BAC Information

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BAC

Clone NameB6Ng01-088E24
Chromosome1 (Build37)
Map Location 140,941,516 - 141,066,932
singlet/doubletdoublet
Overlap geneDennd1b
Upstream genePtprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623
Downstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088E24.bB6Ng01-088E24.g
ACCDH901202DH901203
length2801,045
definitionDH901202|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E24, 5' end.DH901203|Mus musculus domesticus DNA, BAC clone: B6Ng01-088E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,941,516 - 140,941,793)(141,065,884 - 141,066,932)
sequence
gaattcttccagagtctgtagaaatgtttagcagtgttgatggtaacaag
ctttaaagacgcagaaactttattagtgtcacttaagcttagcacatagg
gcatactatactaaaatattatatataatttataagccaatttaaataat
aaaagaatttagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtatgtgtctaagagctctttctagcagaaagttccttctgtatgtcca
ggtagttctgctatctctagcatctaccta
gaattccacatgcctccggagaagccaagaggcaagcaactgacccacta
ctggtacctaagtttggtttccacttctgctttcttctgaaatgtttaaa
tcttgttggaagtcacatgacatgtgacacaatgacactacttcttggag
aagtccgacatcctttgaaggcttcgtgtcctctttgccagccttctccc
agggaacaaaagtcgactggcggctcccggggccgggcaccgacagatcc
tctgactgaagtggagcctgacctggtgtttgcttcacttctgctcttcc
tctctctgtttgggaagcttcaggagcagcaggctgggaacgcagtcctg
aagtcggagctggctttcccaccacagtagggccacttacgctgtcagca
cagaggggcttctccctgctctcctctttcaggataaacagagactctgt
cagcccaccagaggaaacgcgtttccttggggatggagggagttgcctgc
catggagggcgctgtcgtcctgcccgagattccactctccctggtctcca
gaagcacacagcagggccaggttattctcactgggagcgttggacttgtt
ctgggaagggaattacaacttcagaatacttacaataaaatggcagtgat
tctttagtggtgtctgctttgcaagcaaggtcaccatgcttcagcagggg
cctgagccccaccccaggggtaggggagcactgactgaatcctgacagtt
cctgcctgccccatgaagaggaatgatgggtgtcgggtggggactccaca
aactctggtttcaatgtgtttagattgtcacctgtcacagtcaaatccac
atagaacgtcctgttctccagtcagaatggggtcccactgcacataaagg
tttattttgaagcactttagttcatttaaaactgttcactttttcaacag
aaaatagaaaaaatatttttagacatattattacagtgttttttttaagc
tcagagttttttataaaaataggaatgtttcaaaataaatgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_140941516_140941793
seq2: B6Ng01-088E24.b_44_323

seq1  GAATTCTTCCAGAGTCTGTAGAAATGTTTAGCAGTGTTGATGGTAACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAGAGTCTGTAGAAATGTTTAGCAGTGTTGATGGTAACAAG  50

seq1  CTTTAAAGACGCAGAAACTTTATTAGTGTCACTTAAGCTTAGCACATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGACGCAGAAACTTTATTAGTGTCACTTAAGCTTAGCACATAGG  100

seq1  GCATACTATACTAAAATATTATATATAATTTATAAGCCAATTTAAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTATACTAAAATATTATATATAATTTATAAGCCAATTTAAATAAT  150

seq1  AAAAGAATTTAGTT--TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  198
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  AAAAGAATTTAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  200

seq1  TGTATGTGTCTAAGAGCTCTTTCTAGCAGAAAGTTCCTTCTGTAGGTCCA  248
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTATGTGTCTAAGAGCTCTTTCTAGCAGAAAGTTCCTTCTGTATGTCCA  250

seq1  GGTAGTTCTGCTATCCCTAGCATCTACCTA  278
      ||||||||||||||| ||||||||||||||
seq2  GGTAGTTCTGCTATCTCTAGCATCTACCTA  280

seq1: chr1_141065884_141066932
seq2: B6Ng01-088E24.g_70_1114 (reverse)

seq1  AAAACATTTTTATGTGAAACATTCCTATTTTTATAAAAACTCCTGAGCTT  50
      ||||||||| | | |||||||||||||||||||||||||   ||||||||
seq2  AAAACATTTAT-TTTGAAACATTCCTATTTTTATAAAAAACTCTGAGCTT  49

