BAC Information

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BAC

Clone NameB6Ng01-087L18
Chromosome1 (Build37)
Map Location 138,258,077 - 138,422,897
singlet/doubletdoublet
Overlap gene9230116N13Rik, Ddx59, Kif14
Upstream geneLmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1
Downstream geneZfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087L18.bB6Ng01-087L18.g
ACCDH900778DH900779
length1,1891,134
definitionDH900778|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L18, 5' end.DH900779|Mus musculus domesticus DNA, BAC clone: B6Ng01-087L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,421,697 - 138,422,897)(138,258,077 - 138,259,230)
sequence
gaattcaacctcacagtatttctttcaatatttactttacttaaatactt
cagctatgggcattactctccttttcggtacactgatttttatactccat
ctctctttgtctataaagtgtgacctgtgacatgagtatatattaattct
cctctagttgacactgtttgagcacattagtgttaaatgtgttctttagt
ctatagtgactacagtcaggcacaagctggcagctcctaggctagtaact
aagaaacagggggtgcattagcaggcccctggccaccatagacctagtac
tacacgagtgcattaagtctgccaaagaaagactaggaaacaagcatgct
cggtgagcatgcacagcagagctgtctccagctggggctgccaagggaaa
taaatatatctacaaaggaaccaaacgcagtgacaaacaaaaaacaatgc
aaagctcctcctaccgtcctccattcagcgacagcattttccagagaccc
gacccactccacagtactggctttcatctgcttagtgacctagagaaatg
ttaaaatatttcagtaaacacgcaatcaccaggaaacacaattcttaggc
ccctgcgagaccagacagggagctctggtctagaatccagaagagataaa
agtttcataagccagctcgagggttcttcaaaccatataagtggaattcc
ttcagaataaacgacacattgatttccatatagcacggctgaactgggct
cagcggcacaagcctgaggacctaacgttgaccctggtgaatgactccac
aaagctgtctcctgacatccacatatgtgacatgacacacaggtctccac
acgcacacatacactaataataaaatataaatataagagaggatatattc
tgatgtgtaactatctcaaaatttgccttttatttaaatatttataggca
tgaaacttctctcagaagaaagcgagggtttgaattatcaaaaaatatga
ggtgctttgagaaagttacaaatgttatgtgatccagtgtgatctatgct
gcaccatgcattcccaccttaccacctgacaaatcagaccagaatgggac
tcctggctctccacagtgggtgccaggtctaacttaatcaacatgagcct
agctgccttgctcactgctaccctcagtggaggcaagct
gaattcaacattccatttcttaaaggagtgccaaggggttaaaggtttat
ttagctcagtgatggtgcccttgttcatgctcaagaccccggattctgtc
ccctgtacacacacaccaaacacccaggcataaagagtgctgaggctggg
gacatgactcagagaggaagagcccttactgtgcaaacatcatgacctgg
ttttaaattcccagcatccacataaaaggttacacatggctgtgtgtgct
tctatccccagtactgaagcgggcaggagcgtcctggcatctcacgggcc
ggccagccttgctatactggaaagcttcagttcagcatgggacccaggca
ataaggcagagagcaatagaagacaactcaggtcttcttcaggccttcaa
atttgtgtgcatgagtacatgtgcccacacactcacacatacacataccc
accatgtcttcatttaaaaagctcttgaggaaaattaaaagcagcattca
atttagaaaaaaagaatcatttggactctgtgttgctccagctgataaat
agctgcaaaaaaaaaaaaaatctcaactcatagcaaatcataactcatag
cattgaatcgtgttctccagacattccgtgggcctggagaaagggctcaa
gcaaacaatgccagggacagttctgcgacagacgggcaagccaagtggaa
gggtgagccaagagacctccaaggctgttcaccctgagacctccagcact
tcagtagttagttacagctttatggaattagaaaacaggggtctgtgcta
tttttaaaaatatatatatttattttagcttagaacattaagtgattttt
tttaaaccccaagatgtttttaaaccgtgttaacagaaccccaggtactt
ctttgaaaaattgtctaaaaccaagttgcctcactttttccaagctctta
ccagatcccgaacaggagcaaactatgttacgtaatgcagcctgcccagg
tatggttttgatcaaatgtctcattaagtactttttaaatgccccccgac
ccccaatgggaaccatcaagaaagaaggaaatgagctcaaatgtctgttg
ctcccttgatgtctgtttcaggtgtaaaggtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138421697_138422897
seq2: B6Ng01-087L18.b_47_1235 (reverse)

