BAC Information

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BAC

Clone NameB6Ng01-087D04
Chromosome1 (Build37)
Map Location 51,743,475 - 51,919,221
singlet/doubletdoublet
Overlap geneMyo1b
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneEG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087D04.bB6Ng01-087D04.g
ACCDH900395DH900396
length459900
definitionDH900395|Mus musculus domesticus DNA, BAC clone: B6Ng01-087D04, 5' end.DH900396|Mus musculus domesticus DNA, BAC clone: B6Ng01-087D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,918,757 - 51,919,221)(51,743,475 - 51,744,379)
sequence
ttactgtttcgagttgcattaaataactcgtggtgatttgcaaaggggtg
atttgttagatgtgatagaatttttgtatgtgataaaatgccgcatgtag
atttaagatatccaggagctgttgctggatgctggcccaggactgatgta
tacagaggtgtctagagaggtgtcaagggctctgcaaggctgtgccgtga
tcgctgctgttattatggttagcttttatcaaaacactgtcgtcctctca
tcaaaaatatacgcattgttgaaaacaaccccagctcatcatgagatgca
tataaaacaaccctagctcatcatgagatgcatataaataaacatgtgtg
ttcagtgttcactgtgagcagaaatgctgatgtggaaatagtttagagaa
tgtcttggctgaggaaaagattaatttgtcattgggatattggggtagtg
gtggtggta
gaattcagtttgacttgaaaaatgtggtcagcatctctctctctctctct
ctctctctctctctctctctctctctctctctctctctctctctcccccc
ggaatctgccagaaggaagcttgttccttttttagcactttcttttcttt
tttcaggcgtgtctgctgcatgctcagcactgcaaaaaaaaaaaggctgc
tctatgactatttttttttttaatgctccccatgtttcccatactgactt
tgatccacaaattctttcttcctctcatgtttatttaattgccttcctat
cagtgttctcaagaattgttaattcacctctttaaaaaaataaataccaa
ttttcccaaaaagaaaaatcattatgaaaatcacttgatgtgacctttgt
agactctttttttcttcctccacttacaattcatcaaggctatgatgagt
taattttcaaatttggaggacccaccctccatcctcaccttgggtaacaa
aaaactcacacaaatgatattctgatttcataccgtcagttcgtgcttgg
gaatgacaacgggaaaataatgagaaaaatcatgatttttacacacacac
acacacacacacacacacacacacacatacacacacacttgagcacactt
tgaaagttcagcttatcatggtccctttccattgtatttagtcttctggt
cccaaagggtctggaaataaaacctgtccagatagacaaaagaaagtcag
tgatcaggtctgcaggttagtcatacaacaaagatgttgaaaggtctata
gcccacttagttatttagagggggtgtatatatcctcccataggctcatg
ggggagtactattattagaaagggttaagagtgtgggcctatagaggaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51918757_51919221
seq2: B6Ng01-087D04.b_44_508 (reverse)

seq1  TACCACCACCACTACCCCAATATCCCAATGACAAATTAATCTTTTCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCACCACTACCCCAATATCCCAATGACAAATTAATCTTTTCCTCA  50

seq1  GCCAAGACATTCTCTAAACTATTTCCACATCAGCATTTCTGCTCACAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGACATTCTCTAAACTATTTCCACATCAGCATTTCTGCTCACAGTG  100

seq1  AACACTGAACACACATGTTTATTTATATGCATCTCATGATGAGCTAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAACACACATGTTTATTTATATGCATCTCATGATGAGCTAGGGT  150

seq1  TGTTTTATATGCATCTCATGATGAGCTGGGGTTGTTTTCAACAATGCGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATATGCATCTCATGATGAGCTGGGGTTGTTTTCAACAATGCGTA  200

seq1  TATTTTTGATGAGAGGACGACAGTGTTTTGATAAAAGCTAACCATAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGATGAGAGGACGACAGTGTTTTGATAAAAGCTAACCATAATAA  250

seq1  CAGCAGCGATCACGGCACAGCCTTGCAGAGCCCTTGACACCTCTCTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCGATCACGGCACAGCCTTGCAGAGCCCTTGACACCTCTCTAGAC  300

seq1  ACCTCTGTATACATCAGTCCTGGGCCAGCATCCAGCAACAGCTCCTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTATACATCAGTCCTGGGCCAGCATCCAGCAACAGCTCCTGGAT  350

seq1  ATCTTAAATCTACATGCGGCATTTTATCACATACAAAAATTCTATCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAATCTACATGCGGCATTTTATCACATACAAAAATTCTATCACAT  400

seq1  CTAACAAATCACCCCTTTGCAAATCACCACGAGTTATTTAATGCAACTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAAATCACCCCTTTGCAAATCACCACGAGTTATTTAATGCAACTCG  450

seq1  AAACAGTAAGAATTC  465
      |||||||||||||||
seq2  AAACAGTAAGAATTC  465

seq1: chr1_51743475_51744379
seq2: B6Ng01-087D04.g_69_967

seq1  GAATTCAGTTTGACTTGAAAAATGTGGTCAGCATCTCTCTCTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGACTTGAAAAATGTGGTCAGCATCTCTCTCTCTCTCTCT  50