seq1  TAAAAAAACACTGTAATTAATATGTCTTAAAAATATTTTTTCTATTTTCT  100
       ||||||||||||||| ||||||||| |||||||||||||||||||||| 
seq2  AAAAAAAACACTGTAA-TAATATGTC-TAAAAATATTTTTTCTATTTTC-  96

seq1  TGTTTGAAAAGTGAACAGTTTTAAATGAACTAAAGTGCTTCAAAATAAAC  150
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAAAAGTGAACAGTTTTAAATGAACTAAAGTGCTTCAAAATAAAC  146

seq1  CTTTATGTGCAGTGGGACCCCATTCTGACTGGAGAACAGGACGTTCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTGCAGTGGGACCCCATTCTGACTGGAGAACAGGACGTTCTATG  196

seq1  TGGATTTGACTGTGACAGGTGACAATCTAAACACATTGAAACCAGAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGACTGTGACAGGTGACAATCTAAACACATTGAAACCAGAGTTT  246

seq1  GTGGAGTCCCCACCCGACACCCATCATTCCTCTTCATGGGGCAGGCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTCCCCACCCGACACCCATCATTCCTCTTCATGGGGCAGGCAGGA  296

seq1  ACTGTCAGGATTCAGTCAGTGCTCCCCTACCCCTGGGGTGGGGCTCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGGATTCAGTCAGTGCTCCCCTACCCCTGGGGTGGGGCTCAGGC  346

seq1  CCCTGCTGAAGCATGGTGACCTTGCTTGCAAAGCAGACACCACTAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGAAGCATGGTGACCTTGCTTGCAAAGCAGACACCACTAAAGAA  396

seq1  TCACTGCCATTTTATTGTAAGTATTCTGAAGTTGTAATTCCCTTCCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCATTTTATTGTAAGTATTCTGAAGTTGTAATTCCCTTCCCAGA  446

seq1  ACAAGTCCAACGCTCCCAGTGAGAATAACCTGGCCCTGCTGTGTGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCCAACGCTCCCAGTGAGAATAACCTGGCCCTGCTGTGTGCTTCT  496

seq1  GGAGACCAGGGAGAGTGGAATCTCGGGCAGGACGACAGCGCCCTCCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCAGGGAGAGTGGAATCTCGGGCAGGACGACAGCGCCCTCCATGG  546

seq1  CAGGCAACTCCCTCCATCCCCAAGGAAACGCGTTTCCTCTGGTGGGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAACTCCCTCCATCCCCAAGGAAACGCGTTTCCTCTGGTGGGCTGA  596

seq1  CAGAGTCTCTGTTTATCCTGAAAGAGGAGAGCAGGGAGAAGCCCCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTCTGTTTATCCTGAAAGAGGAGAGCAGGGAGAAGCCCCTCTGT  646

seq1  GCTGACAGCGTAAGTGGCCCTACTGTGGTGGGAAAGCCAGCTCCGACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGCGTAAGTGGCCCTACTGTGGTGGGAAAGCCAGCTCCGACTTC  696

seq1  AGGACTGCGTTCCCAGCCTGCTGCTCCTGAAGCTTCCCAAACAGAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCGTTCCCAGCCTGCTGCTCCTGAAGCTTCCCAAACAGAGAGAG  746

seq1  GAAGAGCAGAAGTGAAGCAAACACCAGGTCAGGCTCCACTTCAGTCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGAAGTGAAGCAAACACCAGGTCAGGCTCCACTTCAGTCAGAG  796

seq1  GATCTGTCGGTGCCCGGCCCCGGGAGCCGCCAGTCGACTTTTGTTCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCGGTGCCCGGCCCCGGGAGCCGCCAGTCGACTTTTGTTCCCTG  846

seq1  GGAGAAGGCTGGCAAAGAGGACACGAAGCCTTCAAAGGATGTCGGACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGCTGGCAAAGAGGACACGAAGCCTTCAAAGGATGTCGGACTTC  896

seq1  TCCAAGAAGTAGTGTCATTGTGTCACATGTCATGTGACTTCCAACAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAGTAGTGTCATTGTGTCACATGTCATGTGACTTCCAACAAGAT  946

seq1  TTAAACATTTCAGAAGAAAGCAGAAGTGGAAACCAAACTTAGGTACCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTTCAGAAGAAAGCAGAAGTGGAAACCAAACTTAGGTACCAGT  996

seq1  AGTGGGTCAGTTGCTTGCCTCTTGGCTTCTCCGGAGGCATGTGGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTCAGTTGCTTGCCTCTTGGCTTCTCCGGAGGCATGTGGAATTC  1045