BAC Information

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BAC

Clone NameB6Ng01-087K13
Chromosome1 (Build37)
Map Location 47,035,701 - 47,131,540
singlet/doubletdoublet
Overlap genenone
Upstream geneEG227054, LOC100042453, EG212225, Dnahc7b, LOC666855, Slc39a10
Downstream geneEG227061, LOC666869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087K13.bB6Ng01-087K13.g
ACCDH900724DH900725
length1,1601,197
definitionDH900724|Mus musculus domesticus DNA, BAC clone: B6Ng01-087K13, 5' end.DH900725|Mus musculus domesticus DNA, BAC clone: B6Ng01-087K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,130,368 - 47,131,540)(47,035,701 - 47,036,461)
sequence
gaattcaagaaaggccaaattgtgtaaggtttagtggaagtaagggtaag
tactgcagttggacatataaagaaagaactaattttaggtagagaaagtc
tttgcttggcaacaaaatgtgtcaacaacagttgtaaatgttagcagact
ttttttttaagtccaatttgaatcaatgctaagagtagctattgatagaa
agaagaattgtatgtgataacaatagcccaaatcaaaaagtggccctact
agctccttttatatagtcactaaaatgctaggatatagtcattagtcatt
atttcccagcaaggaatggtttcagctagatgtaaacactgttgagtgga
ccagcagcctgacaggaaaaaaacaaaacaaaacaaaacaaaacaaaaac
aaaaacaaaacaaaacaacaacaaaaaaacagtttcatgaagcagaaact
gagatattaacagaaaaaaaaatggaataggaataaagacacgtgtgaat
agttataacacacatgaaacactttccaacaagcttgctgttgctgttgt
tgttgttgttgttattgttattgttgttgttgtctaatcttcattgttca
taaagggattaacactttgatttctttttttttttaaagacttattttat
gatgagtatactgtagctgtcttcagacacaccagaagagggcattacag
atgggtgtgagccaccatgtggttgctgggaattgaactcaggacctatg
gaaaagcagtcagtgttcttaaccacggagccatctctccagcccaacac
tgatttctttctcttttgggggcatctcaatttttgtaagctgaagattg
aaatttccagacattaagaaaagaataactacttctagtctgcatctgct
tggggcaaatcagcctgcttctccctttgtctcaacacctcacagtctgc
agtgctctcatgagacctgctgcagcaggcacaggtagaatggctgctca
aatgaccatagagccaggacccaccaggtaccagcagaaggactcctccc
tactatgctgaagccctttccttctactctgcacatcatgggggcagatc
aggctgtctcccccttcctctcccaatacccacacaatctcagttcaggg
agattgctgc
gaattccttctttatgtcctctaccatcatcatgaaatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggactgggcaaagtg
ggcgttctgggttctgatgatggtgagtggtcctggtttctgttagtagg
attcttacgtttacctttcaccatctggcaatctctggaattagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttatcctcta
tcagcaggcgtgggagacaagctctctcctctgagtttcagtggtcagag
cagtctctgcaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgttgccgcctcagaagctctgtggctctcgccaggaaggtggc
cggccatctggagccgaagatggcgccgcctcagaagctctgtggctctc
gccaggaaggtggccggttgtctggagccgaagatggcgccgccccagaa
gctctgcgactctcgcccgtcccagaaacggctggtctctgtattccaca
cggtcacccgtgcagcctgtcctccgcggagtcccggagccaagaaggct
cctgccggcgcctgtgacacaaacctctcaggccaggcagacccccgtgc
tctcaccaggaaaggtggccggctgtctggagctgaagatggcgccgccc
cagaggctctgcgactctcgcccgtcccagaaacggctggcctctgtatt
ccacacggtcacccgtgcagcctgccctccacggagtcccggagccaaga
aggctcccgccggcgcctgtgacacaaacctctcagccggggcattttct
ttttagagtagcatacttcattatgcaggataaaactctgcactattacg
atgggttaatgatgagagctgtcatgtatttgtgatgagctgatatttct
agttgggtactgcatcagatttaagcagagctaccacctccacttccttg
caaatcctggcttaatcagatcctacaagtgtagcttaatacgtgttatt
cttacctggtttagctgaggtctcagccaagccctcccttgggcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_47130368_47131540
seq2: B6Ng01-087K13.b_42_1201 (reverse)

seq1  GCAGCAAATCTCCTGGGAACCCTGAAGATTGTGT-GGTATTGAGAGAG--  47
      ||||| |||||||  | |   ||| ||||||||| ||||||| |||||  
seq2  GCAGC-AATCTCCCTGAA---CTG-AGATTGTGTGGGTATTGGGAGAGGA  45