seq1  AGCTTGCCTCCACCTGAGGGGGCAGCAGTGAGCAGAGGCCCAGCCAAGGC  50
      |||||||||||| ||||  ||| ||||||||||| |||  ||| | ||||
seq2  AGCTTGCCTCCA-CTGA--GGGTAGCAGTGAGCA-AGG--CAG-CTAGGC  43

seq1  TTCACTGTTGATTTAGTTTAAGA-CTTGCA-CCACTGT-GAGAGCCAGGA  97
       ||| |||||||| ||||  ||| || ||| ||||||| |||||||||||
seq2  -TCA-TGTTGATTAAGTT--AGACCTGGCACCCACTGTGGAGAGCCAGGA  89

seq1  GTCCCCATCTGGGTCTGA-TTGTCA-GTGGTAAGGTGGGAAATGCCATGT  145
      |||||  ||| ||||||| |||||| ||||||||||||| |||||   ||
seq2  GTCCCATTCT-GGTCTGATTTGTCAGGTGGTAAGGTGGG-AATGCATGGT  137

seq1  GCAGCATAGATCACAACTGGGAATCACATAACATTTGTAACTTTCTCAAA  195
      |||||||||||||| |||||  ||||||||||||||||||||||||||||
seq2  GCAGCATAGATCAC-ACTGG--ATCACATAACATTTGTAACTTTCTCAAA  184

seq1  GCACCTCATATTTTTTTGATAATTCAAACCCTCGCTTTCTTCTGAGAGAA  245
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCATA-TTTTTTGATAATTCAAACCCTCGCTTTCTTCTGAGAGAA  233

seq1  GTTTCATGCCTATAAATATTTAAATAAAAGGCAAATTTTGAGATAGTTAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGCCTATAAATATTTAAATAAAAGGCAAATTTTGAGATAGTTAC  283

seq1  ACATCAGAATATATCCTCTCTTATATTTATATTTTATTATTAGTGTATGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAATATATCCTCTCTTATATTTATATTTTATTATTAGTGTATGT  333

seq1  GTGCGTGTGGAGACCTGTGTGTCATGTCACATATGTGGATGTCAGGAGAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGTGGAGACCTGTGTGTCATGTCACATATGTGGATGTCAGGAGAC  383

seq1  AGCTTTGTGGAGTCATTCACCAGGGTCAACGTTAGGTCCTCAGGCTTGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTGGAGTCATTCACCAGGGTCAACGTTAGGTCCTCAGGCTTGTG  433

seq1  CCGCTGAGCCCAGTTCAGCCGTGCTATATGGAAATCAATGTGTCGTTTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGAGCCCAGTTCAGCCGTGCTATATGGAAATCAATGTGTCGTTTAT  483

seq1  TCTGAAGGAATTCCACTTATATGGTTTGAAGAACCCTCGAGCTGGCTTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGAATTCCACTTATATGGTTTGAAGAACCCTCGAGCTGGCTTAT  533

seq1  GAAACTTTTATCTCTTCTGGATTCTAGACCAGAGCTCCCTGTCTGGTCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTTATCTCTTCTGGATTCTAGACCAGAGCTCCCTGTCTGGTCTC  583

seq1  GCAGGGGCCTAAGAATTGTGTTTCCTGGTGATTGCGTGTTTACTGAAATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGCCTAAGAATTGTGTTTCCTGGTGATTGCGTGTTTACTGAAATA  633

seq1  TTTTAACATTTCTCTAGGTCACTAAGCAGATGAAAGCCAGTACTGTGGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACATTTCTCTAGGTCACTAAGCAGATGAAAGCCAGTACTGTGGAG  683

