BAC Information

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BAC

Clone NameB6Ng01-088E19
Chromosome1 (Build37)
Map Location 32,095,808 - 32,096,900
singlet/doubletsinglet
Overlap genenone
Upstream gene4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
Downstream geneLOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088E19.bB6Ng01-088E19.g
ACCDH901192DH901193
length1,2501,075
definitionDH901192|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E19, 5' end.DH901193|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagttttatgtttgttgccaaattctttacaaaatgaagtaaaa
tttttgctagaataggatagcgtgttatctgtcttaataagtttgggcaa
tcccatgtcattaaaggcttgtaggcagtgatcaattacatttttggagg
cttctccagtatgcagagaagcaaaaagaaatcctgaacaagtgtcaata
caaacatgtatatattttaactttccaaattctgcataatgagttacatc
catttgccaaatatgattaggcataaaacctcgtggattaactcctaaat
gtggcactggagataatgtaatttatttaggacattgttttacaatcatt
cttgcctactccttagtgatcttatgtcggagccttaaggtatggctaga
gagatgaaatttttcatgatcacgtttggccaaagcaacgggatctgaaa
ttaaggcttctcctattagagctctgttgatgcaatcattgccttcagct
aaaggtccaggaagaccagaatgagatcttatgtggccaatatagaatgg
gtattttggggcaagaatgatgttttgtaattgtgaaaacagggatcctg
ctggcgtattaaagttaaacataccacaggtctccaataagggtaccgat
tgtgcaacatataaactatcagtaaaaatattaaaagcctcatccacaga
ctgaaagacattcagtactgctgttaattctgctaattgagctgagaggc
caggagtctttatcattacctgtttattatttataggaaatccagctcgc
cctttagaggagccatcagtaaacaccagaacagcattgtgtaagggttg
taaagaggtcatattaggaaatatcacctcatgtacattcaaaattttat
caacctatcttgagggtagtggctgtctatagtttgtaaaccctatttga
gcaagcaaccaatactgtgctgtttcacccagtgtcttgacccatagctg
acgataatatatggctctttgccaaaatagttagtgctgcttcttcagat
aatatctgagctactgcttcataaatgcagatttatgtttaggagaaatt
cttgaatgtataccattagagagacttttgctataaccattcctgttagc
catgaatcgtaaaataacaggacgttacgcaaatatctattagtgacagt
gctctcatagcctttctgacctattgtaaggcagaaatctcttctgaggg

gaattcatttgtgaatctaccctgctgtgtctcagagttcactgtttact
tgaagttatttatctccttggactgggaaaaatttttccatgcctttcca
gaaaataccccagagccttgggagaaatgtgtaattcaagtggaattgtg
ctataatggacaccaacactcttcttcaacaatacagcctaacaaataaa
gtttctatgtcagcaatggtgtgattggcctctctgttgatcagtgaggc
cccattcagtgctacttttagtacccttttaccctgcagaatgtgacagt
aaaacttcttgctcaagttaccatgtacttgagtcatagaacatagagac
caatatttcatcctctatgattgctgagatttttttttttttatgaagaa
caacatggggaggaaagagtttattcagcttacacttctacattgctcgt
catcaaaggaattcaggacaggaacccaaacatggcaggaaccatgaggc
aggaattgatacctcttaatactcatagcttgctcaccctgttttcttat
agaacccagagccaccaatcccagaaatagcaccacacacagtgggcatg
ccctctcccatagatcactaattaagaaaatgctctacaggctcacatac
aacttgatctttggaggggttttcttaactgaggttcttccatctcagat
gacttatcttgtgtcaagttggcaaaaactgtccaaaatagatactttct
tcccccttagctagaaaattttcattatttctccactacattctgtgctg
gtctctctgccttaagatacacatgatattgatattcataaatgctcatt
ttatgtatgtttatataaaaggacatggagtttcttcagtgtcttttcta
taattataaaataattgtattccctttaaattattccataaattcaaaat
agttttcatctaaacacacaaaaatataaatttggcactgaaattacatt
acaaattaataacaaaatgatacttgaactgctaaaaaataagaccacat
cgacaaaggcctgaaatattaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_32095808_32096900
seq2: B6Ng01-088E19.g_67_1141 (reverse)

seq1  TTTTTAAATGTATTTCAGGCTCTTTGATCTGATGTGGTTCTAATTTTCTT  50
      |||||||   |||||||||| ||||| || ||||||| ||| ||||| ||
seq2  TTTTTAA---TATTTCAGGC-CTTTG-TC-GATGTGG-TCTTATTTT-TT  42