seq1  AGGGGGAGACAGGCTGATCTGCCCCCATGATGGTGCAGAGTAGAAGGGAA  97
      |||||||||||| |||||||||||||||||| ||||||||||||| ||||
seq2  AGGGGGAGACAGCCTGATCTGCCCCCATGAT-GTGCAGAGTAGAA-GGAA  93

seq1  AGGGCTTTCAAGCATAGTAGGGAGGAGTTCCCTGTCTGCTGGGTACCTGG  147
      |||||||   ||||||||||||||||||  ||| |||||| |||||||||
seq2  AGGGCTT--CAGCATAGTAGGGAGGAGT--CCT-TCTGCT-GGTACCTGG  137

seq1  TGGGTCCTGGCTTCTATGGTCATTTGGGCAGCCATTCTACCTGTTGCCCT  197
      ||||||||||| |||||||||||||| |||||||||||||||||   |||
seq2  TGGGTCCTGGC-TCTATGGTCATTTGAGCAGCCATTCTACCTGT--GCCT  184

seq1  GCTGCAGCAGGTCTCATGAGAGCACTGCAGACTGTGAGGTGTTGAGACAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCAGGTCTCATGAGAGCACTGCAGACTGTGAGGTGTTGAGACAA  234

seq1  AGGGAGAAGCAGGCTGATTTGCCCCAAGCAGATGCAGACTAGAAGTAGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGCAGGCTGATTTGCCCCAAGCAGATGCAGACTAGAAGTAGTT  284

seq1  ATTCTTTTCTTAATGTCTGGAAATTTCAATCTTCAGCTTACAAAAATTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCTTAATGTCTGGAAATTTCAATCTTCAGCTTACAAAAATTGA  334

seq1  GATGCCCCCAAAAGAGAAAGAAATCAGTGTTGGGCTGGAGAGATGGCTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCCCAAAAGAGAAAGAAATCAGTGTTGGGCTGGAGAGATGGCTCC  384

seq1  GTGGTTAAGAACACTGACTGCTTTTCCATAGGTCCTGAGTTCAATTCCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAGAACACTGACTGCTTTTCCATAGGTCCTGAGTTCAATTCCCA  434

seq1  GCAACCACATGGTGGCTCACACCCATCTGTAATGCCCTCTTCTGGTGTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCACATGGTGGCTCACACCCATCTGTAATGCCCTCTTCTGGTGTGT  484

seq1  CTGAAGACAGCTACAGTATACTCATCATAAAATAAGTCTTTAAAAAAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACAGCTACAGTATACTCATCATAAAATAAGTCTTTAAAAAAAAA  534

seq1  AAGAAATCAAAGTGTTAATCCCTTTATGAACAATGAAGATTAGACAACAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCAAAGTGTTAATCCCTTTATGAACAATGAAGATTAGACAACAA  584

seq1  CAACAATAACAATAACAACAACAACAACAACAGCAACAGCAAGCTTGTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATAACAATAACAACAACAACAACAACAGCAACAGCAAGCTTGTTG  634

seq1  GAAAGTGTTTCATGTGTGTTATAACTATTCACACGTGTCTTTATTCCTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTTTCATGTGTGTTATAACTATTCACACGTGTCTTTATTCCTAT  684

seq1  TCCATTTTTTTTTCTGTTAATATCTCAGTTTCTGCTTCATGAAACTGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTTTTTTCTGTTAATATCTCAGTTTCTGCTTCATGAAACTGTTT  734

seq1  TTTTGTTGTTGTTTTGTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTGTTTTGTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTT  784

seq1  TTGTTTTTTTCCTGTCAGGCTGCTGGTCCACTCAACAGTGTTTACATCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTCCTGTCAGGCTGCTGGTCCACTCAACAGTGTTTACATCTA  834

seq1  GCTGAAACCATTCCTTGCTGGGAAATAATGACTAATGACTATATCCTAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACCATTCCTTGCTGGGAAATAATGACTAATGACTATATCCTAGC  884

seq1  ATTTTAGTGACTATATAAAAGGAGCTAGTAGGGCCACTTTTTGATTTGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTGACTATATAAAAGGAGCTAGTAGGGCCACTTTTTGATTTGGG  934

seq1  CTATTGTTATCACATACAATTCTTCTTTCTATCAATAGCTACTCTTAGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTATCACATACAATTCTTCTTTCTATCAATAGCTACTCTTAGCA  984

seq1  TTGATTCAAATTGGACTTAAAAAAAAAGTCTGCTAACATTTACAACTGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCAAATTGGACTTAAAAAAAAAGTCTGCTAACATTTACAACTGTT  1034