seq1  TGGGTCGGGTCTCTGGAAAATGCTGTCGCTGAATGGAGGACGGTAGGAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCGGGTCTCTGGAAAATGCTGTCGCTGAATGGAGGACGGTAGGAGG  733

seq1  AGCTTTGCATTGTTTTTTGTTTGTCACTGCGTTTGGTTCCTTTGTAGATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCATTGTTTTTTGTTTGTCACTGCGTTTGGTTCCTTTGTAGATA  783

seq1  TATTTATTTCCCTTGGCAGCCCCAGCTGGAGACAGCTCTGCTGTGCATGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTCCCTTGGCAGCCCCAGCTGGAGACAGCTCTGCTGTGCATGC  833

seq1  TCACCGAGCATGCTTGTTTCCTAGTCTTTCTTTGGCAGACTTAATGCACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGAGCATGCTTGTTTCCTAGTCTTTCTTTGGCAGACTTAATGCACT  883

seq1  CGTGTAGTACTAGGTCTATGGTGGCCAGGGGCCTGCTAATGCACCCCCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAGTACTAGGTCTATGGTGGCCAGGGGCCTGCTAATGCACCCCCTG  933

seq1  TTTCTTAGTTACTAGCCTAGGAGCTGCCAGCTTGTGCCTGACTGTAGTCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGTTACTAGCCTAGGAGCTGCCAGCTTGTGCCTGACTGTAGTCA  983

seq1  CTATAGACTAAAGAACACATTTAACACTAATGTGCTCAAACAGTGTCAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACTAAAGAACACATTTAACACTAATGTGCTCAAACAGTGTCAAC  1033

seq1  TAGAGGAGAATTAATATATACTCATGTCACAGGTCACACTTTATAGACAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGAATTAATATATACTCATGTCACAGGTCACACTTTATAGACAA  1083

seq1  AGAGAGATGGAGTATAAAAATCAGTGTACCGAAAAGGAGAGTAATGCCCA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATGGAGTATAAAAATCAGTGTACCGAAAAGGAGAGTAATGCCCA  1133

seq1  TAGCTGAAGTATTTAAGTAAAGTAAATATTGAAAGAAATACTGTGAGGTT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAAGTATTTAAGTAAAGTAAATATTGAAAGAAATACTGTGAGGTT  1183

seq1  GAATTC  1201
      ||||||
seq2  GAATTC  1189

seq1: chr1_138258077_138259230
seq2: B6Ng01-087L18.g_68_1201

seq1  GAATTCAACATTCCATTTCTTAAAGGAGTGCCAAGGGGTTAAAGGTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATTCCATTTCTTAAAGGAGTGCCAAGGGGTTAAAGGTTTAT  50

seq1  TTAGCTCAGTGATGGTGCCCTTGTTCATGCTCAAGACCCCGGATTCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCAGTGATGGTGCCCTTGTTCATGCTCAAGACCCCGGATTCTGTC  100

seq1  CCCTGTACACACACACCAAACACCCAGGCATAAAGAGTGCTGAGGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTACACACACACCAAACACCCAGGCATAAAGAGTGCTGAGGCTGGG  150

seq1  GACATGACTCAGAGAGGAAGAGCCCTTACTGTGCAAACATCATGACCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGACTCAGAGAGGAAGAGCCCTTACTGTGCAAACATCATGACCTGG  200

seq1  TTTTAAATTCCCAGCATCCACATAAAAGGTTACACATGGCTGTGTGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTCCCAGCATCCACATAAAAGGTTACACATGGCTGTGTGTGCT  250

seq1  TCTATCCCCAGTACTGAAGCGGGCAGGAGCGTCCTGGCATCTCACGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCCCAGTACTGAAGCGGGCAGGAGCGTCCTGGCATCTCACGGGCC  300

seq1  GGCCAGCCTTGCTATACTGGAAAGCTTCAGTTCAGCATGGGACCCAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTTGCTATACTGGAAAGCTTCAGTTCAGCATGGGACCCAGGCA  350

