BAC Information

Click to search

BAC

Clone NameB6Ng01-088A17
Chromosome1 (Build37)
Map Location 95,499,840 - 95,548,472
singlet/doubletdoublet
Overlap geneFarp2, Stk25
Upstream geneOlfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2
Downstream geneBok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088A17.bB6Ng01-088A17.g
ACCDH901008DH901009
length902683
definitionDH901008|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A17, 5' end.DH901009|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,547,956 - 95,548,472)(95,499,840 - 95,500,522)
sequence
gaattctgtccctagcactggcaaaaaaccaaaacagatgagagaggctg
gaaagatgactctgtggttaagagtgctcactggtctttcaatgacctgg
attcaattcccagaacccacatgatggcttacaaccatctataactccaa
ttccaagggatctgacgccctcttctgatctccatgggcaccagatacac
acatgttacacacatatatacacacaggccaaactcttattcacataaaa
taaataaatcttaaaaaattaaaatattgaagtcagagacatcatctttc
atgattgtaaaccatatttcaaagctatagcaatcaaaacagtaaggtgt
tggagtaaaaatagacacatagtcaaatggaacaggataaagcccagata
tgaatacaaagtttctttttcttttttttctttttttctttttttttggt
tttttgagacaggatttctctgtgtagccctggctgtcctggaacttact
ttgtagaccaggctggccttgaactcagagatccacctgcctgtgcctcc
caagtgctgggattaaaggcatgcgccaccacgctgggggggggggggaa
tacaaagtttctgtggtttgaacatttatccccttcaaaggccacgttgg
agtttactttcccattgcaatagtaataagtgataaggcttcaagcagca
atttggtctgagtgaactaatgccaacagagagacacctagccttgcctc
cttgtcctcccaccatggaaagataccgcaggaaggccctcaccatgtgc
cagcatcttgatttggccttttcagactttagatctgggcaggattaaaa
aaatagtcttcctttacagcttgtaaagtgttgaacatttggtatagtag
aa
gaattccaaaaattgtgctagctgagcagaacatgtggaagcccgggctc
tgctgaatgtgaaagggcagcatgtcccccagaaatacactcatggttct
ctctgcctctttcagcacatgccagaagatgaggcctatttcatagccaa
ggagattctcgctacagaacgaacctatctgaaggatttagaagttatca
ctgtggtatgaaaccttagtcctgatctctttgatttttcttctatgttt
tagatataaacacagatattccatcgtgagaaatatgttgatagacttgg
gagctacatgtggaaattctgttgaatatgtttgccttacagcatgatgt
ctaatcatgtcagaatgctcatgtcttgccaggcagtggtggtgaatacc
tttaatcccagcagtcagaaggcagaagcacaaagatcactgagttcaaa
gccagcctggtctacagagaaagttccaggacagccagggcaatacagag
aatccctgccttaaacaaacaaacaaaaagaatgctaatgtcttttcatg
aagctacaaagcttagaatatatctacctgaaagctttgatctaggattg
ctttgtttaaatttcacaattatacagtccacaaagaggatatgtggaat
gtggattttttgtttattttttgtttttgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95547956_95548472
seq2: B6Ng01-088A17.b_44_560 (reverse)

seq1  GCCAGCCTGGTCTACAAAGTAAGTTCCAGGACAGCCAGGGCTACACAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACAAAGTAAGTTCCAGGACAGCCAGGGCTACACAGAG  50

seq1  AAATCCTGTCTCAAAAAACCAAAAAAAAAGAAAAAAAGAAAAAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGTCTCAAAAAACCAAAAAAAAAGAAAAAAAGAAAAAAAAGAAA  100

seq1  AAGAAACTTTGTATTCATATCTGGGCTTTATCCTGTTCCATTTGACTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTTTGTATTCATATCTGGGCTTTATCCTGTTCCATTTGACTATG  150

seq1  TGTCTATTTTTACTCCAACACCTTACTGTTTTGATTGCTATAGCTTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATTTTTACTCCAACACCTTACTGTTTTGATTGCTATAGCTTTGAA  200

seq1  ATATGGTTTACAATCATGAAAGATGATGTCTCTGACTTCAATATTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTTACAATCATGAAAGATGATGTCTCTGACTTCAATATTTTAAT  250

