGGGCCTGGCCACTGCTTCCGTGGTGTCACAG  50
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  AAGAGATTTCCTCTGAAATGGGCCTGG-CACTGCTT-CGTGGTGTCACAG  48

seq1  TAACAGGAGGGAGTCCTTCTGGAAGGATGACACATCTGCTGAAAGAATCA  100
      | |||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  T-ACAGGA-GGAGTCCTTCTGAAAGGATGACACATCTGCTGAAAGAATCA  96

seq1  CTGTCTCATCAAAAACACCCTAACTGAGCTTAAGATGAATGGTGTCTCTG  150
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  CTGTCTCATC-AAAACA-CCTAACTGAGCTTAAGATGAATGGTGTCTCTG  144

seq1  GGTTTTTCGTGAGAGTAAGACTGCCGGTAGTTCATTGCAGAGATCACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCGTGAGAGTAAGACTGCCGGTAGTTCATTGCAGAGATCACATA  194

seq1  GCCAACATTTGAAGACCTCTTCTCCCACTGAAGTAGCAATTGGAGTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATTTGAAGACCTCTTCTCCCACTGAAGTAGCAATTGGAGTTATA  244

seq1  TTCAGCATAGCTCATGTCTTTGCAGCATGTCATCCATACATTTCCCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATAGCTCATGTCTTTGCAGCATGTCATCCATACATTTCCCTATA  294

seq1  CTTTTTAGGTAGCTTATCACGAGCTTTGGCTACATTTGGTTTTCCCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGGTAGCTTATCACGAGCTTTGGCTACATTTGGTTTTCCCTCAT  344

seq1  TTTCTCTTTGGGCTACAGTTATTTCTTTTTGTTCTGACACTTCTTCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTGGGCTACAGTTATTTCTTTTTGTTCTGACACTTCTTCATTG  394

seq1  CAAGCCACAAAAGCACATTTGACTCGATCAAGTTACACAGATATTTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCACAAAAGCACATTTGACTCGATCAAGTTACACAGATATTTTCAT  444

seq1  GTTTTATTTTTATAAAGAGAAATGTATGAACTTACAATCTCATTATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTTTATAAAGAGAAATGTATGAACTTACAATCTCATTATAATT  494

seq1  TATTTACATGTTTCATAAATAATGATAGATCAACTTAGAAAGCTTAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATGTTTCATAAATAATGATAGATCAACTTAGAAAGCTTAATAA  544

seq1  GTATATGGTTATTCTAATAAAAAGTGATAAGATAAAGTATTGAACTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGGTTATTCTAATAAAAAGTGATAAGATAAAGTATTGAACTTAAA  594

seq1  CTTTACAGAACATGGTGTATATTTTGTAATAAATATCTGTAGATTCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGAACATGGTGTATATTTTGTAATAAATATCTGTAGATTCTTAT  644

seq1  AAAACTCTATTATATGTGCAGATGCAGCCATTCTAATTCTGTGCAAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTATTATATGTGCAGATGCAGCCATTCTAATTCTGTGCAAGTTT  694

seq1  GTTTGTTACTCAACTTATATCTGTACTCGGTTACTGTAAAAATCAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTACTCAACTTATATCTGTACTCGGTTACTGTAAAAATCAAGGAG  744

seq1  ATAATACAATCCATTAGGACATTGGAATTCTAATTTATGGATTGTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACAATCCATTAGGACATTGGAATTCTAATTTATGGATTGTTCTTC  794

seq1  ATGGGTCATTTTTATGACATGGAACAAGTATAGGTTTAAAATGACTCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCATTTTTATGACATGGAACAAGTATAGGTTTAAAATGACTCACC  844

seq1  TAATTCAACAGTGATGGCAAAGATTCAGATATACAGAAGGGTAGTCAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAACAGTGATGGCAAAGATTCAGATATACAGAAGGGTAGTCAATT  894

seq1  ATAAAATCATTATTTATCACCTTTATCAGACTATGACAATTCATTTCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCATTATTTATCACCTTTATCAGACTATGACAATTCATTTCAGC  944

seq1  CAAATTCCTTATACCCAAAAGCAAACCTTTTTCATCATATATGGAATACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCTTATACCCAAAAGCAAACCTTTTTCATCATATATGGAATACT  994

seq1  AAACTGCCTTACTTCTTAGACTAGGAACTCACAATCCATTTTAAGCTTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCCTTACTTCTTAGACTAGGAACTCACAATCCATTTTAAGCTTTC  1044

seq1  CCTTGTGTCATTCTTAAATAGAAACATCTCATTTATGGAAGCCCACAGTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTCATTCTTAAATAGAAACATCTCATTTATGGAAGCCCACAGTC  1094

seq1  GTCTTGTGAATTC  1113
      |||||||||||||
seq2  GTCTTGTGAATTC  1107

seq1: chr1_27833868_27835052
seq2: B6Ng01-087C05.g_68_1244

seq1  GAATTCTCTAACAGATGAAGAAAAACCTGAGGGACCTATGATGGAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAACAGATGAAGAAAAACCTGAGGGACCTATGATGGAATAAA  50