seq1  ATAAGGCAGAGAGCAATAGAAGACAACTCAGGTCTTCTTCAGGCCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCAGAGAGCAATAGAAGACAACTCAGGTCTTCTTCAGGCCTTCAA  400

seq1  ATTTGTGTGCATGAGTACATGTGCCCACACACTCACACATACACATACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTGCATGAGTACATGTGCCCACACACTCACACATACACATACCC  450

seq1  ACCATGTCTTCATTTAAAAAGCTCTTGAGGAAAATTAAAAGCAGCATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCTTCATTTAAAAAGCTCTTGAGGAAAATTAAAAGCAGCATTCA  500

seq1  ATTTAGAAAAAAAGAATCATTTGGACTCTGTGTTGCTCCAGCTGATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAAAAAAGAATCATTTGGACTCTGTGTTGCTCCAGCTGATAAAT  550

seq1  AGCTGCAAAAAAAAAAAAAATCTCAACTCATAGCAAATCATAACTCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAAAAAAAAAAAAAATCTCAACTCATAGCAAATCATAACTCATAG  600

seq1  CATTGAATCGTGTTCTCCAGACATTCCGTGGGCCTGGAGAAAGGGCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATCGTGTTCTCCAGACATTCCGTGGGCCTGGAGAAAGGGCTCAA  650

seq1  GCAAACAATGCCAGGGACAGTTCTGCGACAGACGGGCAAGCCAAGTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAATGCCAGGGACAGTTCTGCGACAGACGGGCAAGCCAAGTGGAA  700

seq1  GGGTGAGCCAAGAGACCTCCAAGGCTGTTCACCCTGAGACCTCCAGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGCCAAGAGACCTCCAAGGCTGTTCACCCTGAGACCTCCAGCACT  750

seq1  TCAGTAGTTAGTTACAGCTTTATGGAATTAGAAAACAGGGGTCTGTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTTAGTTACAGCTTTATGGAATTAGAAAACAGGGGTCTGTGCTA  800

seq1  TTTTTAAAAATATATATATTTATTTTAGCTTAGAACATTAAGTGATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATATATATATTTATTTTAGCTTAGAACATTAAGTGATTTTT  850

seq1  TTTAAACCCCAAGATGTTTTTAAAACCGTGTTAACAGAACCCCAGGTACT  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTAAACCCCAAGATGTTTTT-AAACCGTGTTAACAGAACCCCAGGTACT  899

seq1  TCTTTGAAAAAATTGTCTAAAACCAAGTTGCCTCACTTTTTCCAAGCTCT  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTG-AAAAATTGTCTAAAACCAAGTTGCCTCACTTTTTCCAAGCTCT  948

seq1  TACCAGATCCCGAACAGGAGCAAAACTATGTTACGTAATGCAGCCTGGCC  1000
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TACCAGATCCCGAACAGGAGC-AAACTATGTTACGTAATGCAGCCT-GCC  996

seq1  CAGGGTATGGTTTTGAATCAAATGTCTCATTAAAAGTACTTTTTAAATGC  1050
      || |||||||||||| |||||||||||||||  |||||||||||||||||
seq2  CA-GGTATGGTTTTG-ATCAAATGTCTCATT--AAGTACTTTTTAAATGC  1042

seq1  CCCCC-ACCCCCAAAATGGGAACACAAACAAGAAGAAAGAAAATGAAGCT  1099
      ||||| ||||||  |||||||  || | ||||||  ||| ||||| ||||
seq2  CCCCCGACCCCC--AATGGGA--ACCATCAAGAAAGAAGGAAATG-AGCT  1087

seq1  CAAATGTCTGGTTTGTCTCCCTTGGTATGTCTGTTTTCAGGGTGTAAAGG  1149
      ||||||||||  ||| ||||||||  ||||||| ||||| |||||||| |
seq2  CAAATGTCTG--TTG-CTCCCTTG--ATGTCTG-TTTCA-GGTGTAAA-G  1129

seq1  GTAAT  1154
      |||||
seq2  GTAAT  1134