seq1  TTTTTAAGATTTATTTATTTTATGTGAATAAGAGTTTGGCCTGTGTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGATTTATTTATTTTATGTGAATAAGAGTTTGGCCTGTGTGTAT  300

seq1  ATATGTGTGTAACATGTGTGTATCTGGTGCCCATGGAGATCAGAAGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGTAACATGTGTGTATCTGGTGCCCATGGAGATCAGAAGAGGG  350

seq1  CGTCAGATCCCTTGGAATTGGAGTTATAGATGGTTGTAAGCCATCATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGATCCCTTGGAATTGGAGTTATAGATGGTTGTAAGCCATCATGTG  400

seq1  GGTTCTGGGAATTGAATCCAGGTCATTGAAAGACCAGTGAGCACTCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGGAATTGAATCCAGGTCATTGAAAGACCAGTGAGCACTCTTAA  450

seq1  CCACAGAGTCATCTTTCCAGCCTCTCTCATCTGTTTTGGTTTTTTGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGTCATCTTTCCAGCCTCTCTCATCTGTTTTGGTTTTTTGCCAG  500

seq1  TGCTAGGGACAGAATTC  517
      |||||||||||||||||
seq2  TGCTAGGGACAGAATTC  517

seq1: chr1_95499840_95500522
seq2: B6Ng01-088A17.g_69_751

seq1  GAATTCCAAAAATTGTGCTAGCTGAGCAGAACATGTGGAAGCCCGGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAATTGTGCTAGCTGAGCAGAACATGTGGAAGCCCGGGCTC  50

seq1  TGCTGAATGTGAAAGGGCAGCATGTCCCCCAGAAATACACTCATGGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAATGTGAAAGGGCAGCATGTCCCCCAGAAATACACTCATGGTTCT  100

seq1  CTCTGCCTCTTTCAGCACATGCCAGAAGATGAGGCCTATTTCATAGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTTTCAGCACATGCCAGAAGATGAGGCCTATTTCATAGCCAA  150

seq1  GGAGATTCTCGCTACAGAACGAACCTATCTGAAGGATTTAGAAGTTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTCTCGCTACAGAACGAACCTATCTGAAGGATTTAGAAGTTATCA  200

seq1  CTGTGGTATGAAACCTTAGTCCTGATCTCTTTGATTTTTCTTCTATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTATGAAACCTTAGTCCTGATCTCTTTGATTTTTCTTCTATGTTT  250

seq1  TAGATATAAACACAGATATTCCATCGTGAGAAATATGTTGATAGACTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAAACACAGATATTCCATCGTGAGAAATATGTTGATAGACTTGG  300

seq1  GAGCTACATGTGGAAATTCTGTTGAATATGTTTGCCTTACAGCATGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACATGTGGAAATTCTGTTGAATATGTTTGCCTTACAGCATGATGT  350

seq1  CTAATCATGTCAGAATGCTCATGTCTTGCCAGGCAGTGGTGGTGAATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCATGTCAGAATGCTCATGTCTTGCCAGGCAGTGGTGGTGAATACC  400

seq1  TTTAATCCCAGCAGTCAGAAGGCAGAAGCACAAAGATCACTGAGTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCAGTCAGAAGGCAGAAGCACAAAGATCACTGAGTTCAAA  450

seq1  GCCAGCCTGGTCTACAGAGAAAGTTCCAGGACAGCCAGGGCAATACAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACAGAGAAAGTTCCAGGACAGCCAGGGCAATACAGAG  500

seq1  AATCCCTGCCTTAAACAAACAAACAAAAAGAATGCTAATGTCTTTTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGCCTTAAACAAACAAACAAAAAGAATGCTAATGTCTTTTCATG  550

seq1  AAGCTACAAAGCTTAGAATATATCTACCTGAAAGCTTTGATCTAGGATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACAAAGCTTAGAATATATCTACCTGAAAGCTTTGATCTAGGATTG  600

seq1  CTTTGTTTAAATTTCACAATTATACAGTCCACAAAGAGGATATGTGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTAAATTTCACAATTATACAGTCCACAAAGAGGATATGTGGAAT  650

seq1  GTGGATTTTTTGTTTATTTTTTGTTTTTGAGAC  683
      |||||||||||||||||||||||||||||||||
seq2  GTGGATTTTTTGTTTATTTTTTGTTTTTGAGAC  683