seq1  GTTGACACATTTTGTTGCCAAGCAAAGACTTTCTCTACCTAAAATTAGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACACATTTTGTTGCCAAGCAAAGACTTTCTCTACCTAAAATTAGTT  1084

seq1  CTTTCTTTATATGTCCAACTGCAGTACTTACCCTTACTTCCACTAAACCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTATATGTCCAACTGCAGTACTTACCCTTACTTCCACTAAACCT  1134

seq1  TACACAATTTGGCCTTTCTTGAATTC  1173
      ||||||||||||||||||||||||||
seq2  TACACAATTTGGCCTTTCTTGAATTC  1160

seq1: chr1_47035701_47036461
seq2: B6Ng01-087K13.g_523_1262

seq1  GTTGCCGCCTCAGAAGCTCTGTGGCTCTCGCCAGGAAGGTGGCCGGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCGCCTCAGAAGCTCTGTGGCTCTCGCCAGGAAGGTGGCCGGCCAT  50

seq1  CTGGAGCCGAAGATGGCGCCGCCTCAGAAGCTCTGTGGCTCTCGCCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCGAAGATGGCGCCGCCTCAGAAGCTCTGTGGCTCTCGCCAGGA  100

seq1  AGGTGGCCGGTTGTCTGGAGCCGAAGATGGCGCCGCCCCAGAAGCTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCCGGTTGTCTGGAGCCGAAGATGGCGCCGCCCCAGAAGCTCTGC  150

seq1  GACTCTCGCCCGTCCCAGAAACGGCTGGTCTCTGTATTCCACACGGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCGCCCGTCCCAGAAACGGCTGGTCTCTGTATTCCACACGGTCAC  200

seq1  CCGTGCAGCCTGTCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCCTGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCAGCCTGTCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCCTGCCG  250

seq1  GCGCCTGTGACACAAACCTCTCAGGCCAGGCAGACCCCCGTGCTCTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTGTGACACAAACCTCTCAGGCCAGGCAGACCCCCGTGCTCTCACC  300

seq1  AGG-AAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCCGCCCCAGAGGC  349
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCCGCCCCAGAGGC  350

seq1  TCTGCGACTCTCGCCCGTCCCAGAAACGGCTGGCCTCTGTATTCCACACG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGACTCTCGCCCGTCCCAGAAACGGCTGGCCTCTGTATTCCACACG  400

seq1  GTCACCCGTGCAGCCTGCCCTCCACGGAGTCCCGGAGCCAAGAAGGCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCGTGCAGCCTGCCCTCCACGGAGTCCCGGAGCCAAGAAGGCTCC  450

seq1  CGCCGGCGCCTGTGACACAAACCTCTCAGGCCGGGGCATTTTTCTTTTTA  499
      |||||||||||||||||||||||||||| ||||||||| |||||||||| 
seq2  CGCCGGCGCCTGTGACACAAACCTCTCA-GCCGGGGCA-TTTTCTTTTT-  497

seq1  AGAGTAGCATACTTCAATTATGCAGGATAAAAACTCTGCACTATTACGAT  549
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  AGAGTAGCATACTTC-ATTATGCAGGAT-AAAACTCTGCACTATTACGAT  545

seq1  GGGTTAATGAATGAGAGCTGTCAATGTATTTGTGATGAGCTGATA-TTCT  598
      ||||||||| |||||||||||| |||||||||||||||||||||| ||||
seq2  GGGTTAATG-ATGAGAGCTGTC-ATGTATTTGTGATGAGCTGATATTTCT  593

seq1  AGGTTGTGTACTGCATTCAGATTTAAGCCAAGAGCTA-CATCTCCAC-TA  646
      | |||| |||||||| ||||||||||||  ||||||| || |||||| | 
seq2  A-GTTGGGTACTGCA-TCAGATTTAAGC--AGAGCTACCACCTCCACTTC  639

seq1  CTTGCAAAATCCCTGGCTTAAATCAGATTCTACAAAGTGTTAGCTAAATA  696
      ||||||||   |||||||| |||||||| |||| ||||| ||||| ||| 
seq2  CTTGCAAA--TCCTGGCTT-AATCAGATCCTAC-AAGTG-TAGCTTAAT-  683

seq1  AACAGTTGTTATCCTAACTTGTTTTTAGCTGAGGTCCTCCAGCCAAACAG  746
         |  |||||| || || ||  |||||||||||||   ||||||   ||
seq2  ---ACGTGTTATTCTTACCTG-GTTTAGCTGAGGTC--TCAGCCA---AG  724

seq1  CCCTCCC-TGGGCTTG  761
      ||||||| ||||||||
seq2  CCCTCCCTTGGGCTTG  740