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCC  100

seq1  GGAATCTTCCAGAAGGAAGCTTGTTCAACTTTGAGCACCAAGTAAGCAAG  150
      ||||||| ||||||||||||||||||   ||| |||||    |   |   
seq2  GGAATCTGCCAGAAGGAAGCTTGTTCCTTTTTTAGCACTTTCTTTTCTTT  150

seq1  GTCCAGGCGTGTCTGCTGCATGCTCAGCACTGCTCCTACGGCAAGGCTGC  200
       | ||||||||||||||||||||||||||||||    |    ||||||||
seq2  TTTCAGGCGTGTCTGCTGCATGCTCAGCACTGCAAAAAAAAAAAGGCTGC  200

seq1  TCTATGACTATTTTTTTTTTTAATGCAGCCCCATGTTTCCCATACTTTCT  250
      ||||||||||||||||||||||||||  ||||||||||||||||||  ||
seq2  TCTATGACTATTTTTTTTTTTAATGC-TCCCCATGTTTCCCATACTGACT  249

seq1  TTGATCCACAAATTCGTTCTTCCTCTAATGTTTATTTAATTGCCTTCCTA  300
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  TTGATCCACAAATTCTTTCTTCCTCTCATGTTTATTTAATTGCCTTCCTA  299

seq1  TCAGTGTTCTCAAGAATTGCTGATTCAGCTATTTAAAAATATAAATACCA  350
      ||||||||||||||||||| | ||||| || |||||||| ||||||||||
seq2  TCAGTGTTCTCAAGAATTGTTAATTCACCTCTTTAAAAAAATAAATACCA  349

seq1  ATTTTCCCAAAAAGAAAAATCATTATGAAAATCACTTGATGTGACCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCAAAAAGAAAAATCATTATGAAAATCACTTGATGTGACCTTTG  399

seq1  TAGACTCTTTTTTTCTTCCACCACTTAGAATTCATCAAGGCTATGATGAG  450
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  TAGACTCTTTTTTTCTTCCTCCACTTACAATTCATCAAGGCTATGATGAG  449

seq1  TTAGTTTTCAAATTTGGAGGACCCACCTTCCATCCTCACCTTGGGTATCA  500
      ||| ||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  TTAATTTTCAAATTTGGAGGACCCACCCTCCATCCTCACCTTGGGTAACA  499

seq1  GAAAACTCACACAAATGATATTCTGATTTCTTACCGTCATTTCGTGCTTT  550
       ||||||||||||||||||||||||||||| |||||||| ||||||||| 
seq2  AAAAACTCACACAAATGATATTCTGATTTCATACCGTCAGTTCGTGCTTG  549

seq1  CGAATGACAACGGGAAAATAATGAGAAAAACCATGAATTTTACACACACA  600
       ||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  GGAATGACAACGGGAAAATAATGAGAAAAATCATGATTTTTACACACACA  599

seq1  CACACACACACACACACACACACACACGCACACACACACGTGAGCACACC  650
      |||||||||||||||||||||||||||  |||||||||| ||||||||| 
seq2  CACACACACACACACACACACACACACATACACACACACTTGAGCACACT  649

seq1  TTGAAAGTTCAGCTAATCATGGTCCCTTTTCCATTGATTTTTACCACTTT  700
      |||||||||||||| ||||||||||| ||||||||| | ||||   ||| 
seq2  TTGAAAGTTCAGCTTATCATGGTCCC-TTTCCATTG-TATTTA-GTCTTC  696

seq1  TAGGTCCCCAAAGGGTCTGGAAATAGAAACTGTCCAAATAGAC-AAAGAA  749
      | ||| ||||||||||||||||||| || ||||||| |||||| ||||||
seq2  T-GGT-CCCAAAGGGTCTGGAAATAAAACCTGTCCAGATAGACAAAAGAA  744

seq1  AGTCAGTGATCAGGTCTGCAGGTCAGTCAGACAGCAAGGATGTTGAAAGT  799
      ||||||||||||||||||||||| ||||| ||| ||| ||||||||||| 
seq2  AGTCAGTGATCAGGTCTGCAGGTTAGTCATACAACAAAGATGTTGAAAGG  794

seq1  CCTATAGCCCAGCTCAGTTATTTAGA-GGGCTGTAAAATAACC-CCCATA  847
       |||||||||| || ||||||||||| ||| ||| | ||| || ||||||
seq2  TCTATAGCCCA-CTTAGTTATTTAGAGGGGGTGT-ATATATCCTCCCATA  842

seq1  GGCTCAT-GGGGAGTACTATTATTTGAAAGGTTTAAGTAGTGTGGTCTTA  896
      ||||||| |||||||||||||||| |||||| ||||| ||||||| | ||
seq2  GGCTCATGGGGGAGTACTATTATTAGAAAGGGTTAAG-AGTGTGGGCCTA  891

seq1  TTAGAGGAA  905
       ||||||||
seq2  -TAGAGGAA  899