seq1  ATATTTCAATCCAAGGTGCTTTTGGTCATGTGATTTGATCACAGGAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAATCCAAGGTGCTTTTGGTCATGTGATTTGATCACAGGAATGG  100

seq1  AAATCCTAACAAGTATACACGAAAACTTTAGACACAAATATTCTGCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTAACAAGTATACACGAAAACTTTAGACACAAATATTCTGCTATT  150

seq1  TATGTTTACCTAGATTTCTAGAGTTATGTATTTACTAGAAGTAACAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTACCTAGATTTCTAGAGTTATGTATTTACTAGAAGTAACAAGCT  200

seq1  CACTTTTGCATCATAAATAATTTCTTATAGTACAGTAAGTGTATTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTGCATCATAAATAATTTCTTATAGTACAGTAAGTGTATTTTTTA  250

seq1  TAATAGAACCACATTCATTCACTAATACAAAATCTGTGGGGCAATTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAACCACATTCATTCACTAATACAAAATCTGTGGGGCAATTATCT  300

seq1  CTAATTAGGATAACTGAAGTGGGAAGAACCATTGATGTAGGTGACATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAGGATAACTGAAGTGGGAAGAACCATTGATGTAGGTGACATCAT  350

seq1  TTACTATTAGGGGATGAGACTCTAGGCTGTATAAATATAAAACTGAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTAGGGGATGAGACTCTAGGCTGTATAAATATAAAACTGAGTAA  400

seq1  ATATTATTCATGTAATTCTGGGAATAATGAGGTCATTACTCAAGATTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTCATGTAATTCTGGGAATAATGAGGTCATTACTCAAGATTTCC  450

seq1  TTAGCTGAGATCTTTCCTTTATAATGGGTTGTCTCTTCAGTTGTCAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAGATCTTTCCTTTATAATGGGTTGTCTCTTCAGTTGTCAGATG  500

seq1  TCTGGAGACACATCCAGCATAAAGCTGAGAAGGAGAGACAAAGTCCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGACACATCCAGCATAAAGCTGAGAAGGAGAGACAAAGTCCAGAT  550

seq1  ACCATTTGATCTCAAGGATTATTCATTACAATGATAAGCATTAGCTCCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGATCTCAAGGATTATTCATTACAATGATAAGCATTAGCTCCCG  600

seq1  GGCTCATTAGGCACACAGGCAAGGCTCAATATCTTTCAGTTGCTCAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTAGGCACACAGGCAAGGCTCAATATCTTTCAGTTGCTCAGTGT  650

seq1  GTCTCAGAAGGGCTCCTTCCTCTGGATCTTCTTATCTTAAGGCAGCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAAGGGCTCCTTCCTCTGGATCTTCTTATCTTAAGGCAGCCAGG  700

seq1  GTAGCAGTCAGTTTCGTCAGGTGGGAGAGCCAAAGAACAAGATGGTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGTCAGTTTCGTCAGGTGGGAGAGCCAAAGAACAAGATGGTCTTC  750

seq1  ACAGTGGCAGAATCAAGGTCTCTGCCTGCCTGATGTGAGCCTTTGTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCAGAATCAAGGTCTCTGCCTGCCTGATGTGAGCCTTTGTTTCT  800

seq1  ATCTTCTATTAACAAGGGGAGGTCATTCTCTAGCATTACATATTTGAGTA  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCTTCTATTAACAAAGGGAGGTCATTCTCTAGCATTACATATTTGAGTA  850

seq1  GTATTTCATTTTTATCATCTACACACAAAGCTGACATGAGCTGGAGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCATTTTTATCATCTACACACAAAGCTGACATGAGCTGGAGAGCT  900

seq1  GGTGTGAACTGGTTGCTCCTCCAAATCTTACCTACTACAGATAACTGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAACTGGTTGCTCCTCCAAATCTTACCTACTACAGATAACTGACA  950

seq1  TTACTTAACTTCTCCTCCCTGTCACATTTAATTGAGTCTTGTTCTAATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAACTTCTCCTCCCTGTCACATTTAATTGAGTCTTGTTCTAATTT  1000

seq1  CTTCTTTTTCATACATTTTTTGTTACTTCTTTTTTCTTAAACTCCAGATT  1050
      ||||||||||||||||||||   ||||||||||||| ||||||||||| |
seq2  CTTCTTTTTCATACATTTTT--GTACTTCTTTTTTC-TAAACTCCAGAAT  1047

seq1  TTATTTCCCTCCCACTC-TACCCTCCAAATGTTGCAC-ATCCTATACCTC  1098
      ||  ||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TTTATTCCCTCCCACTCTTACCCTCCAAATGTTGCACAATCCTATACCTC  1097

seq1  CTCCCCACACCCCTGTCTCCATGAATATG-TCACAACCACCCACCAAATC  1147
      ||||||||| |||||||| |||||||||| |||| |||||||||| ||||
seq2  CTCCCCACA-CCCTGTCTTCATGAATATGTTCAC-ACCACCCACC-AATC  1144

seq1  TGACTTCTAAACCCCTTGGGACCTCAAGTCTCTTGAGG  1185
      ||||||||||||||  | ||||||||    ||||||||
seq2  TGACTTCTAAACCC--TTGGACCTCA---GTCTTGAGG  1177