seq1  AGCAGTTCAAGTGATCATTTTTGTATATTAATTTGTAATGTAAATTTCAG  100
      |||||||||||| |||| |||||| |||||||||||||||| ||||||||
seq2  AGCAGTTCAAGT-ATCA-TTTTGT-TATTAATTTGTAATGT-AATTTCAG  88

seq1  TTGCCAAATTTTATATTTTTTGTGTGTTTAGATGAAAACTATTTTGAATT  150
       ||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  -TGCCAAA-TTTATA-TTTTTGTGTGTTTAGATGAAAACTATTTTGAATT  135

seq1  TATGGAATAATTTAAAGGGAATACAATTATTTTATAATTATAAGAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATGGAATAATTTAAAGGGAATACAATTATTTTATAATTAT-AGAAAAGA  184

seq1  CACCTGAAGAAACTCCATGTCCTTTTATATAAAACATACATAAAATGAGC  250
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CA-CTGAAGAAACTCCATGTCCTTTTATAT-AAACATACATAAAATGAGC  232

seq1  ATTTATGAATATCAATATCATGTGTATCTTAAGGCAGAGAGACCAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAATATCAATATCATGTGTATCTTAAGGCAGAGAGACCAGCACA  282

seq1  GAATGTAGTGGAGAAATAATGAAAATTTTCTAGCTAAGGGGGAAGAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGTGGAGAAATAATGAAAATTTTCTAGCTAAGGGGGAAGAAAGT  332

seq1  ATCTATTTTGGACAGTTTTTGCCAACTTGACACAAGATAAGTCATCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTGGACAGTTTTTGCCAACTTGACACAAGATAAGTCATCTGAG  382

seq1  ATGGAAGAACCTCAGTTAAGAAAACCCCTCCAAAGATCAAGTTGTATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAACCTCAGTTAAGAAAACCCCTCCAAAGATCAAGTTGTATGTG  432

seq1  AGCCTGTAGAGCATTTTCTTAATTAGTGATCTATGGGAGAGGGCATGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTAGAGCATTTTCTTAATTAGTGATCTATGGGAGAGGGCATGCCC  482

seq1  ACTGTGTGTGGTGCTATTTCTGGGATTGGTGGCTCTGGGTTCTATAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGTGGTGCTATTTCTGGGATTGGTGGCTCTGGGTTCTATAAGAA  532

seq1  AACAGGGTGAGCAAGCTATGAGTATTAAGAGGTATCAATTCCTGCCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTGAGCAAGCTATGAGTATTAAGAGGTATCAATTCCTGCCTCAT  582

seq1  GGTTCCTGCCATGTTTGGGTTCCTGTCCTGAATTCCTTTGATGACGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGCCATGTTTGGGTTCCTGTCCTGAATTCCTTTGATGACGAGCA  632

seq1  ATGTAGAAGTGTAAGCTGAATAAACTCTTTCCTCCCCATGTTGTTCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAGTGTAAGCTGAATAAACTCTTTCCTCCCCATGTTGTTCTTCA  682

seq1  TAAAAAAAAAAAAATCTCAGCAATCATAGAGGATGAAATATTGGTCTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAATCTCAGCAATCATAGAGGATGAAATATTGGTCTCTA  732

seq1  TGTTCTATGACTCAAGTACATGGTAACTTGAGCAAGAAGTTTTACTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTATGACTCAAGTACATGGTAACTTGAGCAAGAAGTTTTACTGTCA  782

seq1  CATTCTGCAGGGTAAAAGGGTACTAAAAGTAGCACTGAATGGGGCCTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCAGGGTAAAAGGGTACTAAAAGTAGCACTGAATGGGGCCTCAC  832

seq1  TGATCAACAGAGAGGCCAATCACACCATTGCTGACATAGAAACTTTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAACAGAGAGGCCAATCACACCATTGCTGACATAGAAACTTTATTT  882

seq1  GTTAGGCTGTATTGTTGAAGAAGAGTGTTGGTGTCCATTATAGCACAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCTGTATTGTTGAAGAAGAGTGTTGGTGTCCATTATAGCACAATT  932

seq1  CCACTTGAATTACACATTTCTCCCAAGGCTCTGGGGTATTTTCTGGAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGAATTACACATTTCTCCCAAGGCTCTGGGGTATTTTCTGGAAAG  982

seq1  GCATGGAAAAATTTTTCCCAGTCCAAGGAGATAAATAACTTCAAGTAAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAAAAATTTTTCCCAGTCCAAGGAGATAAATAACTTCAAGTAAAC  1032

seq1  AGTGAACTCTGAGACACAGCAGGGTAGATTCACAAATGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTCTGAGACACAGCAGGGTAGATTCACAAATGAATTC  1075